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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0146000.1 2 Osa02LNG0146000 2643056-2646360 long non-coding(lnc) isoforms of known genes 1546 46.24838 3
Osa02LNT0176400.1 2 Osa02LNG0176400 26476674-26481112 long non-coding(lnc) isoforms of known genes 1445 45.95156 10
Osa02LNT0176400.2 2 Osa02LNG0176400 26476674-26481112 long non-coding(lnc) isoforms of known genes 1446 45.91978 10
Osa02LNT0176500.1 2 Osa02LNG0176500 26504378-26510073 long non-coding(lnc) isoforms of known genes 2139 44.97429 14
Osa02LNT0176600.1 2 Osa02LNG0176600 26564631-26571664 long non-coding(lnc) isoforms of known genes 733 52.25102 3
Osa02LNT0176700.1 2 Osa02LNG0176700 26573548-26576645 long non-coding(lnc) isoforms of known genes 1440 53.33333 4
Osa02LNT0176800.1 2 Osa02LNG0176800 26620327-26622212 long non-coding(lnc) isoforms of known genes 610 56.06557 3
Osa02LNT0176900.2 2 Osa02LNG0176900 26625056-26632116 long non-coding(lnc) isoforms of known genes 3853 56.13807 9
Osa02LNT0176900.1 2 Osa02LNG0176900 26625056-26632116 long non-coding(lnc) isoforms of known genes 3934 55.97356 8
Osa02LNT0177000.1 2 Osa02LNG0177000 26774221-26780263 sense lncRNA 1379 60.26106 3
Osa02LNT0177100.1 2 Osa02LNG0177100 26801168-26801369 intronic lncRNA 202 30.69307 1
Osa02LNT0146100.1 2 Osa02LNG0146100 2680615-2680816 intergenetic lncRNA (lincRNA) 202 32.67327 1
Osa02LNT0177200.1 2 Osa02LNG0177200 26978745-26979137 intergenetic lncRNA (lincRNA) 393 60.30534 1
Osa02LNT0177300.1 2 Osa02LNG0177300 26982288-26986839 long non-coding(lnc) isoforms of known genes 2021 44.92825 4
Osa02LNT0177300.3 2 Osa02LNG0177300 26982288-26986839 long non-coding(lnc) isoforms of known genes 1339 54.66766 5
Osa02LNT0177300.2 2 Osa02LNG0177300 26982288-26986839 long non-coding(lnc) isoforms of known genes 2212 44.84629 4
Osa02LNT0177400.1 2 Osa02LNG0177400 27025705-27026166 Antisense lncRNA 296 43.91892 3
Osa02LNT0177500.1 2 Osa02LNG0177500 27048920-27061955 long non-coding(lnc) isoforms of known genes 4848 43.11056 11
Osa02LNT0177600.1 2 Osa02LNG0177600 27084392-27087479 long non-coding(lnc) isoforms of known genes 1169 49.44397 3
Osa02LNT0177700.1 2 Osa02LNG0177700 27112899-27113777 intergenetic lncRNA (lincRNA) 879 44.59613 1
Osa02LNT0473100.1 2 Osa02LNG0473100 2717770-2718035 intergenetic lncRNA (lincRNA) 266 27.44361 1
Osa02LNT0473000.1 2 Osa02LNG0473000 2717770-2718035 intergenetic lncRNA (lincRNA) 266 27.44361 1
Osa02LNT0177800.1 2 Osa02LNG0177800 27188149-27191911 long non-coding(lnc) isoforms of known genes 997 48.14443 4
Osa02LNT0177900.1 2 Osa02LNG0177900 27236460-27241155 long non-coding(lnc) isoforms of known genes 3524 40.52213 7
Osa02LNT0178000.1 2 Osa02LNG0178000 27241256-27242032 intergenetic lncRNA (lincRNA) 777 52.12355 1
Osa02LNT0178300.1 2 Osa02LNG0178300 27273381-27279473 long non-coding(lnc) isoforms of known genes 4336 41.25923 5
Osa02LNT0178200.1 2 Osa02LNG0178200 27297098-27300008 sense lncRNA 2738 50.98612 2
Osa02LNT0178200.2 2 Osa02LNG0178200 27297098-27300008 sense lncRNA 2732 50.98829 2
Osa02LNT0178100.1 2 Osa02LNG0178100 27302071-27302874 intergenetic lncRNA (lincRNA) 726 51.79063 2
Osa02LNT0178400.2 2 Osa02LNG0178400 27330318-27338785 long non-coding(lnc) isoforms of known genes 3743 49.85306 23
Osa02LNT0178400.1 2 Osa02LNG0178400 27330318-27338785 long non-coding(lnc) isoforms of known genes 3729 49.77206 23
Osa02LNT0178500.1 2 Osa02LNG0178500 27480264-27484551 long non-coding(lnc) isoforms of known genes 2657 44.82499 4
Osa02LNT0178600.1 2 Osa02LNG0178600 27505068-27505682 intergenetic lncRNA (lincRNA) 506 59.48617 2
