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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0124300.1 12 Osa12LNG0124300 10756704-10762955 long non-coding(lnc) isoforms of known genes 1736 49.02074 8
Osa12LNT0124400.1 12 Osa12LNG0124400 10807115-10810200 long non-coding(lnc) isoforms of known genes 1466 47.27149 7
Osa12LNT0113400.1 12 Osa12LNG0113400 1093760-1096549 long non-coding(lnc) isoforms of known genes 1516 42.08443 6
Osa12LNT0124500.2 12 Osa12LNG0124500 10963391-10971767 long non-coding(lnc) isoforms of known genes 1639 43.56315 10
Osa12LNT0124500.1 12 Osa12LNG0124500 10963391-10971767 long non-coding(lnc) isoforms of known genes 1095 41.18721 7
Osa12LNT0124600.2 12 Osa12LNG0124600 10999138-11004246 long non-coding(lnc) isoforms of known genes 1873 49.22584 7
Osa12LNT0124600.1 12 Osa12LNG0124600 10999138-11004246 long non-coding(lnc) isoforms of known genes 2122 46.93685 7
Osa12LNT0124600.3 12 Osa12LNG0124600 10999138-11004246 long non-coding(lnc) isoforms of known genes 1756 49.94305 8
Osa12LNT0561500.1 12 Osa12LNG0561500 11044035-11044309 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0124700.1 12 Osa12LNG0124700 11045896-11057103 long non-coding(lnc) isoforms of known genes 2055 52.79805 13
Osa12LNT0124900.1 12 Osa12LNG0124900 11081126-11084303 long non-coding(lnc) isoforms of known genes 1185 47.25738 6
Osa12LNT0124800.1 12 Osa12LNG0124800 11087211-11087841 intergenetic lncRNA (lincRNA) 631 30.90333 1
Osa12LNT0125000.1 12 Osa12LNG0125000 11165595-11166831 intergenetic lncRNA (lincRNA) 714 37.39496 3
Osa12LNT0561600.1 12 Osa12LNG0561600 11283721-11284245 intergenetic lncRNA (lincRNA) 525 34.85714 1
Osa12LNT0125100.1 12 Osa12LNG0125100 11284647-11287386 intergenetic lncRNA (lincRNA) 2740 36.45985 1
Osa12LNT0111800.1 12 Osa12LNG0111800 112857-120226 long non-coding(lnc) isoforms of known genes 3355 46.1699 15
Osa12LNT0125200.1 12 Osa12LNG0125200 11362521-11378831 long non-coding(lnc) isoforms of known genes 4802 43.6693 13
Osa12LNT0113500.1 12 Osa12LNG0113500 1151632-1155729 long non-coding(lnc) isoforms of known genes 1298 44.9923 10
Osa12LNT0113600.1 12 Osa12LNG0113600 1158443-1165291 long non-coding(lnc) isoforms of known genes 5540 43.12274 6
Osa12LNT0125300.1 12 Osa12LNG0125300 11866876-11871615 long non-coding(lnc) isoforms of known genes 2147 49.46437 12
Osa12LNT0113700.2 12 Osa12LNG0113700 1220955-1224975 long non-coding(lnc) isoforms of known genes 2139 44.22627 6
Osa12LNT0113700.1 12 Osa12LNG0113700 1220955-1224975 long non-coding(lnc) isoforms of known genes 1939 44.6622 7
Osa12LNT0125400.1 12 Osa12LNG0125400 12264732-12268569 long non-coding(lnc) isoforms of known genes 2275 49.27473 3
Osa12LNT0125400.2 12 Osa12LNG0125400 12264732-12268569 long non-coding(lnc) isoforms of known genes 2188 48.766 4
Osa12LNT0561800.1 12 Osa12LNG0561800 12283749-12284022 intergenetic lncRNA (lincRNA) 274 29.19708 1
Osa12LNT0561700.1 12 Osa12LNG0561700 12283749-12284022 intergenetic lncRNA (lincRNA) 274 29.19708 1
Osa12LNT0125500.1 12 Osa12LNG0125500 12321682-12330180 long non-coding(lnc) isoforms of known genes 2935 45.07666 12
Osa12LNT0125700.1 12 Osa12LNG0125700 12379507-12383273 long non-coding(lnc) isoforms of known genes 1125 54.66667 7
Osa12LNT0125600.1 12 Osa12LNG0125600 12400174-12403094 intergenetic lncRNA (lincRNA) 2831 36.24161 2
Osa12LNT0562000.1 12 Osa12LNG0562000 12403373-12403629 intergenetic lncRNA (lincRNA) 257 28.01556 1
Osa12LNT0561900.1 12 Osa12LNG0561900 12403373-12403629 intergenetic lncRNA (lincRNA) 257 28.01556 1
Osa12LNT0126000.1 12 Osa12LNG0126000 12569161-12586991 long non-coding(lnc) isoforms of known genes 2826 50.63694 7
