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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0139100.1 12 Osa12LNG0139100 27514136-27529682 long non-coding(lnc) isoforms of known genes 5064 45.30016 22
Osa12LNT0116500.1 12 Osa12LNG0116500 2835581-2840683 sense lncRNA 945 48.99471 3
Osa12LNT0558900.1 12 Osa12LNG0558900 2847416-2847625 intergenetic lncRNA (lincRNA) 210 34.28571 1
Osa12LNT0116600.1 12 Osa12LNG0116600 2851930-2856262 long non-coding(lnc) isoforms of known genes 1529 49.70569 8
Osa12LNT0116700.1 12 Osa12LNG0116700 2984590-2984836 intergenetic lncRNA (lincRNA) 247 37.24696 1
Osa12LNT0116800.1 12 Osa12LNG0116800 2986536-2993307 long non-coding(lnc) isoforms of known genes 2550 46.31373 12
Osa12LNT0112000.1 12 Osa12LNG0112000 306553-310706 long non-coding(lnc) isoforms of known genes 2537 46.35396 11
Osa12LNT0116900.1 12 Osa12LNG0116900 3092879-3093791 intergenetic lncRNA (lincRNA) 913 44.79737 1
Osa12LNT0117000.1 12 Osa12LNG0117000 3100904-3110416 long non-coding(lnc) isoforms of known genes 2590 46.37066 5
Osa12LNT0117100.1 12 Osa12LNG0117100 3118084-3124832 long non-coding(lnc) isoforms of known genes 3088 44.81865 6
Osa12LNT0112100.1 12 Osa12LNG0112100 315343-318555 long non-coding(lnc) isoforms of known genes 1423 49.3324 5
Osa12LNT0117200.1 12 Osa12LNG0117200 3179975-3184783 long non-coding(lnc) isoforms of known genes 4246 45.40744 2
Osa12LNT0117300.1 12 Osa12LNG0117300 3187804-3190071 long non-coding(lnc) isoforms of known genes 1002 57.28543 5
Osa12LNT0117400.1 12 Osa12LNG0117400 3219107-3222884 long non-coding(lnc) isoforms of known genes 3340 41.10778 2
Osa12LNT0117500.1 12 Osa12LNG0117500 3296798-3302844 long non-coding(lnc) isoforms of known genes 3070 48.82736 14
Osa12LNT0117500.2 12 Osa12LNG0117500 3296798-3302844 long non-coding(lnc) isoforms of known genes 3078 48.83041 14
Osa12LNT0117600.1 12 Osa12LNG0117600 3402727-3407039 long non-coding(lnc) isoforms of known genes 3175 44.0 8
Osa12LNT0117700.1 12 Osa12LNG0117700 3449529-3454055 long non-coding(lnc) isoforms of known genes 1493 49.29672 5
Osa12LNT0117800.2 12 Osa12LNG0117800 3503125-3509255 long non-coding(lnc) isoforms of known genes 2902 51.82633 18
Osa12LNT0117800.1 12 Osa12LNG0117800 3503125-3509255 long non-coding(lnc) isoforms of known genes 2163 55.66343 18
Osa12LNT0117900.1 12 Osa12LNG0117900 3527480-3528162 intergenetic lncRNA (lincRNA) 683 60.76135 1
Osa12LNT0118000.1 12 Osa12LNG0118000 3531395-3536426 long non-coding(lnc) isoforms of known genes 2193 50.114 13
Osa12LNT0118100.1 12 Osa12LNG0118100 3567096-3571971 long non-coding(lnc) isoforms of known genes 2860 43.42657 3
Osa12LNT0118100.2 12 Osa12LNG0118100 3567096-3571971 long non-coding(lnc) isoforms of known genes 2330 46.56652 4
Osa12LNT0118200.1 12 Osa12LNG0118200 3782048-3782479 intergenetic lncRNA (lincRNA) 432 53.24074 1
Osa12LNT0118300.1 12 Osa12LNG0118300 3861470-3863929 long non-coding(lnc) isoforms of known genes 1470 58.09524 4
Osa12LNT0558200.1 12 Osa12LNG0558200 395314-395515 intergenetic lncRNA (lincRNA) 202 38.11881 1
Osa12LNT0118400.1 12 Osa12LNG0118400 4032261-4036962 long non-coding(lnc) isoforms of known genes 1676 45.22673 11
Osa12LNT0118500.1 12 Osa12LNG0118500 4074810-4080689 long non-coding(lnc) isoforms of known genes 1026 53.89864 9
Osa12LNT0118500.4 12 Osa12LNG0118500 4074810-4080689 long non-coding(lnc) isoforms of known genes 1159 54.78861 8
Osa12LNT0118500.3 12 Osa12LNG0118500 4074810-4080689 long non-coding(lnc) isoforms of known genes 1339 53.24869 6
