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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0134000.1 12 Osa12LNG0134000 22530250-22535023 long non-coding(lnc) isoforms of known genes 2160 51.2963 7
Osa12LNT0134100.1 12 Osa12LNG0134100 22723237-22726823 long non-coding(lnc) isoforms of known genes 3335 48.51574 3
Osa12LNT0134200.1 12 Osa12LNG0134200 22782338-22785768 long non-coding(lnc) isoforms of known genes 2043 47.13656 5
Osa12LNT0566000.1 12 Osa12LNG0566000 22828746-22829020 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0566100.1 12 Osa12LNG0566100 22828746-22829020 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0115700.1 12 Osa12LNG0115700 2285050-2287399 sense lncRNA 640 39.53125 2
Osa12LNT0134300.1 12 Osa12LNG0134300 22947734-22951075 long non-coding(lnc) isoforms of known genes 1232 53.8961 3
Osa12LNT0134400.1 12 Osa12LNG0134400 22969436-22972367 sense lncRNA 547 49.54296 2
Osa12LNT0134600.1 12 Osa12LNG0134600 22972925-22976141 long non-coding(lnc) isoforms of known genes 2226 50.9434 7
Osa12LNT0134500.1 12 Osa12LNG0134500 23000063-23001479 sense lncRNA 1246 51.76565 2
Osa12LNT0558800.1 12 Osa12LNG0558800 2307313-2307567 intronic lncRNA 255 28.62745 1
Osa12LNT0134700.1 12 Osa12LNG0134700 23135061-23137352 sense lncRNA 1299 52.27098 3
Osa12LNT0134900.1 12 Osa12LNG0134900 23157167-23164663 long non-coding(lnc) isoforms of known genes 3940 43.4264 13
Osa12LNT0135000.1 12 Osa12LNG0135000 23157388-23160048 long non-coding(lnc) isoforms of known genes 2141 42.26997 5
Osa12LNT0134800.1 12 Osa12LNG0134800 23167007-23171932 long non-coding(lnc) isoforms of known genes 3477 42.65171 3
Osa12LNT0566200.1 12 Osa12LNG0566200 23232839-23233094 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa12LNT0135100.1 12 Osa12LNG0135100 23256135-23258644 long non-coding(lnc) isoforms of known genes 680 46.76471 5
Osa12LNT0135200.1 12 Osa12LNG0135200 23302326-23306289 long non-coding(lnc) isoforms of known genes 1687 51.9265 10
Osa12LNT0135400.1 12 Osa12LNG0135400 23307980-23312202 long non-coding(lnc) isoforms of known genes 1730 50.52023 10
Osa12LNT0135300.1 12 Osa12LNG0135300 23325673-23327055 long non-coding(lnc) isoforms of known genes 1294 47.75889 2
Osa12LNT0566300.1 12 Osa12LNG0566300 23380625-23380875 intergenetic lncRNA (lincRNA) 251 26.69323 1
Osa12LNT0566400.1 12 Osa12LNG0566400 23380625-23380875 intergenetic lncRNA (lincRNA) 251 26.69323 1
Osa12LNT0135500.1 12 Osa12LNG0135500 23439985-23440626 intergenetic lncRNA (lincRNA) 642 48.2866 1
Osa12LNT0566500.1 12 Osa12LNG0566500 23505800-23506027 intergenetic lncRNA (lincRNA) 228 49.5614 1
Osa12LNT0135600.1 12 Osa12LNG0135600 23584169-23593482 long non-coding(lnc) isoforms of known genes 1222 53.68249 9
Osa12LNT0135600.3 12 Osa12LNG0135600 23584169-23593482 long non-coding(lnc) isoforms of known genes 1724 47.96984 8
Osa12LNT0135600.2 12 Osa12LNG0135600 23584169-23593482 long non-coding(lnc) isoforms of known genes 1613 48.97706 9
Osa12LNT0566600.1 12 Osa12LNG0566600 23616192-23616419 intergenetic lncRNA (lincRNA) 228 28.50877 1
Osa12LNT0135700.1 12 Osa12LNG0135700 23687585-23691381 long non-coding(lnc) isoforms of known genes 2116 54.86767 12
Osa12LNT0135800.1 12 Osa12LNG0135800 23709599-23710682 Antisense lncRNA 657 50.68493 2
Osa12LNT0135900.1 12 Osa12LNG0135900 23725985-23734930 long non-coding(lnc) isoforms of known genes 4782 52.53032 16
Osa12LNT0136000.1 12 Osa12LNG0136000 23805228-23808859 long non-coding(lnc) isoforms of known genes 2227 47.05882 12
Osa12LNT0136100.1 12 Osa12LNG0136100 23823851-23829508 long non-coding(lnc) isoforms of known genes 2652 44.34389 8
