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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0563400.1 12 Osa12LNG0563400 17316975-17317190 intergenetic lncRNA (lincRNA) 216 49.53704 1
Osa12LNT0128900.1 12 Osa12LNG0128900 17354041-17358720 intergenetic lncRNA (lincRNA) 540 48.33333 2
Osa12LNT0558500.1 12 Osa12LNG0558500 1743705-1743949 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa12LNT0129000.1 12 Osa12LNG0129000 17565473-17566048 intergenetic lncRNA (lincRNA) 576 52.08333 1
Osa12LNT0129100.1 12 Osa12LNG0129100 17628056-17632409 long non-coding(lnc) isoforms of known genes 3067 47.89697 3
Osa12LNT0129200.1 12 Osa12LNG0129200 17660372-17661005 intergenetic lncRNA (lincRNA) 634 54.10095 1
Osa12LNT0114900.2 12 Osa12LNG0114900 1772567-1774576 intergenetic lncRNA (lincRNA) 1770 39.60452 3
Osa12LNT0114900.1 12 Osa12LNG0114900 1772567-1774576 intergenetic lncRNA (lincRNA) 1893 40.09509 2
Osa12LNT0115000.1 12 Osa12LNG0115000 1774957-1777703 sense lncRNA 938 52.77186 3
Osa12LNT0129400.1 12 Osa12LNG0129400 17924596-17931646 long non-coding(lnc) isoforms of known genes 2657 44.29808 12
Osa12LNT0129300.1 12 Osa12LNG0129300 17950479-17951211 intergenetic lncRNA (lincRNA) 733 46.38472 1
Osa12LNT0563600.1 12 Osa12LNG0563600 18025719-18025992 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa12LNT0563500.1 12 Osa12LNG0563500 18025719-18025992 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa12LNT0115100.1 12 Osa12LNG0115100 1807696-1811160 long non-coding(lnc) isoforms of known genes 1464 49.24863 11
Osa12LNT0129500.1 12 Osa12LNG0129500 18195132-18201528 long non-coding(lnc) isoforms of known genes 900 46.22222 6
Osa12LNT0129600.1 12 Osa12LNG0129600 18311011-18313079 long non-coding(lnc) isoforms of known genes 802 48.50374 4
Osa12LNT0129700.1 12 Osa12LNG0129700 18315197-18319042 long non-coding(lnc) isoforms of known genes 2655 44.93409 5
Osa12LNT0129800.1 12 Osa12LNG0129800 18367415-18368323 intergenetic lncRNA (lincRNA) 909 53.57536 1
Osa12LNT0563700.1 12 Osa12LNG0563700 18438880-18439079 intergenetic lncRNA (lincRNA) 200 47.5 1
Osa12LNT0115200.1 12 Osa12LNG0115200 1855805-1859461 sense lncRNA 1612 50.37221 2
Osa12LNT0563800.1 12 Osa12LNG0563800 18564624-18564896 intergenetic lncRNA (lincRNA) 273 29.30403 1
Osa12LNT0563900.1 12 Osa12LNG0563900 18564624-18564896 intergenetic lncRNA (lincRNA) 273 29.30403 1
Osa12LNT0129900.1 12 Osa12LNG0129900 18721650-18724616 long non-coding(lnc) isoforms of known genes 649 53.77504 3
Osa12LNT0130000.1 12 Osa12LNG0130000 18879433-18882393 long non-coding(lnc) isoforms of known genes 1792 48.4933 5
Osa12LNT0130100.1 12 Osa12LNG0130100 18893090-18896100 intergenetic lncRNA (lincRNA) 1450 45.03448 5
Osa12LNT0130100.2 12 Osa12LNG0130100 18893090-18896100 intergenetic lncRNA (lincRNA) 1754 43.6146 5
Osa12LNT0130200.1 12 Osa12LNG0130200 18913320-18915653 long non-coding(lnc) isoforms of known genes 969 47.88442 2
Osa12LNT0130300.1 12 Osa12LNG0130300 18918285-18920666 long non-coding(lnc) isoforms of known genes 1729 47.07924 4
Osa12LNT0130400.1 12 Osa12LNG0130400 18988892-18989469 intergenetic lncRNA (lincRNA) 578 52.42215 1
Osa12LNT0564000.1 12 Osa12LNG0564000 19042627-19042891 intergenetic lncRNA (lincRNA) 265 24.90566 1
Osa12LNT0130500.1 12 Osa12LNG0130500 19067896-19072449 long non-coding(lnc) isoforms of known genes 2682 44.22073 7
Osa12LNT0130500.2 12 Osa12LNG0130500 19067896-19072449 sense lncRNA 1367 45.6474 6
Osa12LNT0564100.1 12 Osa12LNG0564100 19100259-19100473 intergenetic lncRNA (lincRNA) 215 27.90698 1
