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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0183500.1 2 Osa02LNG0183500 30701964-30704243 long non-coding(lnc) isoforms of known genes 1319 52.31236 5
Osa02LNT0183700.1 2 Osa02LNG0183700 30823131-30823485 intergenetic lncRNA (lincRNA) 355 61.97183 1
Osa02LNT0183800.1 2 Osa02LNG0183800 30882007-30886489 long non-coding(lnc) isoforms of known genes 3209 60.42381 2
Osa02LNT0146700.1 2 Osa02LNG0146700 3091716-3092793 Antisense lncRNA 373 61.3941 2
Osa02LNT0183900.1 2 Osa02LNG0183900 30958630-30965222 long non-coding(lnc) isoforms of known genes 3354 44.4842 12
Osa02LNT0184000.1 2 Osa02LNG0184000 31038552-31040540 long non-coding(lnc) isoforms of known genes 1063 61.1477 3
Osa02LNT0184100.1 2 Osa02LNG0184100 31096226-31101188 long non-coding(lnc) isoforms of known genes 2137 51.09967 9
Osa02LNT0184200.1 2 Osa02LNG0184200 31120649-31129522 long non-coding(lnc) isoforms of known genes 4269 45.98267 27
Osa02LNT0139800.1 2 Osa02LNG0139800 311537-314826 long non-coding(lnc) isoforms of known genes 1594 43.601 4
Osa02LNT0184300.1 2 Osa02LNG0184300 31227802-31232210 long non-coding(lnc) isoforms of known genes 606 63.69637 2
Osa02LNT0184400.2 2 Osa02LNG0184400 31228398-31231929 long non-coding(lnc) isoforms of known genes 1731 48.35355 9
Osa02LNT0184400.1 2 Osa02LNG0184400 31228398-31231929 long non-coding(lnc) isoforms of known genes 1720 48.25581 9
Osa02LNT0184500.1 2 Osa02LNG0184500 31252649-31256000 long non-coding(lnc) isoforms of known genes 1646 50.54678 10
Osa02LNT0184500.2 2 Osa02LNG0184500 31252649-31256000 long non-coding(lnc) isoforms of known genes 1631 50.64378 10
Osa02LNT0481400.1 2 Osa02LNG0481400 31349761-31349964 intergenetic lncRNA (lincRNA) 204 38.72549 1
Osa02LNT0184600.1 2 Osa02LNG0184600 31409912-31414155 long non-coding(lnc) isoforms of known genes 1912 46.44351 9
Osa02LNT0184700.1 2 Osa02LNG0184700 31432698-31437979 long non-coding(lnc) isoforms of known genes 2537 45.40796 4
Osa02LNT0146900.1 2 Osa02LNG0146900 3144559-3152656 Antisense lncRNA 2051 47.73281 22
Osa02LNT0146900.2 2 Osa02LNG0146900 3144559-3152656 Antisense lncRNA 2069 47.55921 22
Osa02LNT0184800.2 2 Osa02LNG0184800 31501032-31512420 long non-coding(lnc) isoforms of known genes 2849 44.08564 24
Osa02LNT0184800.1 2 Osa02LNG0184800 31501032-31512420 long non-coding(lnc) isoforms of known genes 2683 44.68878 25
Osa02LNT0184900.1 2 Osa02LNG0184900 31535313-31538765 long non-coding(lnc) isoforms of known genes 1063 47.22484 3
Osa02LNT0185000.1 2 Osa02LNG0185000 31547956-31548423 intergenetic lncRNA (lincRNA) 468 45.7265 1
Osa02LNT0185100.1 2 Osa02LNG0185100 31609801-31614138 long non-coding(lnc) isoforms of known genes 3208 56.45262 5
Osa02LNT0146800.1 2 Osa02LNG0146800 3163916-3165233 sense lncRNA 790 51.39241 2
Osa02LNT0185200.1 2 Osa02LNG0185200 31759161-31761563 long non-coding(lnc) isoforms of known genes 1221 51.26945 4
Osa02LNT0481500.1 2 Osa02LNG0481500 31797951-31798225 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa02LNT0481600.1 2 Osa02LNG0481600 31797951-31798225 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa02LNT0185300.1 2 Osa02LNG0185300 31798693-31799330 intergenetic lncRNA (lincRNA) 638 62.53918 1
Osa02LNT0185400.1 2 Osa02LNG0185400 31916205-31920566 long non-coding(lnc) isoforms of known genes 1291 47.40511 7
Osa02LNT0185500.3 2 Osa02LNG0185500 32081293-32085565 long non-coding(lnc) isoforms of known genes 1904 44.53782 10
Osa02LNT0185500.2 2 Osa02LNG0185500 32081293-32085565 long non-coding(lnc) isoforms of known genes 1272 48.34906 10
Osa02LNT0185500.1 2 Osa02LNG0185500 32081293-32085565 long non-coding(lnc) isoforms of known genes 1276 48.4326 10