Osa02LNT0178700.2 2 Osa02LNG0178700 27667980-27671383 long non-coding(lnc) isoforms of known genes 2025 53.38272 4
Osa02LNT0178700.1 2 Osa02LNG0178700 27667980-27671383 long non-coding(lnc) isoforms of known genes 2380 53.78151 4
Osa02LNT0146200.1 2 Osa02LNG0146200 2768258-2768859 intronic lncRNA 602 33.22259 1
Osa02LNT0146400.1 2 Osa02LNG0146400 2772502-2774515 sense lncRNA 1819 47.93843 2
Osa02LNT0146300.1 2 Osa02LNG0146300 2773266-2774685 long non-coding(lnc) isoforms of known genes 427 64.40281 2
Osa02LNT0178800.1 2 Osa02LNG0178800 27776483-27781443 long non-coding(lnc) isoforms of known genes 2744 44.09621 8
Osa02LNT0178900.1 2 Osa02LNG0178900 28013034-28020865 long non-coding(lnc) isoforms of known genes 1392 50.71839 6
Osa02LNT0179000.1 2 Osa02LNG0179000 28014839-28015874 Antisense lncRNA 604 40.72848 2
Osa02LNT0146500.1 2 Osa02LNG0146500 2804452-2807576 long non-coding(lnc) isoforms of known genes 2056 44.94163 2
Osa02LNT0179100.1 2 Osa02LNG0179100 28108634-28113384 long non-coding(lnc) isoforms of known genes 3468 49.19262 6
Osa02LNT0179200.1 2 Osa02LNG0179200 28136347-28137459 long non-coding(lnc) isoforms of known genes 954 63.41719 3
Osa02LNT0179300.1 2 Osa02LNG0179300 28160301-28162054 long non-coding(lnc) isoforms of known genes 1433 62.66574 4
Osa02LNT0179400.1 2 Osa02LNG0179400 28175466-28180836 sense lncRNA 1744 47.76376 2
Osa02LNT0179500.1 2 Osa02LNG0179500 28293795-28308016 long non-coding(lnc) isoforms of known genes 7363 43.73217 21
Osa02LNT0179500.2 2 Osa02LNG0179500 28293795-28308016 long non-coding(lnc) isoforms of known genes 7266 43.84806 22
Osa02LNT0179600.1 2 Osa02LNG0179600 28339193-28344100 intergenetic lncRNA (lincRNA) 810 41.48148 5
Osa02LNT0179700.2 2 Osa02LNG0179700 28415143-28417062 long non-coding(lnc) isoforms of known genes 927 47.35707 5
Osa02LNT0179700.1 2 Osa02LNG0179700 28415143-28417062 long non-coding(lnc) isoforms of known genes 1053 44.25451 4
Osa02LNT0179800.1 2 Osa02LNG0179800 28429214-28430034 intergenetic lncRNA (lincRNA) 821 61.02314 1
Osa02LNT0179900.1 2 Osa02LNG0179900 28517219-28521387 long non-coding(lnc) isoforms of known genes 1338 49.77578 5
Osa02LNT0180100.1 2 Osa02LNG0180100 28548351-28551798 long non-coding(lnc) isoforms of known genes 1595 44.82759 12
Osa02LNT0180000.1 2 Osa02LNG0180000 28572927-28574543 intergenetic lncRNA (lincRNA) 1617 58.75077 1
Osa02LNT0180200.1 2 Osa02LNG0180200 28625318-28630932 long non-coding(lnc) isoforms of known genes 2908 41.64374 15
Osa02LNT0180300.1 2 Osa02LNG0180300 28795625-28800683 long non-coding(lnc) isoforms of known genes 3664 46.09716 3
Osa02LNT0180400.3 2 Osa02LNG0180400 28898568-28900900 sense lncRNA 634 47.63407 4
Osa02LNT0180400.2 2 Osa02LNG0180400 28898568-28900900 sense lncRNA 631 47.54358 4
Osa02LNT0180400.1 2 Osa02LNG0180400 28898568-28900900 sense lncRNA 651 47.61905 4
Osa02LNT0180500.1 2 Osa02LNG0180500 28967587-28971989 long non-coding(lnc) isoforms of known genes 1617 49.41249 6
Osa02LNT0180500.2 2 Osa02LNG0180500 28967587-28971989 long non-coding(lnc) isoforms of known genes 3273 39.90223 6
Osa02LNT0146600.1 2 Osa02LNG0146600 2898907-2903732 long non-coding(lnc) isoforms of known genes 3835 44.82399 5
Osa02LNT0180600.1 2 Osa02LNG0180600 29059400-29064276 long non-coding(lnc) isoforms of known genes 3127 48.92869 6
Osa02LNT0180700.1 2 Osa02LNG0180700 29072649-29076550 long non-coding(lnc) isoforms of known genes 1776 51.35135 4
Osa02LNT0180800.1 2 Osa02LNG0180800 29088552-29097436 long non-coding(lnc) isoforms of known genes 5757 39.32604 16
