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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0142200.1 2 Osa02LNG0142200 1288998-1292271 sense lncRNA 1617 51.94805 6
Osa02LNT0142300.1 2 Osa02LNG0142300 1289509-1289871 Antisense lncRNA 363 50.13774 1
Osa02LNT0159700.1 2 Osa02LNG0159700 12903031-12905529 intergenetic lncRNA (lincRNA) 1367 45.6474 2
Osa02LNT0159700.2 2 Osa02LNG0159700 12903031-12905529 intergenetic lncRNA (lincRNA) 1274 45.44741 3
Osa02LNT0159800.1 2 Osa02LNG0159800 13002652-13005194 long non-coding(lnc) isoforms of known genes 1053 54.13105 5
Osa02LNT0159900.1 2 Osa02LNG0159900 13036012-13036928 intergenetic lncRNA (lincRNA) 917 41.11232 1
Osa02LNT0160000.1 2 Osa02LNG0160000 13137869-13141201 long non-coding(lnc) isoforms of known genes 1799 44.13563 4
Osa02LNT0160100.1 2 Osa02LNG0160100 13179053-13184655 long non-coding(lnc) isoforms of known genes 2014 51.63853 5
Osa02LNT0476300.1 2 Osa02LNG0476300 13316442-13316645 intergenetic lncRNA (lincRNA) 204 26.96078 1
Osa02LNT0160200.1 2 Osa02LNG0160200 13361034-13364227 long non-coding(lnc) isoforms of known genes 2374 46.29318 6
Osa02LNT0160300.1 2 Osa02LNG0160300 13459486-13460007 intergenetic lncRNA (lincRNA) 397 38.53904 3
Osa02LNT0160400.1 2 Osa02LNG0160400 13560894-13565931 long non-coding(lnc) isoforms of known genes 1829 52.97977 3
Osa02LNT0142400.1 2 Osa02LNG0142400 1360251-1363739 intergenetic lncRNA (lincRNA) 829 44.75271 3
Osa02LNT0142500.1 2 Osa02LNG0142500 1363113-1363317 intergenetic lncRNA (lincRNA) 205 25.85366 1
Osa02LNT0142600.1 2 Osa02LNG0142600 1369761-1373693 intergenetic lncRNA (lincRNA) 750 47.86667 5
Osa02LNT0160500.1 2 Osa02LNG0160500 13772054-13773468 sense lncRNA 1297 55.74402 2
Osa02LNT0160600.1 2 Osa02LNG0160600 13855869-13859316 long non-coding(lnc) isoforms of known genes 909 51.48515 3
Osa02LNT0160700.1 2 Osa02LNG0160700 13863865-13866022 long non-coding(lnc) isoforms of known genes 1664 41.10577 4
Osa02LNT0160800.2 2 Osa02LNG0160800 13878356-13880470 intergenetic lncRNA (lincRNA) 1917 47.20918 3
Osa02LNT0160800.1 2 Osa02LNG0160800 13878356-13880470 intergenetic lncRNA (lincRNA) 1924 47.19335 3
Osa02LNT0160900.1 2 Osa02LNG0160900 13891760-13893097 intergenetic lncRNA (lincRNA) 1338 35.35127 1
Osa02LNT0161000.2 2 Osa02LNG0161000 13949434-13951812 sense lncRNA 1571 53.27817 6
Osa02LNT0161000.1 2 Osa02LNG0161000 13949434-13951812 sense lncRNA 1422 53.65682 6
Osa02LNT0161100.1 2 Osa02LNG0161100 13978689-13987358 long non-coding(lnc) isoforms of known genes 1557 48.94027 10
Osa02LNT0142700.1 2 Osa02LNG0142700 1405094-1409188 intergenetic lncRNA (lincRNA) 1475 51.05085 6
Osa02LNT0142800.2 2 Osa02LNG0142800 1420005-1424390 sense lncRNA 678 56.78466 2
Osa02LNT0142800.1 2 Osa02LNG0142800 1420005-1424390 sense lncRNA 698 55.15759 2
Osa02LNT0161200.1 2 Osa02LNG0161200 14261880-14265253 intergenetic lncRNA (lincRNA) 3374 37.16657 1
Osa02LNT0161400.1 2 Osa02LNG0161400 14356945-14361112 long non-coding(lnc) isoforms of known genes 3272 42.38998 7
Osa02LNT0161300.1 2 Osa02LNG0161300 14391906-14394959 long non-coding(lnc) isoforms of known genes 1143 56.95538 5
Osa02LNT0161500.1 2 Osa02LNG0161500 14532810-14533287 long non-coding(lnc) isoforms of known genes 335 40.29851 2
Osa02LNT0142900.1 2 Osa02LNG0142900 1461552-1468248 long non-coding(lnc) isoforms of known genes 2840 49.01408 12
Osa02LNT0143000.1 2 Osa02LNG0143000 1481272-1482452 long non-coding(lnc) isoforms of known genes 843 51.12693 3
Osa02LNT0161800.1 2 Osa02LNG0161800 14942625-14962036 long non-coding(lnc) isoforms of known genes 2553 44.73169 21