Osa12LNT0118500.2 12 Osa12LNG0118500 4074810-4080689 long non-coding(lnc) isoforms of known genes 1273 53.49568 7
Osa12LNT0118700.1 12 Osa12LNG0118700 4144916-4146539 long non-coding(lnc) isoforms of known genes 1520 65.19737 2
Osa12LNT0118600.1 12 Osa12LNG0118600 4157056-4157542 intergenetic lncRNA (lincRNA) 487 43.12115 1
Osa12LNT0118800.1 12 Osa12LNG0118800 4213109-4213806 long non-coding(lnc) isoforms of known genes 509 40.86444 3
Osa12LNT0118900.1 12 Osa12LNG0118900 4216583-4219627 long non-coding(lnc) isoforms of known genes 1529 51.34075 8
Osa12LNT0559000.1 12 Osa12LNG0559000 4227303-4227577 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0559100.1 12 Osa12LNG0559100 4227303-4227577 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0559200.1 12 Osa12LNG0559200 4227645-4227889 intergenetic lncRNA (lincRNA) 245 24.89796 1
Osa12LNT0112200.1 12 Osa12LNG0112200 439128-443649 long non-coding(lnc) isoforms of known genes 2549 45.15496 9
Osa12LNT0119000.1 12 Osa12LNG0119000 4461920-4462965 sense lncRNA 752 54.65426 2
Osa12LNT0559300.1 12 Osa12LNG0559300 4592494-4592767 intergenetic lncRNA (lincRNA) 274 24.81752 1
Osa12LNT0559400.1 12 Osa12LNG0559400 4592494-4592767 intergenetic lncRNA (lincRNA) 274 24.81752 1
Osa12LNT0119100.2 12 Osa12LNG0119100 4635104-4638407 long non-coding(lnc) isoforms of known genes 2524 44.33439 3
Osa12LNT0119100.1 12 Osa12LNG0119100 4635104-4638407 long non-coding(lnc) isoforms of known genes 2073 46.84033 3
Osa12LNT0559500.1 12 Osa12LNG0559500 4638882-4639155 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa12LNT0559600.1 12 Osa12LNG0559600 4638882-4639155 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa12LNT0119200.1 12 Osa12LNG0119200 4814597-4818499 long non-coding(lnc) isoforms of known genes 1927 43.27971 6
Osa12LNT0119300.1 12 Osa12LNG0119300 4952852-4957620 sense lncRNA 285 47.7193 2
Osa12LNT0119400.1 12 Osa12LNG0119400 5042596-5044626 long non-coding(lnc) isoforms of known genes 1801 39.92227 3
Osa12LNT0119400.2 12 Osa12LNG0119400 5042596-5044626 long non-coding(lnc) isoforms of known genes 1347 42.09354 6
Osa12LNT0119500.1 12 Osa12LNG0119500 5099050-5102457 long non-coding(lnc) isoforms of known genes 2777 47.20922 4
Osa12LNT0119600.1 12 Osa12LNG0119600 5165422-5168654 intergenetic lncRNA (lincRNA) 2914 39.91078 4
Osa12LNT0112300.1 12 Osa12LNG0112300 535944-540335 long non-coding(lnc) isoforms of known genes 3293 48.70938 4
Osa12LNT0119700.2 12 Osa12LNG0119700 5391987-5394918 long non-coding(lnc) isoforms of known genes 1517 51.08767 9
Osa12LNT0119700.1 12 Osa12LNG0119700 5391987-5394918 long non-coding(lnc) isoforms of known genes 1522 51.05125 9
Osa12LNT0559700.1 12 Osa12LNG0559700 5493332-5493542 intergenetic lncRNA (lincRNA) 211 45.97156 1
Osa12LNT0119800.1 12 Osa12LNG0119800 5644778-5645645 intergenetic lncRNA (lincRNA) 868 38.82488 1
Osa12LNT0119900.1 12 Osa12LNG0119900 5657060-5658186 intergenetic lncRNA (lincRNA) 1127 35.315 1
Osa12LNT0120000.1 12 Osa12LNG0120000 5747608-5749538 intergenetic lncRNA (lincRNA) 1541 40.94744 2
Osa12LNT0559800.1 12 Osa12LNG0559800 5781305-5781549 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa12LNT0559900.1 12 Osa12LNG0559900 5781305-5781549 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa12LNT0120100.1 12 Osa12LNG0120100 5855232-5855620 intergenetic lncRNA (lincRNA) 298 59.0604 2
Osa12LNT0112400.1 12 Osa12LNG0112400 616537-617614 long non-coding(lnc) isoforms of known genes 644 46.58385 3
Osa12LNT0120200.1 12 Osa12LNG0120200 6399037-6399620 intergenetic lncRNA (lincRNA) 584 47.26027 1
