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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa11LNT0095400.1 11 Osa11LNG0095400 11401367-11401616 Antisense lncRNA 250 27.6 1
Osa11LNT0095500.2 11 Osa11LNG0095500 11407302-11411295 long non-coding(lnc) isoforms of known genes 2387 53.41433 8
Osa11LNT0095500.1 11 Osa11LNG0095500 11407302-11411295 long non-coding(lnc) isoforms of known genes 2794 51.00215 6
Osa11LNT0536200.1 11 Osa11LNG0536200 11420869-11421076 intergenetic lncRNA (lincRNA) 208 43.75 1
Osa11LNT0095600.1 11 Osa11LNG0095600 11703417-11703754 intronic lncRNA 338 36.98225 1
Osa11LNT0095700.1 11 Osa11LNG0095700 11712800-11716306 long non-coding(lnc) isoforms of known genes 2442 45.3317 5
Osa11LNT0095700.2 11 Osa11LNG0095700 11712800-11716306 long non-coding(lnc) isoforms of known genes 1572 49.93639 6
Osa11LNT0082200.1 11 Osa11LNG0082200 117292-124378 long non-coding(lnc) isoforms of known genes 3271 46.2244 15
Osa11LNT0095800.1 11 Osa11LNG0095800 11736082-11739401 long non-coding(lnc) isoforms of known genes 1782 51.06622 7
Osa11LNT0095900.2 11 Osa11LNG0095900 11744815-11760956 long non-coding(lnc) isoforms of known genes 1114 51.3465 5
Osa11LNT0095900.1 11 Osa11LNG0095900 11744815-11760956 long non-coding(lnc) isoforms of known genes 933 51.66131 4
Osa11LNT0084300.1 11 Osa11LNG0084300 1180283-1182666 intergenetic lncRNA (lincRNA) 325 57.53846 2
Osa11LNT0082000.1 11 Osa11LNG0082000 1180-4230 long non-coding(lnc) isoforms of known genes 666 45.64565 5
Osa11LNT0084400.1 11 Osa11LNG0084400 1183841-1184342 intergenetic lncRNA (lincRNA) 502 46.21514 1
Osa11LNT0096000.1 11 Osa11LNG0096000 11871375-11879058 long non-coding(lnc) isoforms of known genes 2965 45.86847 8
Osa11LNT0096000.2 11 Osa11LNG0096000 11871375-11879058 long non-coding(lnc) isoforms of known genes 2993 45.77347 7
Osa11LNT0536400.1 11 Osa11LNG0536400 11933030-11933303 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0536300.1 11 Osa11LNG0536300 11933030-11933303 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0536500.1 11 Osa11LNG0536500 11958925-11959201 intergenetic lncRNA (lincRNA) 277 26.35379 1
Osa11LNT0536600.1 11 Osa11LNG0536600 11958925-11959201 intergenetic lncRNA (lincRNA) 277 26.35379 1
Osa11LNT0096100.2 11 Osa11LNG0096100 12010689-12013524 intergenetic lncRNA (lincRNA) 2073 44.62132 3
Osa11LNT0096100.1 11 Osa11LNG0096100 12010689-12013524 intergenetic lncRNA (lincRNA) 2192 44.11496 2
Osa11LNT0096200.1 11 Osa11LNG0096200 12143152-12148328 intergenetic lncRNA (lincRNA) 1477 38.99797 6
Osa11LNT0096300.1 11 Osa11LNG0096300 12510081-12511257 long non-coding(lnc) isoforms of known genes 830 40.84337 2
Osa11LNT0536800.1 11 Osa11LNG0536800 12778441-12778696 intergenetic lncRNA (lincRNA) 256 26.95312 1
Osa11LNT0536700.1 11 Osa11LNG0536700 12778441-12778696 intergenetic lncRNA (lincRNA) 256 26.95312 1
Osa11LNT0536900.1 11 Osa11LNG0536900 12779522-12779781 intergenetic lncRNA (lincRNA) 260 27.69231 1
Osa11LNT0537000.1 11 Osa11LNG0537000 12779522-12779781 intergenetic lncRNA (lincRNA) 260 27.69231 1
Osa11LNT0096400.1 11 Osa11LNG0096400 12811965-12818201 long non-coding(lnc) isoforms of known genes 3716 53.95587 13
Osa11LNT0096500.1 11 Osa11LNG0096500 12849253-12853420 long non-coding(lnc) isoforms of known genes 1338 52.24215 6
Osa11LNT0096600.1 11 Osa11LNG0096600 13207199-13208488 sense lncRNA 862 52.66821 2
Osa11LNT0096700.1 11 Osa11LNG0096700 13227947-13228180 intergenetic lncRNA (lincRNA) 234 67.94872 1
Osa11LNT0537100.1 11 Osa11LNG0537100 13235594-13235867 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0537200.1 11 Osa11LNG0537200 13235594-13235867 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa11LNT0084500.1 11 Osa11LNG0084500 1325588-1328957 long non-coding(lnc) isoforms of known genes 2332 45.06861 5
Osa11LNT0084600.1 11 Osa11LNG0084600 1329442-1333406 long non-coding(lnc) isoforms of known genes 1420 49.57746 13
Osa11LNT0096800.1 11 Osa11LNG0096800 13377937-13379488 long non-coding(lnc) isoforms of known genes 1336 59.20659 3
Osa11LNT0537300.1 11 Osa11LNG0537300 13449185-13449436 intergenetic lncRNA (lincRNA) 252 26.5873 1
Osa11LNT0537400.1 11 Osa11LNG0537400 13449185-13449436 intergenetic lncRNA (lincRNA) 252 26.5873 1
Osa11LNT0537500.1 11 Osa11LNG0537500 13449503-13449747 intergenetic lncRNA (lincRNA) 245 27.7551 1
Osa11LNT0537600.1 11 Osa11LNG0537600 13519501-13519777 intergenetic lncRNA (lincRNA) 277 24.54874 1
Osa11LNT0537700.1 11 Osa11LNG0537700 13519501-13519777 intergenetic lncRNA (lincRNA) 277 24.54874 1
Osa11LNT0537800.1 11 Osa11LNG0537800 13520614-13520887 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa11LNT0537900.1 11 Osa11LNG0537900 13520614-13520887 intergenetic lncRNA (lincRNA) 274 24.45255 1
Osa11LNT0538000.1 11 Osa11LNG0538000 13556785-13557028 intergenetic lncRNA (lincRNA) 244 26.63934 1
Osa11LNT0538100.1 11 Osa11LNG0538100 13557095-13557369 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa11LNT0538200.1 11 Osa11LNG0538200 13557095-13557369 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa11LNT0096900.1 11 Osa11LNG0096900 13631418-13632066 Antisense lncRNA 458 51.31004 2
Osa11LNT0097000.1 11 Osa11LNG0097000 13674238-13675130 intergenetic lncRNA (lincRNA) 802 40.64838 2
Osa11LNT0538400.1 11 Osa11LNG0538400 13698312-13698589 intergenetic lncRNA (lincRNA) 278 30.21583 1