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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa10LNT0571400.1 10 Osa10LNG0571400 7546725-7547000 intergenetic lncRNA (lincRNA) 276 27.17391 1
Osa10LNT0571700.1 10 Osa10LNG0571700 7669211-7669484 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa10LNT0571600.1 10 Osa10LNG0571600 7669211-7669484 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa10LNT0059000.1 10 Osa10LNG0059000 771731-776338 long non-coding(lnc) isoforms of known genes 2070 54.2029 6
Osa10LNT0065200.1 10 Osa10LNG0065200 7813356-7817118 long non-coding(lnc) isoforms of known genes 2044 42.95499 6
Osa10LNT0571800.1 10 Osa10LNG0571800 7818941-7819149 intergenetic lncRNA (lincRNA) 209 36.84211 1
Osa10LNT0065300.1 10 Osa10LNG0065300 7948837-7959665 long non-coding(lnc) isoforms of known genes 1077 47.53946 4
Osa10LNT0569000.1 10 Osa10LNG0569000 797657-797868 intronic lncRNA 212 24.5283 1
Osa10LNT0065400.2 10 Osa10LNG0065400 7993384-7995887 long non-coding(lnc) isoforms of known genes 1667 57.64847 2
Osa10LNT0065400.1 10 Osa10LNG0065400 7993384-7995887 long non-coding(lnc) isoforms of known genes 1789 56.28843 3
Osa10LNT0571900.1 10 Osa10LNG0571900 8038896-8039170 intergenetic lncRNA (lincRNA) 275 23.27273 1
Osa10LNT0572000.1 10 Osa10LNG0572000 8038896-8039170 intergenetic lncRNA (lincRNA) 275 23.27273 1
Osa10LNT0065500.2 10 Osa10LNG0065500 8071783-8074802 long non-coding(lnc) isoforms of known genes 889 43.86952 7
Osa10LNT0065500.1 10 Osa10LNG0065500 8071783-8074802 long non-coding(lnc) isoforms of known genes 872 43.92202 7
Osa10LNT0065600.1 10 Osa10LNG0065600 8092866-8099474 long non-coding(lnc) isoforms of known genes 1491 53.05164 4
Osa10LNT0065700.1 10 Osa10LNG0065700 8203151-8203826 intergenetic lncRNA (lincRNA) 676 50.73964 1
Osa10LNT0065800.1 10 Osa10LNG0065800 8786980-8796560 long non-coding(lnc) isoforms of known genes 1477 49.2891 5
Osa10LNT0572100.1 10 Osa10LNG0572100 8838409-8838652 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa10LNT0572300.1 10 Osa10LNG0572300 8838719-8838993 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa10LNT0572200.1 10 Osa10LNG0572200 8838719-8838993 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa10LNT0572400.1 10 Osa10LNG0572400 8839817-8840072 intergenetic lncRNA (lincRNA) 256 26.5625 1
Osa10LNT0572500.1 10 Osa10LNG0572500 8839817-8840072 intergenetic lncRNA (lincRNA) 256 26.5625 1
Osa10LNT0065900.1 10 Osa10LNG0065900 8941648-8944243 intergenetic lncRNA (lincRNA) 2392 42.26589 3
Osa10LNT0572600.1 10 Osa10LNG0572600 9308612-9308855 intergenetic lncRNA (lincRNA) 244 53.68852 1
Osa10LNT0066000.1 10 Osa10LNG0066000 9963826-9964548 intergenetic lncRNA (lincRNA) 413 45.76271 2
Osa11LNT0094700.1 11 Osa11LNG0094700 10230375-10232886 long non-coding(lnc) isoforms of known genes 843 47.44958 6
Osa11LNT0083900.1 11 Osa11LNG0083900 1028032-1030679 sense lncRNA 2476 43.49758 2
Osa11LNT0094900.4 11 Osa11LNG0094900 10352345-10376608 long non-coding(lnc) isoforms of known genes 1902 43.796 14
Osa11LNT0094900.2 11 Osa11LNG0094900 10352345-10376608 long non-coding(lnc) isoforms of known genes 1842 43.10532 14
Osa11LNT0094900.3 11 Osa11LNG0094900 10352345-10376608 long non-coding(lnc) isoforms of known genes 1751 43.46088 13
Osa11LNT0094900.1 11 Osa11LNG0094900 10352345-10376608 long non-coding(lnc) isoforms of known genes 2455 42.85132 18
Osa11LNT0535700.1 11 Osa11LNG0535700 10377466-10377722 intergenetic lncRNA (lincRNA) 257 25.29183 1
Osa11LNT0535600.1 11 Osa11LNG0535600 10377466-10377722 intergenetic lncRNA (lincRNA) 257 25.29183 1
Osa11LNT0082100.1 11 Osa11LNG0082100 104144-108225 sense lncRNA 2993 48.44637 3
Osa11LNT0535800.1 11 Osa11LNG0535800 10529581-10529824 intergenetic lncRNA (lincRNA) 244 27.45902 1
Osa11LNT0535900.1 11 Osa11LNG0535900 10541037-10541310 intergenetic lncRNA (lincRNA) 274 25.91241 1
Osa11LNT0536000.1 11 Osa11LNG0536000 10541037-10541310 intergenetic lncRNA (lincRNA) 274 25.91241 1
Osa11LNT0094800.1 11 Osa11LNG0094800 10612644-10615884 sense lncRNA 530 70.18868 2
Osa11LNT0095000.4 11 Osa11LNG0095000 10647787-10656218 long non-coding(lnc) isoforms of known genes 4294 41.68607 15
Osa11LNT0095000.3 11 Osa11LNG0095000 10647787-10656218 long non-coding(lnc) isoforms of known genes 4204 41.69838 16
Osa11LNT0095000.2 11 Osa11LNG0095000 10647787-10656218 long non-coding(lnc) isoforms of known genes 4056 41.8146 16
Osa11LNT0095000.1 11 Osa11LNG0095000 10647787-10656218 long non-coding(lnc) isoforms of known genes 4062 41.82669 16
Osa11LNT0084100.1 11 Osa11LNG0084100 1070728-1076748 long non-coding(lnc) isoforms of known genes 2409 47.77916 9
Osa11LNT0095100.1 11 Osa11LNG0095100 10772535-10773197 intronic lncRNA 663 31.52338 1
Osa11LNT0084000.1 11 Osa11LNG0084000 1078104-1082412 long non-coding(lnc) isoforms of known genes 998 46.39279 8
Osa11LNT0084200.1 11 Osa11LNG0084200 1136069-1141638 long non-coding(lnc) isoforms of known genes 3119 42.41744 8
Osa11LNT0095200.1 11 Osa11LNG0095200 11361814-11368591 long non-coding(lnc) isoforms of known genes 2237 43.00402 8
Osa11LNT0095200.2 11 Osa11LNG0095200 11361814-11368591 long non-coding(lnc) isoforms of known genes 2170 42.39631 7
Osa11LNT0536100.1 11 Osa11LNG0536100 11393051-11393325 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa11LNT0095300.1 11 Osa11LNG0095300 11401362-11401609 Antisense lncRNA 248 27.01613 1