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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0252300.2 4 Osa04LNG0252300 8277248-8285271 long non-coding(lnc) isoforms of known genes 1861 46.74906 8
Osa04LNT0252300.1 4 Osa04LNG0252300 8277248-8285271 long non-coding(lnc) isoforms of known genes 3796 47.18124 7
Osa04LNT0252400.1 4 Osa04LNG0252400 8307367-8314102 long non-coding(lnc) isoforms of known genes 2017 47.0005 7
Osa04LNT0252500.1 4 Osa04LNG0252500 8322670-8327520 intergenetic lncRNA (lincRNA) 747 56.89424 3
Osa04LNT0246000.1 4 Osa04LNG0246000 835516-837306 long non-coding(lnc) isoforms of known genes 539 57.88497 2
Osa04LNT0252600.1 4 Osa04LNG0252600 8588685-8594100 long non-coding(lnc) isoforms of known genes 2145 49.09091 15
Osa04LNT0483100.1 4 Osa04LNG0483100 863327-863601 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0483200.1 4 Osa04LNG0483200 863327-863601 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0252700.1 4 Osa04LNG0252700 8764579-8767163 long non-coding(lnc) isoforms of known genes 2270 41.32159 2
Osa04LNT0486900.1 4 Osa04LNG0486900 9115456-9115981 intergenetic lncRNA (lincRNA) 526 35.36122 1
Osa04LNT0252800.1 4 Osa04LNG0252800 9262698-9265370 long non-coding(lnc) isoforms of known genes 2218 46.25789 4
Osa04LNT0252900.1 4 Osa04LNG0252900 9368053-9369130 long non-coding(lnc) isoforms of known genes 957 52.87356 2
Osa04LNT0253000.1 4 Osa04LNG0253000 9376536-9388852 sense lncRNA 3517 43.87262 15
Osa04LNT0246200.1 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 538 53.90335 2
Osa04LNT0246200.2 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 595 53.44538 3
Osa04LNT0246200.3 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 1435 49.33798 3
Osa04LNT0253100.1 4 Osa04LNG0253100 9676364-9678593 sense lncRNA 776 60.69588 2
Osa04LNT0253200.1 4 Osa04LNG0253200 9687994-9689204 sense lncRNA 656 46.18902 3
Osa04LNT0253700.2 4 Osa04LNG0253700 9888904-9916256 long non-coding(lnc) isoforms of known genes 5341 44.35499 26
Osa04LNT0253700.1 4 Osa04LNG0253700 9888904-9916256 long non-coding(lnc) isoforms of known genes 5167 44.39714 26
Osa04LNT0253300.1 4 Osa04LNG0253300 9919847-9926446 intergenetic lncRNA (lincRNA) 513 50.87719 3
Osa04LNT0253600.1 4 Osa04LNG0253600 9939337-9956348 long non-coding(lnc) isoforms of known genes 2929 45.51041 21
Osa05LNT0291500.1 5 Osa05LNG0291500 1007909-1008429 intronic lncRNA 521 33.20537 1
Osa05LNT0291600.1 5 Osa05LNG0291600 1026087-1026890 intergenetic lncRNA (lincRNA) 499 55.11022 2
Osa05LNT0300300.1 5 Osa05LNG0300300 10266403-10269380 intergenetic lncRNA (lincRNA) 1230 52.84553 4