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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0457300.1 1 Osa01LNG0457300 16230274-16230548 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa01LNT0457200.1 1 Osa01LNG0457200 16230274-16230548 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa01LNT0457500.1 1 Osa01LNG0457500 16231371-16231645 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa01LNT0457400.1 1 Osa01LNG0457400 16231371-16231645 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa01LNT0019600.1 1 Osa01LNG0019600 16232158-16234453 long non-coding(lnc) isoforms of known genes 1735 47.08934 3
Osa01LNT0019600.3 1 Osa01LNG0019600 16232158-16234453 sense lncRNA 2217 43.93324 2
Osa01LNT0019600.2 1 Osa01LNG0019600 16232158-16234453 long non-coding(lnc) isoforms of known genes 1336 50.1497 4
Osa01LNT0019700.1 1 Osa01LNG0019700 16457055-16457330 intergenetic lncRNA (lincRNA) 276 52.89855 1
Osa01LNT0019800.1 1 Osa01LNG0019800 16663408-16664018 intronic lncRNA 554 33.93502 2
Osa01LNT0457600.1 1 Osa01LNG0457600 16704312-16704566 intergenetic lncRNA (lincRNA) 255 25.09804 1
Osa01LNT0457700.1 1 Osa01LNG0457700 16704312-16704566 intergenetic lncRNA (lincRNA) 255 25.09804 1
Osa01LNT0019900.1 1 Osa01LNG0019900 16706252-16709603 long non-coding(lnc) isoforms of known genes 1298 54.6225 4
Osa01LNT0001500.1 1 Osa01LNG0001500 1673503-1677066 long non-coding(lnc) isoforms of known genes 3057 45.79653 5
Osa01LNT0020100.1 1 Osa01LNG0020100 17066982-17070785 long non-coding(lnc) isoforms of known genes 1754 50.05701 4
Osa01LNT0020100.2 1 Osa01LNG0020100 17066982-17070785 long non-coding(lnc) isoforms of known genes 1758 50.11377 4
Osa01LNT0020000.1 1 Osa01LNG0020000 17075829-17077551 intergenetic lncRNA (lincRNA) 579 44.55959 4
Osa01LNT0020000.2 1 Osa01LNG0020000 17075829-17077551 intergenetic lncRNA (lincRNA) 525 44.38095 3
Osa01LNT0020200.1 1 Osa01LNG0020200 17210257-17218276 long non-coding(lnc) isoforms of known genes 2299 46.71596 14
Osa01LNT0020300.1 1 Osa01LNG0020300 17266185-17274780 long non-coding(lnc) isoforms of known genes 4406 46.77712 3
Osa01LNT0020400.1 1 Osa01LNG0020400 17454123-17464765 long non-coding(lnc) isoforms of known genes 4096 38.08594 11
Osa01LNT0020400.2 1 Osa01LNG0020400 17454123-17464765 long non-coding(lnc) isoforms of known genes 2452 44.57586 12
Osa01LNT0457800.1 1 Osa01LNG0457800 17500588-17500872 intergenetic lncRNA (lincRNA) 285 40.70175 1
Osa01LNT0020500.1 1 Osa01LNG0020500 17681921-17682194 Antisense lncRNA 274 47.08029 1
Osa01LNT0458000.1 1 Osa01LNG0458000 17722103-17722378 intergenetic lncRNA (lincRNA) 276 26.44928 1
Osa01LNT0457900.1 1 Osa01LNG0457900 17722103-17722378 intergenetic lncRNA (lincRNA) 276 26.44928 1
Osa01LNT0458200.1 1 Osa01LNG0458200 17845018-17845292 intergenetic lncRNA (lincRNA) 275 29.81818 1
Osa01LNT0458100.1 1 Osa01LNG0458100 17845018-17845292 intergenetic lncRNA (lincRNA) 275 29.81818 1
Osa01LNT0020600.1 1 Osa01LNG0020600 17959148-17959560 intergenetic lncRNA (lincRNA) 413 60.53269 1
Osa01LNT0001700.1 1 Osa01LNG0001700 1801983-1817601 long non-coding(lnc) isoforms of known genes 3524 53.57548 11
Osa01LNT0020700.1 1 Osa01LNG0020700 18087603-18095451 long non-coding(lnc) isoforms of known genes 1892 53.11839 8
Osa01LNT0020800.1 1 Osa01LNG0020800 18101569-18111525 long non-coding(lnc) isoforms of known genes 1873 53.23011 9
Osa01LNT0020900.1 1 Osa01LNG0020900 18298221-18303977 long non-coding(lnc) isoforms of known genes 2013 55.68803 4
Osa01LNT0458300.1 1 Osa01LNG0458300 18431205-18431409 intergenetic lncRNA (lincRNA) 205 41.95122 1