Osa12LNT0130600.1 12 Osa12LNG0130600 19125764-19129673 long non-coding(lnc) isoforms of known genes 943 44.11453 4
Osa12LNT0130700.1 12 Osa12LNG0130700 19161855-19165274 long non-coding(lnc) isoforms of known genes 2160 46.2963 8
Osa12LNT0130700.2 12 Osa12LNG0130700 19161855-19165274 long non-coding(lnc) isoforms of known genes 1854 48.75944 8
Osa12LNT0130800.2 12 Osa12LNG0130800 19193342-19193913 intergenetic lncRNA (lincRNA) 511 50.48924 1
Osa12LNT0130800.1 12 Osa12LNG0130800 19193342-19193913 intergenetic lncRNA (lincRNA) 572 49.12587 1
Osa12LNT0130900.1 12 Osa12LNG0130900 19204226-19206426 long non-coding(lnc) isoforms of known genes 1342 55.58867 7
Osa12LNT0115300.1 12 Osa12LNG0115300 1942115-1947957 long non-coding(lnc) isoforms of known genes 1665 45.58559 10
Osa12LNT0131000.1 12 Osa12LNG0131000 19488023-19492760 sense lncRNA 732 56.69399 2
Osa12LNT0131100.1 12 Osa12LNG0131100 19493189-19494900 long non-coding(lnc) isoforms of known genes 503 48.90656 4
Osa12LNT0564200.1 12 Osa12LNG0564200 19604134-19604378 intergenetic lncRNA (lincRNA) 245 23.67347 1
Osa12LNT0131200.1 12 Osa12LNG0131200 19657007-19660520 long non-coding(lnc) isoforms of known genes 778 51.15681 4
Osa12LNT0131300.1 12 Osa12LNG0131300 19758072-19758295 intergenetic lncRNA (lincRNA) 224 27.23214 1
Osa12LNT0564300.1 12 Osa12LNG0564300 19805670-19805897 intergenetic lncRNA (lincRNA) 228 28.94737 1
Osa12LNT0131400.1 12 Osa12LNG0131400 19828424-19837063 long non-coding(lnc) isoforms of known genes 4193 42.33246 20
Osa12LNT0564400.1 12 Osa12LNG0564400 19845176-19845380 intergenetic lncRNA (lincRNA) 205 25.36585 1
Osa12LNT0564500.1 12 Osa12LNG0564500 19886398-19886614 intergenetic lncRNA (lincRNA) 217 20.73733 1
Osa12LNT0131500.1 12 Osa12LNG0131500 20028867-20032856 long non-coding(lnc) isoforms of known genes 1997 44.31647 9
Osa12LNT0558600.1 12 Osa12LNG0558600 2004867-2005140 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa12LNT0558700.1 12 Osa12LNG0558700 2004867-2005140 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa12LNT0131600.1 12 Osa12LNG0131600 20061914-20066919 long non-coding(lnc) isoforms of known genes 3051 44.34612 5
Osa12LNT0115400.1 12 Osa12LNG0115400 2017496-2022875 long non-coding(lnc) isoforms of known genes 2392 45.69398 14
Osa12LNT0131700.1 12 Osa12LNG0131700 20190726-20191298 intergenetic lncRNA (lincRNA) 573 50.95986 1
Osa12LNT0131800.1 12 Osa12LNG0131800 20193139-20194743 intergenetic lncRNA (lincRNA) 1326 44.94721 3
Osa12LNT0131800.3 12 Osa12LNG0131800 20193139-20194743 intergenetic lncRNA (lincRNA) 902 47.45011 4
Osa12LNT0131800.2 12 Osa12LNG0131800 20193139-20194743 intergenetic lncRNA (lincRNA) 987 47.61905 4
Osa12LNT0131900.1 12 Osa12LNG0131900 20197288-20199444 intergenetic lncRNA (lincRNA) 761 61.49803 2
Osa12LNT0115500.2 12 Osa12LNG0115500 2031777-2040591 long non-coding(lnc) isoforms of known genes 3843 40.90554 10
Osa12LNT0115500.1 12 Osa12LNG0115500 2031777-2040591 long non-coding(lnc) isoforms of known genes 3777 40.82605 10
Osa12LNT0132100.1 12 Osa12LNG0132100 20638811-20640500 intergenetic lncRNA (lincRNA) 1690 53.72781 1
Osa12LNT0132100.2 12 Osa12LNG0132100 20638811-20640500 intergenetic lncRNA (lincRNA) 1680 53.80952 1
Osa12LNT0132000.1 12 Osa12LNG0132000 20660199-20660921 intergenetic lncRNA (lincRNA) 723 47.44122 1
Osa12LNT0132200.1 12 Osa12LNG0132200 20749145-20752135 long non-coding(lnc) isoforms of known genes 1922 46.56608 2
Osa12LNT0132300.1 12 Osa12LNG0132300 20813626-20813988 intergenetic lncRNA (lincRNA) 280 56.78571 2