Osa12LNT0125900.1 12 Osa12LNG0125900 12691335-12694765 intergenetic lncRNA (lincRNA) 252 49.60317 3
Osa12LNT0125800.1 12 Osa12LNG0125800 12740472-12740697 intergenetic lncRNA (lincRNA) 226 31.85841 1
Osa12LNT0126100.2 12 Osa12LNG0126100 12833846-12839245 long non-coding(lnc) isoforms of known genes 5330 42.38274 2
Osa12LNT0126100.1 12 Osa12LNG0126100 12833846-12839245 long non-coding(lnc) isoforms of known genes 3864 44.35818 6
Osa12LNT0126100.4 12 Osa12LNG0126100 12833846-12839245 long non-coding(lnc) isoforms of known genes 3703 44.93654 7
Osa12LNT0126100.3 12 Osa12LNG0126100 12833846-12839245 long non-coding(lnc) isoforms of known genes 4319 43.43598 4
Osa12LNT0562100.1 12 Osa12LNG0562100 12892405-12892627 intergenetic lncRNA (lincRNA) 223 34.08072 1
Osa12LNT0113800.1 12 Osa12LNG0113800 1292685-1298533 long non-coding(lnc) isoforms of known genes 4369 39.96338 4
Osa12LNT0562200.1 12 Osa12LNG0562200 12929493-12929701 intergenetic lncRNA (lincRNA) 209 46.88995 1
Osa12LNT0126200.1 12 Osa12LNG0126200 12938421-12940324 intergenetic lncRNA (lincRNA) 807 53.03594 4
Osa12LNT0126200.2 12 Osa12LNG0126200 12938421-12940324 intergenetic lncRNA (lincRNA) 831 52.58724 4
Osa12LNT0126300.1 12 Osa12LNG0126300 12940714-12942303 intergenetic lncRNA (lincRNA) 610 48.36066 2
Osa12LNT0126400.1 12 Osa12LNG0126400 13021779-13025297 long non-coding(lnc) isoforms of known genes 1114 52.51346 4
Osa12LNT0126500.2 12 Osa12LNG0126500 13094810-13096936 long non-coding(lnc) isoforms of known genes 1481 52.32951 7
Osa12LNT0126500.1 12 Osa12LNG0126500 13094810-13096936 long non-coding(lnc) isoforms of known genes 1540 51.42857 7
Osa12LNT0113900.1 12 Osa12LNG0113900 1323547-1328243 long non-coding(lnc) isoforms of known genes 3280 43.2622 6
Osa12LNT0126600.1 12 Osa12LNG0126600 13405690-13405959 intergenetic lncRNA (lincRNA) 270 52.96296 1
Osa12LNT0126700.1 12 Osa12LNG0126700 13454542-13454859 intergenetic lncRNA (lincRNA) 318 43.39623 1
Osa12LNT0126800.2 12 Osa12LNG0126800 13487313-13490733 long non-coding(lnc) isoforms of known genes 1965 45.34351 6
Osa12LNT0126800.1 12 Osa12LNG0126800 13487313-13490733 long non-coding(lnc) isoforms of known genes 2181 44.47501 4
Osa12LNT0126900.1 12 Osa12LNG0126900 13512138-13513425 long non-coding(lnc) isoforms of known genes 969 57.27554 2
Osa12LNT0562300.1 12 Osa12LNG0562300 13524164-13524378 intergenetic lncRNA (lincRNA) 215 44.18605 1
Osa12LNT0127100.1 12 Osa12LNG0127100 13816007-13829762 long non-coding(lnc) isoforms of known genes 3418 52.51609 24
Osa12LNT0127000.1 12 Osa12LNG0127000 13920844-13921354 intergenetic lncRNA (lincRNA) 511 60.66536 1
Osa12LNT0127200.2 12 Osa12LNG0127200 14013372-14020317 long non-coding(lnc) isoforms of known genes 1921 41.3847 7
Osa12LNT0127200.1 12 Osa12LNG0127200 14013372-14020317 long non-coding(lnc) isoforms of known genes 4151 43.09805 13
Osa12LNT0562400.1 12 Osa12LNG0562400 14702337-14702591 intergenetic lncRNA (lincRNA) 255 26.66667 1
Osa12LNT0127300.1 12 Osa12LNG0127300 14746988-14747475 intergenetic lncRNA (lincRNA) 488 56.55738 1
Osa12LNT0127400.1 12 Osa12LNG0127400 14754353-14757981 sense lncRNA 652 51.38037 2
Osa12LNT0562600.1 12 Osa12LNG0562600 14784450-14784723 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa12LNT0562500.1 12 Osa12LNG0562500 14784450-14784723 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa12LNT0127500.1 12 Osa12LNG0127500 14907829-14916631 long non-coding(lnc) isoforms of known genes 2398 42.78565 15
Osa12LNT0114000.1 12 Osa12LNG0114000 1500415-1505644 long non-coding(lnc) isoforms of known genes 2458 47.35557 11
Osa12LNT0127600.1 12 Osa12LNG0127600 15133090-15133604 intronic lncRNA 515 53.78641 1
