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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0112800.1 12 Osa12LNG0112800 833844-835277 intergenetic lncRNA (lincRNA) 751 39.81358 2
Osa12LNT0561000.1 12 Osa12LNG0561000 8498701-8498948 intergenetic lncRNA (lincRNA) 248 27.01613 1
Osa12LNT0560900.1 12 Osa12LNG0560900 8498701-8498948 intergenetic lncRNA (lincRNA) 248 27.01613 1
Osa12LNT0561200.1 12 Osa12LNG0561200 8499853-8500126 intergenetic lncRNA (lincRNA) 274 22.9927 1
Osa12LNT0561100.1 12 Osa12LNG0561100 8499853-8500126 intergenetic lncRNA (lincRNA) 274 22.9927 1
Osa12LNT0122200.1 12 Osa12LNG0122200 8670057-8679483 long non-coding(lnc) isoforms of known genes 3389 44.43789 7
Osa12LNT0122200.2 12 Osa12LNG0122200 8670057-8679483 long non-coding(lnc) isoforms of known genes 2376 43.01347 6
Osa12LNT0122300.2 12 Osa12LNG0122300 8695284-8699390 long non-coding(lnc) isoforms of known genes 1948 41.63244 4
Osa12LNT0122300.1 12 Osa12LNG0122300 8695284-8699390 long non-coding(lnc) isoforms of known genes 987 50.45593 4
Osa12LNT0122400.1 12 Osa12LNG0122400 8726067-8737949 long non-coding(lnc) isoforms of known genes 2360 42.62712 10
Osa12LNT0122600.3 12 Osa12LNG0122600 8809699-8818252 long non-coding(lnc) isoforms of known genes 1085 56.03687 2
Osa12LNT0122600.2 12 Osa12LNG0122600 8809699-8818252 long non-coding(lnc) isoforms of known genes 1190 54.53782 3
Osa12LNT0122600.1 12 Osa12LNG0122600 8809699-8818252 sense lncRNA 1970 45.7868 2
Osa12LNT0122500.2 12 Osa12LNG0122500 8823330-8826763 sense lncRNA 3001 43.71876 3
Osa12LNT0122500.1 12 Osa12LNG0122500 8823330-8826763 sense lncRNA 3344 42.49402 2
Osa12LNT0113000.3 12 Osa12LNG0113000 917265-927893 long non-coding(lnc) isoforms of known genes 2187 47.23365 6
Osa12LNT0113000.1 12 Osa12LNG0113000 917265-927893 long non-coding(lnc) isoforms of known genes 2508 47.96651 7
Osa12LNT0113000.2 12 Osa12LNG0113000 917265-927893 long non-coding(lnc) isoforms of known genes 2353 46.79133 7
Osa12LNT0122700.1 12 Osa12LNG0122700 9263613-9270109 long non-coding(lnc) isoforms of known genes 2069 47.26921 12
Osa12LNT0122800.1 12 Osa12LNG0122800 9286790-9291493 long non-coding(lnc) isoforms of known genes 1217 49.21939 5
Osa12LNT0122800.2 12 Osa12LNG0122800 9286790-9291493 long non-coding(lnc) isoforms of known genes 959 49.63504 4
Osa12LNT0122900.2 12 Osa12LNG0122900 9303179-9318103 long non-coding(lnc) isoforms of known genes 8700 41.36782 16
Osa12LNT0122900.1 12 Osa12LNG0122900 9303179-9318103 long non-coding(lnc) isoforms of known genes 8284 41.33269 17
Osa12LNT0123000.1 12 Osa12LNG0123000 9371225-9373404 long non-coding(lnc) isoforms of known genes 1032 51.93798 3
Osa12LNT0123100.1 12 Osa12LNG0123100 9466296-9468196 sense lncRNA 652 55.06135 2
Osa12LNT0123100.2 12 Osa12LNG0123100 9466296-9468196 sense lncRNA 635 55.27559 2
Osa12LNT0123200.4 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2814 41.47122 4
Osa12LNT0123200.3 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2337 44.15918 6
Osa12LNT0123200.2 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2162 44.07956 5
Osa12LNT0123200.1 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2828 41.7256 4
Osa12LNT0113100.1 12 Osa12LNG0113100 991532-996318 long non-coding(lnc) isoforms of known genes 1895 49.76253 6
Osa12LNT0123400.1 12 Osa12LNG0123400 9965589-9967931 intergenetic lncRNA (lincRNA) 2241 36.81392 2
Osa12LNT0123500.1 12 Osa12LNG0123500 9968066-9968437 intergenetic lncRNA (lincRNA) 372 67.47312 1
Osa12LNT0123300.1 12 Osa12LNG0123300 9993816-9996544 intergenetic lncRNA (lincRNA) 2633 41.89138 2