Osa12LNT0132400.2 12 Osa12LNG0132400 20816365-20820738 long non-coding(lnc) isoforms of known genes 1962 48.16514 4
Osa12LNT0132400.1 12 Osa12LNG0132400 20816365-20820738 long non-coding(lnc) isoforms of known genes 1877 48.5349 4
Osa12LNT0132500.1 12 Osa12LNG0132500 20844119-20846021 long non-coding(lnc) isoforms of known genes 526 53.42205 2
Osa12LNT0132600.1 12 Osa12LNG0132600 21023346-21024311 intergenetic lncRNA (lincRNA) 966 30.0207 1
Osa12LNT0564600.1 12 Osa12LNG0564600 21155099-21155341 intergenetic lncRNA (lincRNA) 243 25.5144 1
Osa12LNT0564700.1 12 Osa12LNG0564700 21155099-21155341 intergenetic lncRNA (lincRNA) 243 25.5144 1
Osa12LNT0564800.1 12 Osa12LNG0564800 21155408-21155678 intergenetic lncRNA (lincRNA) 271 25.46125 1
Osa12LNT0564900.1 12 Osa12LNG0564900 21155408-21155678 intergenetic lncRNA (lincRNA) 271 25.46125 1
Osa12LNT0565000.1 12 Osa12LNG0565000 21155898-21156129 intergenetic lncRNA (lincRNA) 232 39.65517 1
Osa12LNT0565100.1 12 Osa12LNG0565100 21198001-21198200 intergenetic lncRNA (lincRNA) 200 36.5 1
Osa12LNT0132700.1 12 Osa12LNG0132700 21206606-21206965 intergenetic lncRNA (lincRNA) 360 51.11111 1
Osa12LNT0132900.1 12 Osa12LNG0132900 21225806-21229401 long non-coding(lnc) isoforms of known genes 1596 44.86216 8
Osa12LNT0132800.1 12 Osa12LNG0132800 21230209-21234981 long non-coding(lnc) isoforms of known genes 1841 45.95329 11
Osa12LNT0115600.1 12 Osa12LNG0115600 2128346-2135196 long non-coding(lnc) isoforms of known genes 1978 43.88271 11
Osa12LNT0133000.1 12 Osa12LNG0133000 21293012-21296839 long non-coding(lnc) isoforms of known genes 918 53.15904 4
Osa12LNT0133100.1 12 Osa12LNG0133100 21321697-21322085 intergenetic lncRNA (lincRNA) 264 69.69697 2
Osa12LNT0133200.1 12 Osa12LNG0133200 21525477-21527878 sense lncRNA 1356 55.45723 5
Osa12LNT0133200.2 12 Osa12LNG0133200 21525477-21527878 sense lncRNA 1381 55.32223 5
Osa12LNT0133300.1 12 Osa12LNG0133300 21593933-21597000 long non-coding(lnc) isoforms of known genes 1091 51.05408 4
Osa12LNT0133400.1 12 Osa12LNG0133400 21666280-21669377 intergenetic lncRNA (lincRNA) 1395 49.46237 4
Osa12LNT0565200.1 12 Osa12LNG0565200 21718929-21719203 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa12LNT0565300.1 12 Osa12LNG0565300 21718929-21719203 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa12LNT0565400.1 12 Osa12LNG0565400 21719413-21719676 intergenetic lncRNA (lincRNA) 264 40.5303 1
Osa12LNT0565500.1 12 Osa12LNG0565500 21720735-21720979 intergenetic lncRNA (lincRNA) 245 23.26531 1
Osa12LNT0565700.1 12 Osa12LNG0565700 21931096-21931370 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0565600.1 12 Osa12LNG0565600 21931096-21931370 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0565800.1 12 Osa12LNG0565800 21937981-21938214 intergenetic lncRNA (lincRNA) 234 26.49573 1
Osa12LNT0133500.1 12 Osa12LNG0133500 21964684-21970115 long non-coding(lnc) isoforms of known genes 4267 39.72346 8
Osa12LNT0133500.2 12 Osa12LNG0133500 21964684-21970115 long non-coding(lnc) isoforms of known genes 4404 39.396 7
Osa12LNT0565900.1 12 Osa12LNG0565900 21984722-21984925 intergenetic lncRNA (lincRNA) 204 37.7451 1
Osa12LNT0133700.1 12 Osa12LNG0133700 22427863-22431789 long non-coding(lnc) isoforms of known genes 1801 51.9156 8
Osa12LNT0133600.1 12 Osa12LNG0133600 22457347-22457671 intergenetic lncRNA (lincRNA) 325 69.53846 1
Osa12LNT0133800.1 12 Osa12LNG0133800 22487469-22492398 long non-coding(lnc) isoforms of known genes 3341 44.26818 4
Osa12LNT0133900.1 12 Osa12LNG0133900 22497610-22502482 long non-coding(lnc) isoforms of known genes 4131 42.41104 3