Osa12LNT0136200.1 12 Osa12LNG0136200 23952505-23956048 long non-coding(lnc) isoforms of known genes 1726 51.3905 5
Osa12LNT0115800.1 12 Osa12LNG0115800 2397816-2398934 intergenetic lncRNA (lincRNA) 584 44.34932 2
Osa12LNT0566700.1 12 Osa12LNG0566700 24150599-24150810 intergenetic lncRNA (lincRNA) 212 28.77358 1
Osa12LNT0136300.1 12 Osa12LNG0136300 24204768-24208081 long non-coding(lnc) isoforms of known genes 1466 46.86221 7
Osa12LNT0115900.1 12 Osa12LNG0115900 2427464-2430081 sense lncRNA 1265 55.96838 2
Osa12LNT0136400.1 12 Osa12LNG0136400 24459198-24462001 long non-coding(lnc) isoforms of known genes 1867 48.68773 8
Osa12LNT0566800.1 12 Osa12LNG0566800 24501087-24501323 intergenetic lncRNA (lincRNA) 237 26.16034 1
Osa12LNT0136500.1 12 Osa12LNG0136500 24507244-24509054 intergenetic lncRNA (lincRNA) 1811 42.46273 1
Osa12LNT0136600.1 12 Osa12LNG0136600 24539844-24540859 intergenetic lncRNA (lincRNA) 1016 41.24016 1
Osa12LNT0566900.1 12 Osa12LNG0566900 24548139-24548364 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa12LNT0136700.1 12 Osa12LNG0136700 24815344-24817377 long non-coding(lnc) isoforms of known genes 544 58.63971 3
Osa12LNT0567000.1 12 Osa12LNG0567000 24821045-24821315 Antisense lncRNA 271 54.24354 1
Osa12LNT0567100.1 12 Osa12LNG0567100 24900485-24900748 intergenetic lncRNA (lincRNA) 264 21.59091 1
Osa12LNT0136800.1 12 Osa12LNG0136800 25001867-25003359 sense lncRNA 795 54.71698 2
Osa12LNT0567200.1 12 Osa12LNG0567200 25133408-25133681 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa12LNT0567300.1 12 Osa12LNG0567300 25133408-25133681 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa12LNT0136900.1 12 Osa12LNG0136900 25247754-25253940 long non-coding(lnc) isoforms of known genes 2049 50.90288 7
Osa12LNT0137000.1 12 Osa12LNG0137000 25536231-25544911 long non-coding(lnc) isoforms of known genes 5350 51.73832 6
Osa12LNT0567500.1 12 Osa12LNG0567500 25667176-25667448 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa12LNT0567400.1 12 Osa12LNG0567400 25667176-25667448 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa12LNT0137100.1 12 Osa12LNG0137100 25702141-25706956 long non-coding(lnc) isoforms of known genes 2248 46.84164 11
Osa12LNT0137200.1 12 Osa12LNG0137200 25812404-25814776 sense lncRNA 2255 38.44789 2
Osa12LNT0567600.1 12 Osa12LNG0567600 25820180-25820417 intergenetic lncRNA (lincRNA) 238 29.83193 1
Osa12LNT0137300.2 12 Osa12LNG0137300 25820882-25824643 long non-coding(lnc) isoforms of known genes 1665 45.40541 7
Osa12LNT0137300.1 12 Osa12LNG0137300 25820882-25824643 long non-coding(lnc) isoforms of known genes 2176 43.15257 7
Osa12LNT0116000.1 12 Osa12LNG0116000 2587283-2587861 intergenetic lncRNA (lincRNA) 579 37.3057 1
Osa12LNT0567700.1 12 Osa12LNG0567700 25899150-25899403 intergenetic lncRNA (lincRNA) 254 28.34646 1
Osa12LNT0137400.1 12 Osa12LNG0137400 25911188-25914635 long non-coding(lnc) isoforms of known genes 2817 48.5978 3
Osa12LNT0116100.1 12 Osa12LNG0116100 2592147-2594898 sense lncRNA 2658 49.73664 2
Osa12LNT0567800.1 12 Osa12LNG0567800 25951019-25951270 intergenetic lncRNA (lincRNA) 252 47.61905 1
Osa12LNT0137500.1 12 Osa12LNG0137500 25953474-25957331 long non-coding(lnc) isoforms of known genes 1957 43.63822 5
Osa12LNT0137600.1 12 Osa12LNG0137600 25965112-25976050 long non-coding(lnc) isoforms of known genes 5912 43.1157 19
Osa12LNT0137700.1 12 Osa12LNG0137700 26002370-26008343 long non-coding(lnc) isoforms of known genes 3887 49.70414 14
Osa12LNT0116200.1 12 Osa12LNG0116200 2600996-2602026 sense lncRNA 447 47.42729 2
Osa12LNT0137800.2 12 Osa12LNG0137800 26104095-26109736 long non-coding(lnc) isoforms of known genes 2341 46.47587 19