Osa01LNT0021000.1 1 Osa01LNG0021000 18459160-18463671 sense lncRNA 2861 49.73785 3
Osa01LNT0021000.2 1 Osa01LNG0021000 18459160-18463671 sense lncRNA 3440 47.5 2
Osa01LNT0021000.3 1 Osa01LNG0021000 18459160-18463671 sense lncRNA 2839 49.77105 3
Osa01LNT0021100.2 1 Osa01LNG0021100 18531902-18541385 long non-coding(lnc) isoforms of known genes 4778 40.58183 5
Osa01LNT0021100.1 1 Osa01LNG0021100 18531902-18541385 long non-coding(lnc) isoforms of known genes 4795 40.62565 5
Osa01LNT0021200.1 1 Osa01LNG0021200 18584847-18588817 long non-coding(lnc) isoforms of known genes 2554 44.16601 7
Osa01LNT0021200.2 1 Osa01LNG0021200 18584847-18588817 long non-coding(lnc) isoforms of known genes 2637 43.1551 7
Osa01LNT0021300.1 1 Osa01LNG0021300 18587762-18588817 Antisense lncRNA 492 39.8374 3
Osa01LNT0021300.2 1 Osa01LNG0021300 18587762-18588817 intergenetic lncRNA (lincRNA) 530 34.71698 2
Osa01LNT0021500.1 1 Osa01LNG0021500 18674885-18675997 intergenetic lncRNA (lincRNA) 1004 45.21912 2
Osa01LNT0021400.1 1 Osa01LNG0021400 18684949-18685167 intergenetic lncRNA (lincRNA) 219 54.79452 1
Osa01LNT0458400.1 1 Osa01LNG0458400 18957497-18957722 intergenetic lncRNA (lincRNA) 226 47.78761 1
Osa01LNT0001800.1 1 Osa01LNG0001800 1906717-1908574 sense lncRNA 1454 62.24209 2
Osa01LNT0021600.1 1 Osa01LNG0021600 19106717-19107489 intergenetic lncRNA (lincRNA) 686 57.58017 2
Osa01LNT0021700.1 1 Osa01LNG0021700 19110830-19122402 long non-coding(lnc) isoforms of known genes 4006 48.82676 8
Osa01LNT0021800.1 1 Osa01LNG0021800 19129984-19134017 long non-coding(lnc) isoforms of known genes 1610 52.36025 4
Osa01LNT0021900.1 1 Osa01LNG0021900 19178310-19192331 long non-coding(lnc) isoforms of known genes 3821 46.66318 30
Osa01LNT0001900.1 1 Osa01LNG0001900 1926905-1927547 intergenetic lncRNA (lincRNA) 643 55.83204 1
Osa01LNT0022000.1 1 Osa01LNG0022000 19303393-19319879 long non-coding(lnc) isoforms of known genes 5296 41.61631 37
Osa01LNT0022100.1 1 Osa01LNG0022100 19454154-19458225 long non-coding(lnc) isoforms of known genes 3339 47.88859 8
Osa01LNT0022100.2 1 Osa01LNG0022100 19454154-19458225 long non-coding(lnc) isoforms of known genes 2862 48.25297 8
Osa01LNT0022200.1 1 Osa01LNG0022200 19469262-19477590 long non-coding(lnc) isoforms of known genes 1906 45.12067 14
Osa01LNT0002000.1 1 Osa01LNG0002000 1957495-1961530 Antisense lncRNA 1345 57.24907 2
Osa01LNT0002100.1 1 Osa01LNG0002100 1957847-1962653 long non-coding(lnc) isoforms of known genes 2409 48.15276 4
Osa01LNT0022300.1 1 Osa01LNG0022300 19578486-19579041 intergenetic lncRNA (lincRNA) 556 59.53237 1
Osa01LNT0458600.1 1 Osa01LNG0458600 19738355-19738629 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa01LNT0458500.1 1 Osa01LNG0458500 19738355-19738629 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa01LNT0458700.1 1 Osa01LNG0458700 19822898-19823148 intergenetic lncRNA (lincRNA) 251 27.49004 1
Osa01LNT0458800.1 1 Osa01LNG0458800 19822898-19823148 intergenetic lncRNA (lincRNA) 251 27.49004 1
Osa01LNT0458900.1 1 Osa01LNG0458900 19823216-19823459 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa01LNT0022400.1 1 Osa01LNG0022400 19845644-19848399 sense lncRNA 1281 52.0687 4
Osa01LNT0022600.1 1 Osa01LNG0022600 19962930-19970099 long non-coding(lnc) isoforms of known genes 2417 47.78651 12
Osa01LNT0022500.1 1 Osa01LNG0022500 19988588-19988884 intergenetic lncRNA (lincRNA) 297 46.46465 1
Osa01LNT0459000.1 1 Osa01LNG0459000 20068894-20069151 intergenetic lncRNA (lincRNA) 258 26.35659 1