Osa02LNT0185600.1 2 Osa02LNG0185600 32092748-32094628 sense lncRNA 691 57.01881 2
Osa02LNT0185700.2 2 Osa02LNG0185700 32276662-32281580 long non-coding(lnc) isoforms of known genes 2901 49.53464 3
Osa02LNT0185700.1 2 Osa02LNG0185700 32276662-32281580 long non-coding(lnc) isoforms of known genes 3382 47.25015 3
Osa02LNT0185800.1 2 Osa02LNG0185800 32286725-32291911 long non-coding(lnc) isoforms of known genes 2157 51.04312 8
Osa02LNT0185800.2 2 Osa02LNG0185800 32286725-32291911 long non-coding(lnc) isoforms of known genes 2517 51.56933 8
Osa02LNT0185900.1 2 Osa02LNG0185900 32326231-32330111 long non-coding(lnc) isoforms of known genes 1141 44.87292 12
Osa02LNT0186100.1 2 Osa02LNG0186100 32343123-32348844 intergenetic lncRNA (lincRNA) 745 44.42953 3
Osa02LNT0186000.1 2 Osa02LNG0186000 32353428-32356451 long non-coding(lnc) isoforms of known genes 2526 42.83452 3
Osa02LNT0147000.1 2 Osa02LNG0147000 3237586-3249846 sense lncRNA 4510 46.36364 22
Osa02LNT0186200.1 2 Osa02LNG0186200 32426373-32429273 long non-coding(lnc) isoforms of known genes 1410 59.85816 5
Osa02LNT0186300.1 2 Osa02LNG0186300 32520316-32520962 intergenetic lncRNA (lincRNA) 647 47.29521 1
Osa02LNT0186400.1 2 Osa02LNG0186400 32575339-32580495 long non-coding(lnc) isoforms of known genes 2543 43.60991 10
Osa02LNT0186600.1 2 Osa02LNG0186600 32730984-32740313 long non-coding(lnc) isoforms of known genes 3319 46.73094 23
Osa02LNT0186500.1 2 Osa02LNG0186500 32783061-32783689 intergenetic lncRNA (lincRNA) 528 55.30303 2
Osa02LNT0481700.1 2 Osa02LNG0481700 32786185-32786440 intergenetic lncRNA (lincRNA) 256 28.90625 1
Osa02LNT0186700.1 2 Osa02LNG0186700 32858196-32870248 long non-coding(lnc) isoforms of known genes 3994 44.84226 20
Osa02LNT0186700.2 2 Osa02LNG0186700 32858196-32870248 long non-coding(lnc) isoforms of known genes 3879 45.3983 21
Osa02LNT0186700.3 2 Osa02LNG0186700 32858196-32870248 long non-coding(lnc) isoforms of known genes 3098 46.12653 20
Osa02LNT0186800.1 2 Osa02LNG0186800 32915390-32918502 long non-coding(lnc) isoforms of known genes 1790 63.85475 4
Osa02LNT0186900.2 2 Osa02LNG0186900 33084391-33093854 long non-coding(lnc) isoforms of known genes 2821 44.73591 19
Osa02LNT0186900.1 2 Osa02LNG0186900 33084391-33093854 long non-coding(lnc) isoforms of known genes 2926 44.29255 18
Osa02LNT0187000.1 2 Osa02LNG0187000 33089901-33090129 intronic lncRNA 229 29.25764 1
Osa02LNT0187100.1 2 Osa02LNG0187100 33129624-33133827 long non-coding(lnc) isoforms of known genes 1540 44.54545 8
Osa02LNT0187200.1 2 Osa02LNG0187200 33170108-33175595 long non-coding(lnc) isoforms of known genes 1229 59.15378 6
Osa02LNT0187200.2 2 Osa02LNG0187200 33170108-33175595 long non-coding(lnc) isoforms of known genes 1233 59.20519 6
Osa02LNT0187300.1 2 Osa02LNG0187300 33199926-33202672 long non-coding(lnc) isoforms of known genes 1290 46.51163 4
Osa02LNT0187500.2 2 Osa02LNG0187500 33253223-33256795 long non-coding(lnc) isoforms of known genes 3688 45.55315 25
Osa02LNT0187500.1 2 Osa02LNG0187500 33253223-33256795 long non-coding(lnc) isoforms of known genes 1439 43.57192 11
Osa02LNT0187400.1 2 Osa02LNG0187400 33284943-33295975 long non-coding(lnc) isoforms of known genes 4827 42.86306 19
Osa02LNT0187600.1 2 Osa02LNG0187600 33476467-33483947 long non-coding(lnc) isoforms of known genes 1793 49.74902 13
Osa02LNT0187700.1 2 Osa02LNG0187700 33511971-33517881 long non-coding(lnc) isoforms of known genes 2181 46.62999 12
Osa02LNT0187800.1 2 Osa02LNG0187800 33530587-33538316 long non-coding(lnc) isoforms of known genes 2814 45.55792 8
Osa02LNT0187900.1 2 Osa02LNG0187900 33532400-33533717 long non-coding(lnc) isoforms of known genes 1085 39.90783 3
Osa02LNT0188000.1 2 Osa02LNG0188000 33541876-33546529 long non-coding(lnc) isoforms of known genes 1550 49.6129 7