Osa12LNT0111700.1 12 Osa12LNG0111700 99964-104024 long non-coding(lnc) isoforms of known genes 2972 48.55316 3
Osa02LNT0141000.1 2 Osa02LNG0141000 1008469-1011856 long non-coding(lnc) isoforms of known genes 1533 50.68493 13
Osa02LNT0156400.1 2 Osa02LNG0156400 10122945-10124303 intergenetic lncRNA (lincRNA) 1359 54.4518 1
Osa02LNT0156500.1 2 Osa02LNG0156500 10125933-10126733 intergenetic lncRNA (lincRNA) 801 58.17728 1
Osa02LNT0156600.1 2 Osa02LNG0156600 10135285-10143931 long non-coding(lnc) isoforms of known genes 1046 46.46272 5
Osa02LNT0475500.1 2 Osa02LNG0475500 10252198-10252444 intergenetic lncRNA (lincRNA) 247 51.01215 1
Osa02LNT0156700.1 2 Osa02LNG0156700 10378457-10380327 long non-coding(lnc) isoforms of known genes 1116 52.95699 8
Osa02LNT0141100.1 2 Osa02LNG0141100 1038123-1039684 sense lncRNA 1481 57.86631 2
Osa02LNT0156800.1 2 Osa02LNG0156800 10437396-10440764 long non-coding(lnc) isoforms of known genes 1450 44.55172 10
Osa02LNT0156900.1 2 Osa02LNG0156900 10534438-10534655 intergenetic lncRNA (lincRNA) 218 43.57798 1
Osa02LNT0157000.1 2 Osa02LNG0157000 10539146-10543155 sense lncRNA 3595 46.56467 2
Osa02LNT0157100.1 2 Osa02LNG0157100 10552654-10558881 long non-coding(lnc) isoforms of known genes 2453 46.02528 13
Osa02LNT0157200.1 2 Osa02LNG0157200 10656004-10656369 intergenetic lncRNA (lincRNA) 366 61.47541 1
Osa02LNT0141200.1 2 Osa02LNG0141200 1068979-1072119 long non-coding(lnc) isoforms of known genes 1237 47.21099 7
Osa02LNT0157300.1 2 Osa02LNG0157300 10791760-10803576 intergenetic lncRNA (lincRNA) 681 40.67548 3
Osa02LNT0157400.1 2 Osa02LNG0157400 10792671-10792894 intergenetic lncRNA (lincRNA) 224 46.42857 1
Osa02LNT0157500.1 2 Osa02LNG0157500 10897250-10902007 sense lncRNA 1435 59.5122 7
Osa02LNT0141300.1 2 Osa02LNG0141300 1090428-1095967 long non-coding(lnc) isoforms of known genes 1932 50.15528 12
Osa02LNT0475600.1 2 Osa02LNG0475600 10904990-10905264 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa02LNT0475700.1 2 Osa02LNG0475700 10904990-10905264 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa02LNT0157600.1 2 Osa02LNG0157600 10972770-10986816 long non-coding(lnc) isoforms of known genes 3098 46.32021 17
Osa02LNT0475800.1 2 Osa02LNG0475800 11021134-11021377 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa02LNT0475900.1 2 Osa02LNG0475900 11021134-11021377 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa02LNT0476000.1 2 Osa02LNG0476000 11021444-11021718 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa02LNT0476100.1 2 Osa02LNG0476100 11021444-11021718 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa02LNT0157800.1 2 Osa02LNG0157800 11056973-11060282 long non-coding(lnc) isoforms of known genes 1773 42.8652 9
Osa02LNT0157700.1 2 Osa02LNG0157700 11066134-11069563 long non-coding(lnc) isoforms of known genes 1846 42.52438 6
Osa02LNT0141400.1 2 Osa02LNG0141400 1123516-1125397 long non-coding(lnc) isoforms of known genes 1599 55.28455 3
Osa02LNT0141500.1 2 Osa02LNG0141500 1126062-1132613 long non-coding(lnc) isoforms of known genes 2444 47.21768 14
Osa02LNT0157900.1 2 Osa02LNG0157900 11335486-11337934 intergenetic lncRNA (lincRNA) 1813 50.24821 3
Osa02LNT0158000.2 2 Osa02LNG0158000 11353388-11357713 long non-coding(lnc) isoforms of known genes 1293 49.88399 6
Osa02LNT0158000.1 2 Osa02LNG0158000 11353388-11357713 long non-coding(lnc) isoforms of known genes 1274 50.86342 7
Osa02LNT0158100.1 2 Osa02LNG0158100 11426993-11431281 long non-coding(lnc) isoforms of known genes 1004 51.79283 3