Osa12LNT0127700.1 12 Osa12LNG0127700 15139495-15139699 intronic lncRNA 205 22.92683 1
Osa12LNT0127800.1 12 Osa12LNG0127800 15469889-15470243 intergenetic lncRNA (lincRNA) 355 75.49296 1
Osa12LNT0128000.1 12 Osa12LNG0128000 15472945-15475350 long non-coding(lnc) isoforms of known genes 1140 49.5614 7
Osa12LNT0127900.1 12 Osa12LNG0127900 15507113-15508046 intergenetic lncRNA (lincRNA) 934 52.99786 1
Osa12LNT0114100.1 12 Osa12LNG0114100 1562209-1566509 long non-coding(lnc) isoforms of known genes 1789 44.15875 12
Osa12LNT0128100.1 12 Osa12LNG0128100 15728663-15754789 intergenetic lncRNA (lincRNA) 2838 46.26498 15
Osa12LNT0562700.1 12 Osa12LNG0562700 15814884-15815156 intergenetic lncRNA (lincRNA) 273 29.67033 1
Osa12LNT0562800.1 12 Osa12LNG0562800 15814884-15815156 intergenetic lncRNA (lincRNA) 273 29.67033 1
Osa12LNT0562900.1 12 Osa12LNG0562900 15878792-15879005 intergenetic lncRNA (lincRNA) 214 39.25234 1
Osa12LNT0128300.2 12 Osa12LNG0128300 15894622-15899503 long non-coding(lnc) isoforms of known genes 2716 43.7408 9
Osa12LNT0128300.1 12 Osa12LNG0128300 15894622-15899503 long non-coding(lnc) isoforms of known genes 2504 44.00958 9
Osa12LNT0114200.1 12 Osa12LNG0114200 1594471-1599099 long non-coding(lnc) isoforms of known genes 1112 49.19065 4
Osa12LNT0563000.1 12 Osa12LNG0563000 15953846-15954120 intergenetic lncRNA (lincRNA) 275 28.36364 1
Osa12LNT0563100.1 12 Osa12LNG0563100 15953846-15954120 intergenetic lncRNA (lincRNA) 275 28.36364 1
Osa12LNT0128200.1 12 Osa12LNG0128200 15989561-15990673 intergenetic lncRNA (lincRNA) 1113 52.65049 1
Osa12LNT0114300.1 12 Osa12LNG0114300 1606119-1613167 long non-coding(lnc) isoforms of known genes 1823 43.06089 17
Osa12LNT0128600.2 12 Osa12LNG0128600 16196141-16199451 long non-coding(lnc) isoforms of known genes 880 44.20455 3
Osa12LNT0128600.3 12 Osa12LNG0128600 16196141-16199451 long non-coding(lnc) isoforms of known genes 1626 46.61747 5
Osa12LNT0128600.1 12 Osa12LNG0128600 16196141-16199451 long non-coding(lnc) isoforms of known genes 1562 46.41485 12
Osa12LNT0563200.1 12 Osa12LNG0563200 16253173-16253373 intergenetic lncRNA (lincRNA) 201 49.25373 1
Osa12LNT0114400.2 12 Osa12LNG0114400 1634750-1645907 long non-coding(lnc) isoforms of known genes 1680 39.04762 10
Osa12LNT0114400.1 12 Osa12LNG0114400 1634750-1645907 long non-coding(lnc) isoforms of known genes 1756 38.95216 11
Osa12LNT0128400.1 12 Osa12LNG0128400 16404344-16406639 long non-coding(lnc) isoforms of known genes 1686 49.82206 3
Osa12LNT0128500.1 12 Osa12LNG0128500 16500219-16507887 long non-coding(lnc) isoforms of known genes 1489 55.87643 2
Osa12LNT0114500.1 12 Osa12LNG0114500 1650866-1652223 long non-coding(lnc) isoforms of known genes 931 45.43502 2
Osa12LNT0128700.3 12 Osa12LNG0128700 16589263-16595990 long non-coding(lnc) isoforms of known genes 4222 46.58929 4
Osa12LNT0128700.2 12 Osa12LNG0128700 16589263-16595990 long non-coding(lnc) isoforms of known genes 4063 46.83731 4
Osa12LNT0128700.1 12 Osa12LNG0128700 16589263-16595990 long non-coding(lnc) isoforms of known genes 4428 46.16079 3
Osa12LNT0128800.1 12 Osa12LNG0128800 16685499-16692195 sense lncRNA 3447 46.79431 4
Osa12LNT0114600.1 12 Osa12LNG0114600 1675882-1689767 long non-coding(lnc) isoforms of known genes 4953 41.57077 30
Osa12LNT0114600.2 12 Osa12LNG0114600 1675882-1689767 long non-coding(lnc) isoforms of known genes 4957 41.59774 30
Osa12LNT0114700.1 12 Osa12LNG0114700 1689907-1690684 intergenetic lncRNA (lincRNA) 320 42.1875 3
Osa12LNT0114800.1 12 Osa12LNG0114800 1690776-1691604 intergenetic lncRNA (lincRNA) 426 60.32864 2
Osa12LNT0563300.1 12 Osa12LNG0563300 17030726-17030951 intergenetic lncRNA (lincRNA) 226 49.55752 1