Osa02LNT0188100.1 2 Osa02LNG0188100 33629638-33632705 long non-coding(lnc) isoforms of known genes 1393 44.65183 11
Osa02LNT0188200.1 2 Osa02LNG0188200 33647304-33651254 long non-coding(lnc) isoforms of known genes 2450 45.18367 5
Osa02LNT0188300.1 2 Osa02LNG0188300 33734437-33737329 long non-coding(lnc) isoforms of known genes 1399 44.67477 3
Osa02LNT0188400.1 2 Osa02LNG0188400 33758978-33762641 long non-coding(lnc) isoforms of known genes 1511 49.43746 10
Osa02LNT0188500.1 2 Osa02LNG0188500 33876581-33880610 long non-coding(lnc) isoforms of known genes 1630 51.65644 5
Osa02LNT0188600.1 2 Osa02LNG0188600 33885848-33893743 long non-coding(lnc) isoforms of known genes 4643 45.89705 12
Osa02LNT0188700.1 2 Osa02LNG0188700 33982930-33987712 sense lncRNA 689 43.10595 2
Osa02LNT0188800.1 2 Osa02LNG0188800 33991084-33995753 long non-coding(lnc) isoforms of known genes 1501 46.50233 5
Osa02LNT0481800.1 2 Osa02LNG0481800 34079786-34080060 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa02LNT0481900.1 2 Osa02LNG0481900 34079786-34080060 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa02LNT0188900.1 2 Osa02LNG0188900 34090291-34092274 long non-coding(lnc) isoforms of known genes 1464 38.31967 3
Osa02LNT0188900.2 2 Osa02LNG0188900 34090291-34092274 long non-coding(lnc) isoforms of known genes 2554 47.84652 15
Osa02LNT0189200.1 2 Osa02LNG0189200 34114839-34116822 long non-coding(lnc) isoforms of known genes 1338 39.91031 3
Osa02LNT0189100.2 2 Osa02LNG0189100 34146614-34155580 long non-coding(lnc) isoforms of known genes 4400 41.34091 13
Osa02LNT0189100.1 2 Osa02LNG0189100 34146614-34155580 long non-coding(lnc) isoforms of known genes 2202 47.04814 14
Osa02LNT0147100.1 2 Osa02LNG0147100 3415483-3418396 long non-coding(lnc) isoforms of known genes 657 48.85845 4
Osa02LNT0147100.2 2 Osa02LNG0147100 3415483-3418396 long non-coding(lnc) isoforms of known genes 1098 43.07832 4
Osa02LNT0189000.1 2 Osa02LNG0189000 34170247-34176041 long non-coding(lnc) isoforms of known genes 1789 38.62493 7
Osa02LNT0147200.1 2 Osa02LNG0147200 3420286-3423411 long non-coding(lnc) isoforms of known genes 553 54.24955 3
Osa02LNT0189300.1 2 Osa02LNG0189300 34219510-34220367 intergenetic lncRNA (lincRNA) 858 45.8042 1
Osa02LNT0189400.1 2 Osa02LNG0189400 34260822-34263088 long non-coding(lnc) isoforms of known genes 1787 48.57303 4
Osa02LNT0189500.1 2 Osa02LNG0189500 34284701-34287136 intergenetic lncRNA (lincRNA) 2436 40.39409 1
Osa02LNT0189600.1 2 Osa02LNG0189600 34309668-34324237 long non-coding(lnc) isoforms of known genes 1542 56.54994 11
Osa02LNT0189700.2 2 Osa02LNG0189700 34336370-34344186 long non-coding(lnc) isoforms of known genes 3172 46.87894 20
Osa02LNT0189700.1 2 Osa02LNG0189700 34336370-34344186 long non-coding(lnc) isoforms of known genes 3163 46.85425 20
Osa02LNT0189800.1 2 Osa02LNG0189800 34353682-34356804 long non-coding(lnc) isoforms of known genes 1637 51.06903 9
Osa02LNT0189900.1 2 Osa02LNG0189900 34358288-34360428 long non-coding(lnc) isoforms of known genes 1255 52.66932 4
Osa02LNT0189900.2 2 Osa02LNG0189900 34358288-34360428 long non-coding(lnc) isoforms of known genes 1337 52.28123 3
Osa02LNT0190000.1 2 Osa02LNG0190000 34428750-34434091 long non-coding(lnc) isoforms of known genes 3568 49.46749 14
Osa02LNT0482000.1 2 Osa02LNG0482000 34436484-34436739 intergenetic lncRNA (lincRNA) 256 26.17188 1
Osa02LNT0190200.1 2 Osa02LNG0190200 34482713-34483848 long non-coding(lnc) isoforms of known genes 638 47.49216 4
Osa02LNT0190200.2 2 Osa02LNG0190200 34482713-34483848 long non-coding(lnc) isoforms of known genes 700 47.14286 4
Osa02LNT0190100.1 2 Osa02LNG0190100 34493339-34494547 sense lncRNA 857 55.4259 2