Osa12LNT0560000.1 12 Osa12LNG0560000 6514247-6514521 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0560100.1 12 Osa12LNG0560100 6514247-6514521 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0120300.1 12 Osa12LNG0120300 6549518-6550237 intergenetic lncRNA (lincRNA) 720 45.0 1
Osa12LNT0120400.1 12 Osa12LNG0120400 6567109-6567792 intergenetic lncRNA (lincRNA) 684 45.46784 1
Osa12LNT0560200.1 12 Osa12LNG0560200 6578056-6578310 intergenetic lncRNA (lincRNA) 255 28.23529 1
Osa12LNT0120500.1 12 Osa12LNG0120500 6729606-6734439 long non-coding(lnc) isoforms of known genes 2918 50.17135 8
Osa12LNT0560300.1 12 Osa12LNG0560300 6743910-6744123 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa12LNT0120600.1 12 Osa12LNG0120600 6799622-6806553 long non-coding(lnc) isoforms of known genes 1453 47.96972 10
Osa12LNT0120700.1 12 Osa12LNG0120700 6892315-6893811 intronic lncRNA 715 42.51748 6
Osa12LNT0120700.3 12 Osa12LNG0120700 6892315-6893811 intronic lncRNA 737 42.33379 6
Osa12LNT0120700.2 12 Osa12LNG0120700 6892315-6893811 intronic lncRNA 723 42.32365 6
Osa12LNT0120800.1 12 Osa12LNG0120800 6985010-6990105 long non-coding(lnc) isoforms of known genes 4290 46.24709 3
Osa12LNT0120900.1 12 Osa12LNG0120900 7017361-7022664 long non-coding(lnc) isoforms of known genes 2475 47.67677 15
Osa12LNT0121000.1 12 Osa12LNG0121000 7028519-7030635 long non-coding(lnc) isoforms of known genes 1144 54.63287 3
Osa12LNT0560400.1 12 Osa12LNG0560400 7065693-7065993 intergenetic lncRNA (lincRNA) 301 28.57143 1
Osa12LNT0112500.1 12 Osa12LNG0112500 707630-715024 long non-coding(lnc) isoforms of known genes 3094 44.63478 9
Osa12LNT0112500.2 12 Osa12LNG0112500 707630-715024 long non-coding(lnc) isoforms of known genes 3084 44.74708 9
Osa12LNT0560500.1 12 Osa12LNG0560500 7077967-7078174 intergenetic lncRNA (lincRNA) 208 49.51923 1
Osa12LNT0121100.1 12 Osa12LNG0121100 7103232-7106389 long non-coding(lnc) isoforms of known genes 1562 43.79001 2
Osa12LNT0121200.1 12 Osa12LNG0121200 7385218-7386021 intergenetic lncRNA (lincRNA) 804 58.45771 1
Osa12LNT0121300.1 12 Osa12LNG0121300 7409322-7414407 long non-coding(lnc) isoforms of known genes 3261 42.28764 8
Osa12LNT0121400.1 12 Osa12LNG0121400 7421482-7421997 intronic lncRNA 516 24.4186 1
Osa12LNT0121500.1 12 Osa12LNG0121500 7441098-7447628 long non-coding(lnc) isoforms of known genes 3400 46.08824 9
Osa12LNT0121600.1 12 Osa12LNG0121600 7506170-7508955 intergenetic lncRNA (lincRNA) 1868 41.75589 3
Osa12LNT0121700.1 12 Osa12LNG0121700 7509163-7510083 intergenetic lncRNA (lincRNA) 921 49.29425 1
Osa12LNT0121800.1 12 Osa12LNG0121800 7557087-7557385 intergenetic lncRNA (lincRNA) 299 74.24749 1
Osa12LNT0112600.1 12 Osa12LNG0112600 766441-768578 long non-coding(lnc) isoforms of known genes 1554 43.56499 4
Osa12LNT0121900.1 12 Osa12LNG0121900 7688973-7699212 long non-coding(lnc) isoforms of known genes 4395 44.23208 7
Osa12LNT0122100.1 12 Osa12LNG0122100 7731409-7749313 sense lncRNA 4854 46.47713 24
Osa12LNT0122000.1 12 Osa12LNG0122000 7849031-7849545 intergenetic lncRNA (lincRNA) 515 47.57282 1
Osa12LNT0112700.1 12 Osa12LNG0112700 795492-797705 long non-coding(lnc) isoforms of known genes 1681 47.88816 2
Osa12LNT0560600.1 12 Osa12LNG0560600 8131192-8131448 intergenetic lncRNA (lincRNA) 257 27.23735 1
Osa12LNT0112900.1 12 Osa12LNG0112900 817004-823035 long non-coding(lnc) isoforms of known genes 1248 47.11538 5
Osa12LNT0560700.1 12 Osa12LNG0560700 8324297-8324566 intergenetic lncRNA (lincRNA) 270 27.40741 1
Osa12LNT0560800.1 12 Osa12LNG0560800 8324297-8324566 intergenetic lncRNA (lincRNA) 270 27.40741 1