Osa12LNT0137800.1 12 Osa12LNG0137800 26104095-26109736 long non-coding(lnc) isoforms of known genes 2388 43.59296 10
Osa12LNT0137800.3 12 Osa12LNG0137800 26104095-26109736 long non-coding(lnc) isoforms of known genes 2150 43.44186 9
Osa12LNT0137800.4 12 Osa12LNG0137800 26104095-26109736 long non-coding(lnc) isoforms of known genes 2058 43.73178 10
Osa12LNT0567900.1 12 Osa12LNG0567900 26258108-26258312 intergenetic lncRNA (lincRNA) 205 23.90244 1
Osa12LNT0137900.1 12 Osa12LNG0137900 26300176-26306140 long non-coding(lnc) isoforms of known genes 2990 48.69565 18
Osa12LNT0138000.1 12 Osa12LNG0138000 26448177-26448697 intergenetic lncRNA (lincRNA) 521 49.32821 1
Osa12LNT0138100.1 12 Osa12LNG0138100 26502398-26504588 long non-coding(lnc) isoforms of known genes 2112 44.27083 2
Osa12LNT0138200.1 12 Osa12LNG0138200 26560221-26562019 long non-coding(lnc) isoforms of known genes 1616 41.4604 3
Osa12LNT0116300.1 12 Osa12LNG0116300 2662059-2666737 long non-coding(lnc) isoforms of known genes 2822 44.57831 7
Osa12LNT0138300.1 12 Osa12LNG0138300 26780504-26783576 long non-coding(lnc) isoforms of known genes 2463 48.55867 5
Osa12LNT0111900.1 12 Osa12LNG0111900 267897-270180 long non-coding(lnc) isoforms of known genes 899 49.05451 8
Osa12LNT0568000.1 12 Osa12LNG0568000 26856656-26856930 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0568100.1 12 Osa12LNG0568100 26856656-26856930 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0568200.1 12 Osa12LNG0568200 26936854-26937087 intergenetic lncRNA (lincRNA) 234 38.46154 1
Osa12LNT0138400.2 12 Osa12LNG0138400 26997525-27005262 long non-coding(lnc) isoforms of known genes 3381 47.20497 15
Osa12LNT0138400.1 12 Osa12LNG0138400 26997525-27005262 long non-coding(lnc) isoforms of known genes 3902 45.48949 15
Osa12LNT0138400.3 12 Osa12LNG0138400 26997525-27005262 long non-coding(lnc) isoforms of known genes 2804 49.92867 16
Osa12LNT0138400.4 12 Osa12LNG0138400 26997525-27005262 long non-coding(lnc) isoforms of known genes 1477 40.01354 10
Osa12LNT0568300.1 12 Osa12LNG0568300 27042455-27042670 intergenetic lncRNA (lincRNA) 216 35.64815 1
Osa12LNT0138600.1 12 Osa12LNG0138600 27052087-27056936 long non-coding(lnc) isoforms of known genes 2176 52.11397 15
Osa12LNT0138500.1 12 Osa12LNG0138500 27061650-27063765 long non-coding(lnc) isoforms of known genes 1065 46.47887 3
Osa12LNT0138700.1 12 Osa12LNG0138700 27074048-27077613 long non-coding(lnc) isoforms of known genes 814 55.77396 3
Osa12LNT0116400.1 12 Osa12LNG0116400 2708503-2712809 long non-coding(lnc) isoforms of known genes 1587 49.84247 5
Osa12LNT0568400.1 12 Osa12LNG0568400 27294906-27295112 intergenetic lncRNA (lincRNA) 207 22.70531 1
Osa12LNT0138800.1 12 Osa12LNG0138800 27354165-27355130 intergenetic lncRNA (lincRNA) 966 30.0207 1
Osa12LNT0138900.1 12 Osa12LNG0138900 27478630-27486520 long non-coding(lnc) isoforms of known genes 5226 42.21202 13
Osa12LNT0138900.2 12 Osa12LNG0138900 27478630-27486520 long non-coding(lnc) isoforms of known genes 5105 42.35064 14
Osa12LNT0138900.4 12 Osa12LNG0138900 27478630-27486520 long non-coding(lnc) isoforms of known genes 5163 42.74647 15
Osa12LNT0138900.3 12 Osa12LNG0138900 27478630-27486520 long non-coding(lnc) isoforms of known genes 5284 42.6003 14
Osa12LNT0139000.2 12 Osa12LNG0139000 27494074-27508326 long non-coding(lnc) isoforms of known genes 4719 43.48379 22
Osa12LNT0139000.1 12 Osa12LNG0139000 27494074-27508326 long non-coding(lnc) isoforms of known genes 4022 45.49975 24
Osa12LNT0139100.2 12 Osa12LNG0139100 27514136-27529682 long non-coding(lnc) isoforms of known genes 5754 43.86514 20