Osa02LNT0158200.1 2 Osa02LNG0158200 11484496-11488308 long non-coding(lnc) isoforms of known genes 1564 51.47059 10
Osa02LNT0158300.1 2 Osa02LNG0158300 11568279-11569112 sense lncRNA 616 49.18831 2
Osa02LNT0141600.1 2 Osa02LNG0141600 1158885-1161270 long non-coding(lnc) isoforms of known genes 918 49.89107 7
Osa02LNT0141700.1 2 Osa02LNG0141700 1166453-1173452 long non-coding(lnc) isoforms of known genes 1832 49.67249 14
Osa02LNT0141700.3 2 Osa02LNG0141700 1166453-1173452 long non-coding(lnc) isoforms of known genes 2470 45.66802 13
Osa02LNT0141700.2 2 Osa02LNG0141700 1166453-1173452 long non-coding(lnc) isoforms of known genes 2449 45.81462 13
Osa02LNT0158400.1 2 Osa02LNG0158400 11737311-11741850 long non-coding(lnc) isoforms of known genes 2922 49.86311 5
Osa02LNT0158400.2 2 Osa02LNG0158400 11737311-11741850 long non-coding(lnc) isoforms of known genes 2966 45.01011 3
Osa02LNT0158400.3 2 Osa02LNG0158400 11737311-11741850 long non-coding(lnc) isoforms of known genes 2669 45.78494 4
Osa02LNT0158500.1 2 Osa02LNG0158500 11882306-11885861 long non-coding(lnc) isoforms of known genes 2356 41.55348 4
Osa02LNT0158600.2 2 Osa02LNG0158600 11894444-11906139 intergenetic lncRNA (lincRNA) 438 47.03196 2
Osa02LNT0158600.1 2 Osa02LNG0158600 11894444-11906139 intergenetic lncRNA (lincRNA) 823 48.35966 3
Osa02LNT0141800.1 2 Osa02LNG0141800 1193472-1197056 long non-coding(lnc) isoforms of known genes 2303 46.54798 6
Osa02LNT0141900.1 2 Osa02LNG0141900 1198103-1202290 long non-coding(lnc) isoforms of known genes 1746 48.10997 11
Osa02LNT0158700.2 2 Osa02LNG0158700 12008815-12015423 long non-coding(lnc) isoforms of known genes 1921 43.15461 7
Osa02LNT0158700.1 2 Osa02LNG0158700 12008815-12015423 long non-coding(lnc) isoforms of known genes 1351 48.26055 8
Osa02LNT0142000.1 2 Osa02LNG0142000 1224734-1226866 long non-coding(lnc) isoforms of known genes 2048 52.00195 2
Osa02LNT0142100.1 2 Osa02LNG0142100 1231184-1234422 long non-coding(lnc) isoforms of known genes 1425 43.64912 10
Osa02LNT0158800.1 2 Osa02LNG0158800 12340258-12345904 long non-coding(lnc) isoforms of known genes 2704 38.16568 9
Osa02LNT0159000.1 2 Osa02LNG0159000 12398146-12405240 long non-coding(lnc) isoforms of known genes 2610 47.93103 13
Osa02LNT0158900.1 2 Osa02LNG0158900 12409437-12410646 intergenetic lncRNA (lincRNA) 1210 54.46281 1
Osa02LNT0159200.4 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 2615 53.53728 15
Osa02LNT0159200.3 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 4075 47.60736 14
Osa02LNT0159200.2 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 4309 46.92504 12
Osa02LNT0159200.1 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 4041 47.68622 14
Osa02LNT0159100.1 2 Osa02LNG0159100 12450786-12454429 intergenetic lncRNA (lincRNA) 2732 39.7511 5
Osa02LNT0476200.1 2 Osa02LNG0476200 12642727-12642984 intergenetic lncRNA (lincRNA) 258 43.02326 1
Osa02LNT0159300.1 2 Osa02LNG0159300 12663575-12669932 long non-coding(lnc) isoforms of known genes 4052 40.89339 17
Osa02LNT0159300.2 2 Osa02LNG0159300 12663575-12669932 long non-coding(lnc) isoforms of known genes 3600 40.69444 15
Osa02LNT0159400.1 2 Osa02LNG0159400 12731587-12736174 sense lncRNA 2668 53.29835 6
Osa02LNT0159500.1 2 Osa02LNG0159500 12757899-12762205 long non-coding(lnc) isoforms of known genes 2362 45.80864 8
Osa02LNT0159500.2 2 Osa02LNG0159500 12757899-12762205 long non-coding(lnc) isoforms of known genes 2289 45.91525 9
Osa02LNT0159600.1 2 Osa02LNG0159600 12809576-12817254 long non-coding(lnc) isoforms of known genes 2664 47.44745 5