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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0482100.1 2 Osa02LNG0482100 34851631-34851861 intergenetic lncRNA (lincRNA) 231 26.83983 1
Osa02LNT0190300.3 2 Osa02LNG0190300 34882568-34888336 long non-coding(lnc) isoforms of known genes 2210 44.0724 17
Osa02LNT0190300.2 2 Osa02LNG0190300 34882568-34888336 long non-coding(lnc) isoforms of known genes 2380 44.36975 18
Osa02LNT0190300.1 2 Osa02LNG0190300 34882568-34888336 long non-coding(lnc) isoforms of known genes 2215 44.06321 17
Osa02LNT0190400.1 2 Osa02LNG0190400 34903151-34910811 long non-coding(lnc) isoforms of known genes 2889 43.82139 18
Osa02LNT0190500.2 2 Osa02LNG0190500 34915787-34917986 long non-coding(lnc) isoforms of known genes 1497 44.68938 7
Osa02LNT0190500.1 2 Osa02LNG0190500 34915787-34917986 long non-coding(lnc) isoforms of known genes 1303 45.51036 9
Osa02LNT0190600.1 2 Osa02LNG0190600 35004914-35008703 long non-coding(lnc) isoforms of known genes 2315 43.19654 11
Osa02LNT0190700.1 2 Osa02LNG0190700 35008809-35009193 intergenetic lncRNA (lincRNA) 269 71.00372 2
Osa02LNT0190800.1 2 Osa02LNG0190800 35056969-35062529 long non-coding(lnc) isoforms of known genes 1580 44.3038 15
Osa02LNT0190900.1 2 Osa02LNG0190900 35115995-35122764 long non-coding(lnc) isoforms of known genes 3405 50.22026 10
Osa02LNT0191000.1 2 Osa02LNG0191000 35170618-35175115 long non-coding(lnc) isoforms of known genes 2412 49.46103 7
Osa02LNT0191100.1 2 Osa02LNG0191100 35179248-35184143 long non-coding(lnc) isoforms of known genes 1768 50.39593 13
Osa02LNT0191200.1 2 Osa02LNG0191200 35256169-35258226 long non-coding(lnc) isoforms of known genes 954 50.10482 4
Osa02LNT0191400.1 2 Osa02LNG0191400 35307893-35313608 long non-coding(lnc) isoforms of known genes 3214 46.57747 8
Osa02LNT0191300.1 2 Osa02LNG0191300 35325638-35331918 long non-coding(lnc) isoforms of known genes 2632 43.69301 13
Osa02LNT0191500.1 2 Osa02LNG0191500 35421604-35423681 long non-coding(lnc) isoforms of known genes 557 47.39677 2
Osa02LNT0191700.1 2 Osa02LNG0191700 35452274-35459895 long non-coding(lnc) isoforms of known genes 4802 45.85589 14
Osa02LNT0191700.2 2 Osa02LNG0191700 35452274-35459895 long non-coding(lnc) isoforms of known genes 2792 51.5043 15
Osa02LNT0191600.1 2 Osa02LNG0191600 35460664-35464861 long non-coding(lnc) isoforms of known genes 2978 37.70987 4
Osa02LNT0191800.1 2 Osa02LNG0191800 35502083-35507039 long non-coding(lnc) isoforms of known genes 2636 49.35508 10
Osa02LNT0191900.1 2 Osa02LNG0191900 35517553-35523356 long non-coding(lnc) isoforms of known genes 2405 47.94179 18
Osa02LNT0147400.1 2 Osa02LNG0147400 3557495-3558801 intergenetic lncRNA (lincRNA) 567 38.62434 2
Osa02LNT0147300.1 2 Osa02LNG0147300 3561963-3562601 intergenetic lncRNA (lincRNA) 639 32.39437 1
