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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0455100.1 1 Osa01LNG0455100 9369681-9369885 intergenetic lncRNA (lincRNA) 205 25.36585 1
Osa01LNT0013500.1 1 Osa01LNG0013500 9394143-9396602 long non-coding(lnc) isoforms of known genes 621 51.36876 3
Osa01LNT0013600.1 1 Osa01LNG0013600 9626942-9630147 long non-coding(lnc) isoforms of known genes 970 54.02062 4
Osa01LNT0013700.1 1 Osa01LNG0013700 9644124-9651434 long non-coding(lnc) isoforms of known genes 3218 48.66377 10
Osa01LNT0013700.2 1 Osa01LNG0013700 9644124-9651434 long non-coding(lnc) isoforms of known genes 3307 48.32174 10
Osa01LNT0013800.1 1 Osa01LNG0013800 9670733-9675842 long non-coding(lnc) isoforms of known genes 1494 50.0 11
Osa01LNT0014000.1 1 Osa01LNG0014000 9793959-9800301 long non-coding(lnc) isoforms of known genes 1672 41.14833 11
Osa01LNT0013900.1 1 Osa01LNG0013900 9810245-9810675 intergenetic lncRNA (lincRNA) 431 67.98144 1
Osa01LNT0014100.1 1 Osa01LNG0014100 9889550-9894305 long non-coding(lnc) isoforms of known genes 1609 45.867 17
Osa10LNT0058700.1 10 Osa10LNG0058700 100437-103373 long non-coding(lnc) isoforms of known genes 1897 49.13021 8
Osa10LNT0059300.1 10 Osa10LNG0059300 1007665-1012906 long non-coding(lnc) isoforms of known genes 3265 45.39051 11
Osa10LNT0059100.1 10 Osa10LNG0059100 1016395-1017222 intergenetic lncRNA (lincRNA) 711 38.81857 2
Osa10LNT0066100.1 10 Osa10LNG0066100 10165148-10167567 intergenetic lncRNA (lincRNA) 522 40.42146 2
Osa10LNT0066200.2 10 Osa10LNG0066200 10216071-10218310 long non-coding(lnc) isoforms of known genes 1113 47.5292 4
Osa10LNT0066200.1 10 Osa10LNG0066200 10216071-10218310 long non-coding(lnc) isoforms of known genes 1647 45.90164 3
Osa10LNT0066300.1 10 Osa10LNG0066300 10305149-10305579 intergenetic lncRNA (lincRNA) 431 35.96288 1
Osa10LNT0059200.1 10 Osa10LNG0059200 1031403-1037595 sense lncRNA 4117 46.00437 7
Osa10LNT0066400.1 10 Osa10LNG0066400 10411125-10418560 long non-coding(lnc) isoforms of known genes 2478 47.94189 12
Osa10LNT0572700.1 10 Osa10LNG0572700 10472230-10472474 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa10LNT0572800.1 10 Osa10LNG0572800 10472230-10472474 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa10LNT0573000.1 10 Osa10LNG0573000 10472541-10472855 intergenetic lncRNA (lincRNA) 315 26.66667 1
Osa10LNT0572900.1 10 Osa10LNG0572900 10472541-10472855 intergenetic lncRNA (lincRNA) 315 26.66667 1
Osa10LNT0569100.1 10 Osa10LNG0569100 1051727-1052001 intronic lncRNA 275 28.36364 1
Osa10LNT0569200.1 10 Osa10LNG0569200 1051727-1052001 intronic lncRNA 275 28.36364 1
Osa10LNT0066500.1 10 Osa10LNG0066500 10539940-10544799 long non-coding(lnc) isoforms of known genes 785 55.41401 4
Osa10LNT0573100.1 10 Osa10LNG0573100 10740248-10740501 intergenetic lncRNA (lincRNA) 254 49.2126 1
Osa10LNT0066600.1 10 Osa10LNG0066600 10766629-10775843 sense lncRNA 1394 44.69154 2
Osa10LNT0067600.1 10 Osa10LNG0067600 10813962-10814319 intergenetic lncRNA (lincRNA) 358 33.51955 1
Osa10LNT0059400.2 10 Osa10LNG0059400 1085238-1089511 long non-coding(lnc) isoforms of known genes 2683 48.56504 7
Osa10LNT0059400.1 10 Osa10LNG0059400 1085238-1089511 long non-coding(lnc) isoforms of known genes 2361 49.72469 7
Osa10LNT0067700.1 10 Osa10LNG0067700 10853678-10854203 intergenetic lncRNA (lincRNA) 526 35.55133 1
Osa10LNT0067800.3 10 Osa10LNG0067800 10898391-10899862 intergenetic lncRNA (lincRNA) 1465 55.22184 1
Osa10LNT0067800.2 10 Osa10LNG0067800 10898391-10899862 intergenetic lncRNA (lincRNA) 1462 55.19836 1
Osa10LNT0067800.1 10 Osa10LNG0067800 10898391-10899862 intergenetic lncRNA (lincRNA) 1472 55.09511 1
Osa10LNT0066700.1 10 Osa10LNG0066700 10917415-10918294 intergenetic lncRNA (lincRNA) 880 28.06818 1
Osa10LNT0066800.1 10 Osa10LNG0066800 10928348-10931710 long non-coding(lnc) isoforms of known genes 1972 45.28398 5
Osa10LNT0059600.1 10 Osa10LNG0059600 1092855-1096873 long non-coding(lnc) isoforms of known genes 1511 52.74653 4
Osa10LNT0066900.3 10 Osa10LNG0066900 11035676-11040596 long non-coding(lnc) isoforms of known genes 3024 39.48413 4
Osa10LNT0066900.2 10 Osa10LNG0066900 11035676-11040596 long non-coding(lnc) isoforms of known genes 2000 43.45 6
Osa10LNT0066900.1 10 Osa10LNG0066900 11035676-11040596 long non-coding(lnc) isoforms of known genes 2952 40.2439 5
Osa10LNT0573200.1 10 Osa10LNG0573200 11082843-11083114 intergenetic lncRNA (lincRNA) 272 27.94118 1
Osa10LNT0573300.1 10 Osa10LNG0573300 11082844-11083114 intergenetic lncRNA (lincRNA) 271 28.04428 1
Osa10LNT0573500.1 10 Osa10LNG0573500 11083181-11083426 intergenetic lncRNA (lincRNA) 246 24.39024 1
Osa10LNT0573400.1 10 Osa10LNG0573400 11083181-11083426 intergenetic lncRNA (lincRNA) 246 24.39024 1
Osa10LNT0059500.1 10 Osa10LNG0059500 1118262-1118843 intergenetic lncRNA (lincRNA) 582 56.70103 1
Osa10LNT0067000.1 10 Osa10LNG0067000 11191930-11204088 long non-coding(lnc) isoforms of known genes 5176 44.70634 14
Osa10LNT0067100.1 10 Osa10LNG0067100 11305125-11317869 long non-coding(lnc) isoforms of known genes 6354 42.4457 11
Osa10LNT0059700.1 10 Osa10LNG0059700 1139929-1141429 long non-coding(lnc) isoforms of known genes 1392 51.07759 2
Osa10LNT0067200.1 10 Osa10LNG0067200 11572476-11576077 sense lncRNA 2407 47.69423 3
Osa10LNT0067200.2 10 Osa10LNG0067200 11572476-11576077 sense lncRNA 2322 48.32041 4