Osa02LNT0161600.1 2 Osa02LNG0161600 14966473-14967697 intergenetic lncRNA (lincRNA) 965 44.66321 2
Osa02LNT0161700.1 2 Osa02LNG0161700 14970175-14973267 intergenetic lncRNA (lincRNA) 1912 40.79498 5
Osa02LNT0162000.2 2 Osa02LNG0162000 14979099-14982717 long non-coding(lnc) isoforms of known genes 3206 41.82782 3
Osa02LNT0162000.1 2 Osa02LNG0162000 14979099-14982717 long non-coding(lnc) isoforms of known genes 3300 41.66667 2
Osa02LNT0161900.1 2 Osa02LNG0161900 14991803-14993674 long non-coding(lnc) isoforms of known genes 1540 49.87013 4
Osa02LNT0162100.1 2 Osa02LNG0162100 15000028-15003048 sense lncRNA 2590 46.37066 5
Osa02LNT0476400.1 2 Osa02LNG0476400 15127728-15127941 intergenetic lncRNA (lincRNA) 214 37.85047 1
Osa02LNT0162200.1 2 Osa02LNG0162200 15138891-15143539 sense lncRNA 2478 56.41646 2
Osa02LNT0162300.1 2 Osa02LNG0162300 15211332-15211584 intergenetic lncRNA (lincRNA) 253 37.54941 1
Osa02LNT0143100.3 2 Osa02LNG0143100 1532451-1535776 long non-coding(lnc) isoforms of known genes 1263 43.46793 9
Osa02LNT0143100.2 2 Osa02LNG0143100 1532451-1535776 long non-coding(lnc) isoforms of known genes 1254 43.54067 9
Osa02LNT0143100.1 2 Osa02LNG0143100 1532451-1535776 long non-coding(lnc) isoforms of known genes 1345 42.75093 8
Osa02LNT0476600.1 2 Osa02LNG0476600 15373466-15373710 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa02LNT0476500.1 2 Osa02LNG0476500 15373466-15373710 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa02LNT0476800.1 2 Osa02LNG0476800 15379197-15379468 intergenetic lncRNA (lincRNA) 272 31.25 1
Osa02LNT0476700.1 2 Osa02LNG0476700 15379197-15379468 intergenetic lncRNA (lincRNA) 272 31.25 1
Osa02LNT0162400.2 2 Osa02LNG0162400 15441717-15446187 long non-coding(lnc) isoforms of known genes 3855 38.46952 4
Osa02LNT0162400.1 2 Osa02LNG0162400 15441717-15446187 long non-coding(lnc) isoforms of known genes 3874 37.45483 3
Osa02LNT0476900.1 2 Osa02LNG0476900 15624514-15624788 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa02LNT0477000.1 2 Osa02LNG0477000 15624514-15624788 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa02LNT0143200.1 2 Osa02LNG0143200 1566154-1569594 long non-coding(lnc) isoforms of known genes 1046 47.51434 7
Osa02LNT0143200.2 2 Osa02LNG0143200 1566154-1569594 long non-coding(lnc) isoforms of known genes 2292 43.4555 6
Osa02LNT0162500.1 2 Osa02LNG0162500 15705569-15709140 long non-coding(lnc) isoforms of known genes 1435 51.84669 4
Osa02LNT0162600.1 2 Osa02LNG0162600 15725827-15726670 long non-coding(lnc) isoforms of known genes 765 58.30065 2
Osa02LNT0162900.1 2 Osa02LNG0162900 15931330-15943020 long non-coding(lnc) isoforms of known genes 6828 41.95958 27
Osa02LNT0163000.1 2 Osa02LNG0163000 15942378-15942761 intergenetic lncRNA (lincRNA) 384 42.1875 1
Osa02LNT0163100.1 2 Osa02LNG0163100 15943081-15974239 long non-coding(lnc) isoforms of known genes 6184 42.17335 38
Osa02LNT0163200.1 2 Osa02LNG0163200 15943674-15943950 intergenetic lncRNA (lincRNA) 277 38.98917 1
Osa02LNT0162700.1 2 Osa02LNG0162700 15986784-15988954 intergenetic lncRNA (lincRNA) 2171 45.78535 1
Osa02LNT0162800.1 2 Osa02LNG0162800 16009711-16014535 long non-coding(lnc) isoforms of known genes 2320 54.05172 6
Osa02LNT0477100.1 2 Osa02LNG0477100 16042086-16042341 intergenetic lncRNA (lincRNA) 256 28.51562 1
Osa02LNT0163300.2 2 Osa02LNG0163300 16104693-16110776 long non-coding(lnc) isoforms of known genes 2453 49.69425 8