Osa02LNT0192000.1 2 Osa02LNG0192000 35667571-35671730 long non-coding(lnc) isoforms of known genes 2093 52.50836 12
Osa02LNT0192100.1 2 Osa02LNG0192100 35713123-35713706 intergenetic lncRNA (lincRNA) 584 47.43151 1
Osa02LNT0192200.1 2 Osa02LNG0192200 35757157-35757652 intronic lncRNA 496 29.03226 1
Osa02LNT0192300.1 2 Osa02LNG0192300 35761332-35768388 long non-coding(lnc) isoforms of known genes 2878 46.10841 22
Osa02LNT0147500.1 2 Osa02LNG0147500 3580321-3581706 sense lncRNA 841 50.8918 2
Osa02LNT0192400.1 2 Osa02LNG0192400 35812639-35818178 long non-coding(lnc) isoforms of known genes 1834 48.96401 18
Osa02LNT0192500.1 2 Osa02LNG0192500 35932596-35933176 intergenetic lncRNA (lincRNA) 581 46.4716 1
Osa02LNT0147700.2 2 Osa02LNG0147700 3623786-3631539 long non-coding(lnc) isoforms of known genes 4434 44.54217 15
Osa02LNT0147700.1 2 Osa02LNG0147700 3623786-3631539 long non-coding(lnc) isoforms of known genes 3520 46.875 16
Osa02LNT0147700.3 2 Osa02LNG0147700 3623786-3631539 long non-coding(lnc) isoforms of known genes 3863 45.68988 16
Osa02LNT0147600.1 2 Osa02LNG0147600 3655262-3656228 sense lncRNA 694 50.14409 2
Osa02LNT0147800.2 2 Osa02LNG0147800 3705886-3709861 long non-coding(lnc) isoforms of known genes 1119 45.48704 10
Osa02LNT0147800.1 2 Osa02LNG0147800 3705886-3709861 long non-coding(lnc) isoforms of known genes 1091 45.46288 10
Osa02LNT0473300.1 2 Osa02LNG0473300 3742238-3742515 intergenetic lncRNA (lincRNA) 278 46.40288 1
Osa02LNT0473400.1 2 Osa02LNG0473400 3742239-3742516 intergenetic lncRNA (lincRNA) 278 46.04317 1
Osa02LNT0147900.1 2 Osa02LNG0147900 3846223-3850113 long non-coding(lnc) isoforms of known genes 1296 52.5463 3
Osa02LNT0148100.1 2 Osa02LNG0148100 3855966-3863856 long non-coding(lnc) isoforms of known genes 1933 43.5075 14
Osa02LNT0148000.1 2 Osa02LNG0148000 3925270-3926116 intergenetic lncRNA (lincRNA) 847 57.49705 1
Osa02LNT0473500.1 2 Osa02LNG0473500 3939456-3939729 intergenetic lncRNA (lincRNA) 274 29.92701 1
Osa02LNT0473600.1 2 Osa02LNG0473600 3939456-3939729 intergenetic lncRNA (lincRNA) 274 29.92701 1
Osa02LNT0148200.1 2 Osa02LNG0148200 3950459-3955968 long non-coding(lnc) isoforms of known genes 3201 47.29772 9
Osa02LNT0473700.1 2 Osa02LNG0473700 3963618-3963872 intergenetic lncRNA (lincRNA) 255 27.84314 1
Osa02LNT0148300.2 2 Osa02LNG0148300 3992137-3995037 long non-coding(lnc) isoforms of known genes 1202 50.99834 8
Osa02LNT0148300.1 2 Osa02LNG0148300 3992137-3995037 long non-coding(lnc) isoforms of known genes 1199 51.04254 8
Osa02LNT0148400.1 2 Osa02LNG0148400 4057866-4060817 long non-coding(lnc) isoforms of known genes 1996 55.51102 6
Osa02LNT0148500.3 2 Osa02LNG0148500 4165386-4175490 long non-coding(lnc) isoforms of known genes 4501 45.83426 17
Osa02LNT0148500.2 2 Osa02LNG0148500 4165386-4175490 long non-coding(lnc) isoforms of known genes 1528 46.79319 7
Osa02LNT0148500.1 2 Osa02LNG0148500 4165386-4175490 long non-coding(lnc) isoforms of known genes 3778 48.78242 19
