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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0454300.1 1 Osa01LNG0454300 1299679-1299923 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa01LNT0016400.1 1 Osa01LNG0016400 13174586-13174971 intergenetic lncRNA (lincRNA) 386 59.84456 1
Osa01LNT0016700.1 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 3384 41.60757 26
Osa01LNT0016700.3 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 6408 39.34145 25
Osa01LNT0016700.2 1 Osa01LNG0016700 13246387-13262169 long non-coding(lnc) isoforms of known genes 3419 42.17607 25
Osa01LNT0016600.1 1 Osa01LNG0016600 13294354-13294933 sense lncRNA 419 39.14081 2
Osa01LNT0016800.1 1 Osa01LNG0016800 13319342-13323798 long non-coding(lnc) isoforms of known genes 1341 50.63386 6
Osa01LNT0016900.1 1 Osa01LNG0016900 13389163-13392419 intergenetic lncRNA (lincRNA) 770 33.76623 2
Osa01LNT0017000.1 1 Osa01LNG0017000 13527300-13527580 intronic lncRNA 281 30.96085 1
Osa01LNT0017200.1 1 Osa01LNG0017200 13582078-13584915 long non-coding(lnc) isoforms of known genes 1188 50.50505 8
Osa01LNT0456300.1 1 Osa01LNG0456300 13697749-13697961 intergenetic lncRNA (lincRNA) 213 49.76526 1
Osa01LNT0017100.1 1 Osa01LNG0017100 13713086-13715124 intergenetic lncRNA (lincRNA) 1812 46.79912 2
Osa01LNT0017300.1 1 Osa01LNG0017300 13799955-13804722 long non-coding(lnc) isoforms of known genes 2649 49.03737 7
Osa01LNT0456500.1 1 Osa01LNG0456500 13919146-13919420 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa01LNT0456400.1 1 Osa01LNG0456400 13919146-13919420 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa01LNT0456600.1 1 Osa01LNG0456600 14259115-14259317 intergenetic lncRNA (lincRNA) 203 33.00493 1
Osa01LNT0017400.1 1 Osa01LNG0017400 14392028-14398576 long non-coding(lnc) isoforms of known genes 1745 45.27221 7
Osa01LNT0017400.3 1 Osa01LNG0017400 14392028-14398576 long non-coding(lnc) isoforms of known genes 2585 43.17215 6
Osa01LNT0017400.2 1 Osa01LNG0017400 14392028-14398576 long non-coding(lnc) isoforms of known genes 1630 44.47853 7
Osa01LNT0017500.1 1 Osa01LNG0017500 14457388-14458070 intergenetic lncRNA (lincRNA) 683 42.45974 1
Osa01LNT0017600.1 1 Osa01LNG0017600 14551012-14551278 intergenetic lncRNA (lincRNA) 267 38.20225 1
Osa01LNT0017700.1 1 Osa01LNG0017700 14553516-14554163 intergenetic lncRNA (lincRNA) 648 28.39506 1
Osa01LNT0017800.1 1 Osa01LNG0017800 14576601-14581963 sense lncRNA 4923 42.53504 2
Osa01LNT0017900.1 1 Osa01LNG0017900 14597822-14604783 sense lncRNA 4824 41.85323 5
Osa01LNT0018200.1 1 Osa01LNG0018200 14622914-14623796 long non-coding(lnc) isoforms of known genes 703 44.95021 2
Osa01LNT0018000.1 1 Osa01LNG0018000 14679350-14683391 long non-coding(lnc) isoforms of known genes 1355 43.32103 3
Osa01LNT0018100.1 1 Osa01LNG0018100 14702436-14705998 long non-coding(lnc) isoforms of known genes 1553 56.66452 5
Osa01LNT0018300.1 1 Osa01LNG0018300 14731816-14738424 long non-coding(lnc) isoforms of known genes 2880 45.0 12
Osa01LNT0018400.1 1 Osa01LNG0018400 14742684-14745036 sense lncRNA 835 51.01796 4
Osa01LNT0018500.1 1 Osa01LNG0018500 14744468-14744702 intergenetic lncRNA (lincRNA) 235 33.61702 1
Osa01LNT0018600.2 1 Osa01LNG0018600 14745275-14747937 Antisense lncRNA 993 47.33132 10
Osa01LNT0018600.1 1 Osa01LNG0018600 14745275-14747937 Antisense lncRNA 976 47.64344 10
Osa01LNT0018900.1 1 Osa01LNG0018900 14754865-14764487 long non-coding(lnc) isoforms of known genes 2901 46.88039 12
Osa01LNT0018700.1 1 Osa01LNG0018700 14775727-14777993 intergenetic lncRNA (lincRNA) 932 49.67811 3
Osa01LNT0018800.1 1 Osa01LNG0018800 14783393-14785500 long non-coding(lnc) isoforms of known genes 1216 42.43421 3
Osa01LNT0019000.1 1 Osa01LNG0019000 14798988-14801247 long non-coding(lnc) isoforms of known genes 893 54.75924 3
Osa01LNT0019100.1 1 Osa01LNG0019100 14955728-14959343 sense lncRNA 2246 39.09172 3
Osa01LNT0019100.2 1 Osa01LNG0019100 14955728-14959343 sense lncRNA 1986 39.47633 4
Osa01LNT0019200.1 1 Osa01LNG0019200 15019933-15023923 long non-coding(lnc) isoforms of known genes 1117 50.76097 9
Osa01LNT0019300.1 1 Osa01LNG0019300 15414881-15421118 sense lncRNA 4242 46.95898 6
Osa01LNT0456700.1 1 Osa01LNG0456700 15579586-15579860 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa01LNT0019400.1 1 Osa01LNG0019400 15672663-15675607 sense lncRNA 920 62.28261 3
Osa01LNT0001600.1 1 Osa01LNG0001600 1569644-1576596 long non-coding(lnc) isoforms of known genes 3663 55.74666 15
Osa01LNT0001600.2 1 Osa01LNG0001600 1569644-1576596 long non-coding(lnc) isoforms of known genes 2642 51.02195 9
Osa01LNT0456800.1 1 Osa01LNG0456800 15797272-15797480 intergenetic lncRNA (lincRNA) 209 32.53589 1
Osa01LNT0457000.1 1 Osa01LNG0457000 16124687-16124959 intergenetic lncRNA (lincRNA) 273 23.44322 1
Osa01LNT0456900.1 1 Osa01LNG0456900 16124687-16124959 intergenetic lncRNA (lincRNA) 273 23.44322 1
Osa01LNT0457100.1 1 Osa01LNG0457100 16132800-16133066 intergenetic lncRNA (lincRNA) 267 25.46816 1
Osa01LNT0019500.2 1 Osa01LNG0019500 16202445-16205296 intergenetic lncRNA (lincRNA) 1328 44.95482 3
Osa01LNT0019500.1 1 Osa01LNG0019500 16202445-16205296 intergenetic lncRNA (lincRNA) 1370 44.45255 3