Osa01LNT0459100.1 1 Osa01LNG0459100 20068894-20069151 intergenetic lncRNA (lincRNA) 258 26.35659 1
Osa01LNT0022800.1 1 Osa01LNG0022800 20197318-20199817 sense lncRNA 2412 39.09619 2
Osa01LNT0022700.1 1 Osa01LNG0022700 20296917-20302467 long non-coding(lnc) isoforms of known genes 1141 43.29535 8
Osa01LNT0022900.1 1 Osa01LNG0022900 20351629-20364373 long non-coding(lnc) isoforms of known genes 3924 44.92864 12
Osa01LNT0023000.1 1 Osa01LNG0023000 20380989-20384879 long non-coding(lnc) isoforms of known genes 1943 49.1508 4
Osa01LNT0023200.1 1 Osa01LNG0023200 20407488-20414976 long non-coding(lnc) isoforms of known genes 2707 39.00997 15
Osa01LNT0023100.1 1 Osa01LNG0023100 20450218-20450982 intergenetic lncRNA (lincRNA) 765 48.36601 1
Osa01LNT0002200.1 1 Osa01LNG0002200 2046218-2053056 long non-coding(lnc) isoforms of known genes 894 52.57271 2
Osa01LNT0023300.1 1 Osa01LNG0023300 20464727-20469249 long non-coding(lnc) isoforms of known genes 3201 47.64136 6
Osa01LNT0023400.1 1 Osa01LNG0023400 20489229-20501754 long non-coding(lnc) isoforms of known genes 2621 47.00496 19
Osa01LNT0023400.2 1 Osa01LNG0023400 20489229-20501754 long non-coding(lnc) isoforms of known genes 2644 46.78517 19
Osa01LNT0023700.1 1 Osa01LNG0023700 20717034-20727200 long non-coding(lnc) isoforms of known genes 5250 41.25714 15
Osa01LNT0023800.1 1 Osa01LNG0023800 20726005-20730085 long non-coding(lnc) isoforms of known genes 2773 49.87378 3
Osa01LNT0023500.2 1 Osa01LNG0023500 20731076-20733672 intergenetic lncRNA (lincRNA) 1596 41.91729 4
Osa01LNT0023500.1 1 Osa01LNG0023500 20731076-20733672 intergenetic lncRNA (lincRNA) 2061 40.65987 3
Osa01LNT0023600.1 1 Osa01LNG0023600 20746789-20750441 long non-coding(lnc) isoforms of known genes 2308 45.01733 4
Osa01LNT0002300.1 1 Osa01LNG0002300 2074795-2077891 long non-coding(lnc) isoforms of known genes 2310 49.17749 6
Osa01LNT0023900.1 1 Osa01LNG0023900 20950272-20955520 long non-coding(lnc) isoforms of known genes 1246 53.77207 5
Osa01LNT0024000.1 1 Osa01LNG0024000 21038211-21039165 Antisense lncRNA 770 49.74026 2
Osa01LNT0454400.1 1 Osa01LNG0454400 2130008-2130240 intergenetic lncRNA (lincRNA) 233 23.17597 1
Osa01LNT0024400.1 1 Osa01LNG0024400 21414031-21414589 intergenetic lncRNA (lincRNA) 559 44.36494 1
Osa01LNT0024100.1 1 Osa01LNG0024100 21447489-21450077 long non-coding(lnc) isoforms of known genes 1000 49.7 5
Osa01LNT0024200.1 1 Osa01LNG0024200 21534121-21537684 long non-coding(lnc) isoforms of known genes 1068 50.37453 6
Osa01LNT0024300.1 1 Osa01LNG0024300 21623761-21626735 long non-coding(lnc) isoforms of known genes 848 54.83491 5
Osa01LNT0024500.1 1 Osa01LNG0024500 21637202-21643059 long non-coding(lnc) isoforms of known genes 2609 48.8693 4
Osa01LNT0024600.1 1 Osa01LNG0024600 21687373-21689620 sense lncRNA 2139 61.57083 2
Osa01LNT0024700.1 1 Osa01LNG0024700 21922198-21923969 sense lncRNA 1312 41.23476 2
Osa01LNT0024800.2 1 Osa01LNG0024800 22021849-22027269 long non-coding(lnc) isoforms of known genes 1869 52.86249 7
Osa01LNT0024800.1 1 Osa01LNG0024800 22021849-22027269 long non-coding(lnc) isoforms of known genes 1808 53.20796 7
Osa01LNT0024900.1 1 Osa01LNG0024900 22088204-22091018 long non-coding(lnc) isoforms of known genes 1257 55.13126 11
Osa01LNT0025000.1 1 Osa01LNG0025000 22423500-22423747 intergenetic lncRNA (lincRNA) 248 61.29032 1
Osa01LNT0025100.1 1 Osa01LNG0025100 22439040-22441966 long non-coding(lnc) isoforms of known genes 1412 43.4136 8
Osa01LNT0025100.2 1 Osa01LNG0025100 22439040-22441966 long non-coding(lnc) isoforms of known genes 1299 43.64896 8