Osa02LNT0180900.1 2 Osa02LNG0180900 29287709-29291570 long non-coding(lnc) isoforms of known genes 2894 49.65446 2
Osa02LNT0181000.1 2 Osa02LNG0181000 29373020-29381657 long non-coding(lnc) isoforms of known genes 2670 44.94382 16
Osa02LNT0181100.1 2 Osa02LNG0181100 29382372-29386574 long non-coding(lnc) isoforms of known genes 3391 43.05515 6
Osa02LNT0481200.1 2 Osa02LNG0481200 29425878-29426140 intergenetic lncRNA (lincRNA) 263 34.60076 1
Osa02LNT0181200.1 2 Osa02LNG0181200 29481005-29482742 long non-coding(lnc) isoforms of known genes 1353 61.19734 2
Osa02LNT0181300.1 2 Osa02LNG0181300 29483433-29495702 long non-coding(lnc) isoforms of known genes 3826 46.83743 24
Osa02LNT0181400.1 2 Osa02LNG0181400 29523354-29528321 long non-coding(lnc) isoforms of known genes 2828 40.77086 7
Osa02LNT0181500.1 2 Osa02LNG0181500 29587103-29592124 long non-coding(lnc) isoforms of known genes 2114 58.13623 4
Osa02LNT0181600.1 2 Osa02LNG0181600 29715886-29718849 sense lncRNA 1886 42.47084 2
Osa02LNT0181700.1 2 Osa02LNG0181700 29795451-29797237 sense lncRNA 708 50.42373 2
Osa02LNT0181800.1 2 Osa02LNG0181800 29804863-29805544 intergenetic lncRNA (lincRNA) 682 55.71848 1
Osa02LNT0181900.1 2 Osa02LNG0181900 29950719-29956811 long non-coding(lnc) isoforms of known genes 2748 44.97817 15
Osa02LNT0181900.2 2 Osa02LNG0181900 29950719-29956811 long non-coding(lnc) isoforms of known genes 3433 42.70318 14
Osa02LNT0182000.1 2 Osa02LNG0182000 29958925-29978911 long non-coding(lnc) isoforms of known genes 1507 42.53484 11
Osa02LNT0182100.1 2 Osa02LNG0182100 30044338-30048008 intergenetic lncRNA (lincRNA) 1017 57.52212 4
Osa02LNT0182200.1 2 Osa02LNG0182200 30053467-30058548 long non-coding(lnc) isoforms of known genes 1297 47.72552 10
Osa02LNT0182300.1 2 Osa02LNG0182300 30102002-30102825 intergenetic lncRNA (lincRNA) 824 59.2233 1
Osa02LNT0182400.1 2 Osa02LNG0182400 30155109-30156448 intergenetic lncRNA (lincRNA) 522 50.95785 3
Osa02LNT0182500.1 2 Osa02LNG0182500 30159145-30159503 intergenetic lncRNA (lincRNA) 359 72.9805 1
Osa02LNT0182700.1 2 Osa02LNG0182700 30232893-30235221 long non-coding(lnc) isoforms of known genes 1522 47.70039 9
Osa02LNT0182600.1 2 Osa02LNG0182600 30238297-30238754 intergenetic lncRNA (lincRNA) 458 51.52838 1
Osa02LNT0182800.1 2 Osa02LNG0182800 30259579-30265652 long non-coding(lnc) isoforms of known genes 4048 51.03755 6
Osa02LNT0473200.1 2 Osa02LNG0473200 3026085-3026312 intergenetic lncRNA (lincRNA) 228 29.82456 1
Osa02LNT0481300.1 2 Osa02LNG0481300 30275264-30275538 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa02LNT0182900.1 2 Osa02LNG0182900 30316251-30319805 long non-coding(lnc) isoforms of known genes 2305 48.19957 11
Osa02LNT0183000.1 2 Osa02LNG0183000 30323406-30325666 long non-coding(lnc) isoforms of known genes 795 49.68553 4
Osa02LNT0183100.1 2 Osa02LNG0183100 30361908-30363806 long non-coding(lnc) isoforms of known genes 1435 63.0662 6
Osa02LNT0183200.1 2 Osa02LNG0183200 30398551-30402611 long non-coding(lnc) isoforms of known genes 1638 44.99389 8
Osa02LNT0183300.2 2 Osa02LNG0183300 30459297-30464310 Antisense lncRNA 2001 40.62969 4
Osa02LNT0183300.1 2 Osa02LNG0183300 30459297-30464310 Antisense lncRNA 2283 40.64827 3
Osa02LNT0183300.3 2 Osa02LNG0183300 30459297-30464310 Antisense lncRNA 1939 40.48479 3
Osa02LNT0183400.2 2 Osa02LNG0183400 30542197-30553539 long non-coding(lnc) isoforms of known genes 5423 43.97935 20
Osa02LNT0183400.1 2 Osa02LNG0183400 30542197-30553539 long non-coding(lnc) isoforms of known genes 6582 42.17563 18
Osa02LNT0183600.1 2 Osa02LNG0183600 30674877-30675542 Antisense lncRNA 315 60.63492 3