Osa02LNT0163300.1 2 Osa02LNG0163300 16104693-16110776 long non-coding(lnc) isoforms of known genes 3177 44.60183 8
Osa02LNT0143300.1 2 Osa02LNG0143300 1610886-1611739 sense lncRNA 729 51.02881 2
Osa02LNT0143700.1 2 Osa02LNG0143700 1617229-1619001 Antisense lncRNA 238 45.79832 2
Osa02LNT0477200.1 2 Osa02LNG0477200 16186690-16186963 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa02LNT0477300.1 2 Osa02LNG0477300 16186690-16186963 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa02LNT0477400.1 2 Osa02LNG0477400 16187030-16187275 intergenetic lncRNA (lincRNA) 246 25.60976 1
Osa02LNT0143400.2 2 Osa02LNG0143400 1632049-1636515 long non-coding(lnc) isoforms of known genes 1957 48.33929 10
Osa02LNT0143400.1 2 Osa02LNG0143400 1632049-1636515 long non-coding(lnc) isoforms of known genes 1949 48.43509 10
Osa02LNT0163400.1 2 Osa02LNG0163400 16347717-16350263 long non-coding(lnc) isoforms of known genes 1233 49.22952 5
Osa02LNT0477500.1 2 Osa02LNG0477500 16350768-16351060 intergenetic lncRNA (lincRNA) 293 25.93857 1
Osa02LNT0477600.1 2 Osa02LNG0477600 16350768-16351060 intergenetic lncRNA (lincRNA) 293 25.93857 1
Osa02LNT0163500.1 2 Osa02LNG0163500 16360196-16365719 long non-coding(lnc) isoforms of known genes 2959 41.5681 11
Osa02LNT0163500.2 2 Osa02LNG0163500 16360196-16365719 long non-coding(lnc) isoforms of known genes 2687 41.79382 12
Osa02LNT0163600.2 2 Osa02LNG0163600 16397777-16401620 sense lncRNA 3307 41.94134 3
Osa02LNT0163600.1 2 Osa02LNG0163600 16397777-16401620 sense lncRNA 1644 50.24331 3
Osa02LNT0163700.1 2 Osa02LNG0163700 16464965-16468482 sense lncRNA 1694 48.7013 2
Osa02LNT0163800.1 2 Osa02LNG0163800 16493375-16502221 long non-coding(lnc) isoforms of known genes 2336 52.05479 12
Osa02LNT0477800.1 2 Osa02LNG0477800 16512375-16512623 intergenetic lncRNA (lincRNA) 249 27.71084 1
Osa02LNT0477700.1 2 Osa02LNG0477700 16512375-16512623 intergenetic lncRNA (lincRNA) 249 27.71084 1
Osa02LNT0143500.1 2 Osa02LNG0143500 1652110-1655309 long non-coding(lnc) isoforms of known genes 1785 52.15686 9
Osa02LNT0143500.2 2 Osa02LNG0143500 1652110-1655309 long non-coding(lnc) isoforms of known genes 1969 54.54545 9
Osa02LNT0477900.1 2 Osa02LNG0477900 16599465-16599708 intergenetic lncRNA (lincRNA) 244 27.45902 1
Osa02LNT0163900.1 2 Osa02LNG0163900 16602669-16612245 long non-coding(lnc) isoforms of known genes 3240 44.04321 14
Osa02LNT0163900.2 2 Osa02LNG0163900 16602669-16612245 long non-coding(lnc) isoforms of known genes 3368 41.27078 13
Osa02LNT0143600.1 2 Osa02LNG0143600 1667427-1671823 long non-coding(lnc) isoforms of known genes 2869 44.09202 7
Osa02LNT0478000.1 2 Osa02LNG0478000 16696732-16696956 intergenetic lncRNA (lincRNA) 225 25.33333 1
Osa02LNT0478200.1 2 Osa02LNG0478200 16803683-16803957 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa02LNT0478100.1 2 Osa02LNG0478100 16803683-16803957 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa02LNT0478300.1 2 Osa02LNG0478300 16956408-16956663 intergenetic lncRNA (lincRNA) 256 23.82812 1
Osa02LNT0478400.1 2 Osa02LNG0478400 16956408-16956663 intergenetic lncRNA (lincRNA) 256 23.82812 1
Osa02LNT0164000.1 2 Osa02LNG0164000 17046466-17047786 long non-coding(lnc) isoforms of known genes 1107 42.36676 3
Osa02LNT0164000.3 2 Osa02LNG0164000 17046466-17047786 long non-coding(lnc) isoforms of known genes 564 44.32624 3
Osa02LNT0164000.2 2 Osa02LNG0164000 17046466-17047786 long non-coding(lnc) isoforms of known genes 1196 39.38127 3
Osa02LNT0164100.1 2 Osa02LNG0164100 17046808-17058399 long non-coding(lnc) isoforms of known genes 2866 44.62666 28