Osa02LNT0148600.3 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4563 46.41683 32
Osa02LNT0148600.2 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4758 44.32535 33
Osa02LNT0148600.4 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4366 45.05268 35
Osa02LNT0148600.1 2 Osa02LNG0148600 4195375-4209110 long non-coding(lnc) isoforms of known genes 4530 46.66667 35
Osa02LNT0139900.1 2 Osa02LNG0139900 434565-436081 sense lncRNA 1421 59.04293 2
Osa02LNT0148700.1 2 Osa02LNG0148700 4420596-4421919 intergenetic lncRNA (lincRNA) 1324 37.68882 1
Osa02LNT0148800.1 2 Osa02LNG0148800 4455016-4457715 long non-coding(lnc) isoforms of known genes 2043 46.15761 5
Osa02LNT0148900.1 2 Osa02LNG0148900 4574675-4576646 long non-coding(lnc) isoforms of known genes 1872 42.57479 2
Osa02LNT0149000.1 2 Osa02LNG0149000 4604019-4607369 long non-coding(lnc) isoforms of known genes 1807 50.52573 10
Osa02LNT0149100.1 2 Osa02LNG0149100 4696839-4699508 Antisense lncRNA 350 56.0 3
Osa02LNT0149200.1 2 Osa02LNG0149200 4838513-4841877 long non-coding(lnc) isoforms of known genes 2023 47.10826 4
Osa02LNT0149300.1 2 Osa02LNG0149300 4843988-4847197 long non-coding(lnc) isoforms of known genes 1432 48.67318 10
Osa02LNT0149400.1 2 Osa02LNG0149400 4847753-4852502 long non-coding(lnc) isoforms of known genes 2485 55.5332 10
Osa02LNT0140000.1 2 Osa02LNG0140000 493564-494358 intergenetic lncRNA (lincRNA) 542 53.50554 2
Osa02LNT0140000.2 2 Osa02LNG0140000 493564-494358 intergenetic lncRNA (lincRNA) 556 53.05755 2
Osa02LNT0149600.1 2 Osa02LNG0149600 4949654-4952351 long non-coding(lnc) isoforms of known genes 1466 58.5266 2
Osa02LNT0149500.1 2 Osa02LNG0149500 4953842-4954058 intergenetic lncRNA (lincRNA) 217 24.88479 1
Osa02LNT0140100.1 2 Osa02LNG0140100 496768-500351 long non-coding(lnc) isoforms of known genes 1571 51.3049 11
Osa02LNT0149700.1 2 Osa02LNG0149700 4967973-4972928 long non-coding(lnc) isoforms of known genes 869 43.95857 2
Osa02LNT0149700.2 2 Osa02LNG0149700 4967973-4972928 long non-coding(lnc) isoforms of known genes 805 46.45963 3
Osa02LNT0139200.1 2 Osa02LNG0139200 50407-55874 long non-coding(lnc) isoforms of known genes 2133 48.0075 12
Osa02LNT0149800.1 2 Osa02LNG0149800 5058825-5062592 long non-coding(lnc) isoforms of known genes 2390 47.36402 6
Osa02LNT0140200.1 2 Osa02LNG0140200 508837-517246 long non-coding(lnc) isoforms of known genes 3545 45.07757 15
Osa02LNT0149900.1 2 Osa02LNG0149900 5118296-5121512 long non-coding(lnc) isoforms of known genes 2076 55.39499 4
Osa02LNT0150000.1 2 Osa02LNG0150000 5220258-5228047 long non-coding(lnc) isoforms of known genes 5212 41.84574 12
Osa02LNT0150000.2 2 Osa02LNG0150000 5220258-5228047 long non-coding(lnc) isoforms of known genes 5040 38.96825 11
Osa02LNT0150100.1 2 Osa02LNG0150100 5224812-5225130 intergenetic lncRNA (lincRNA) 319 38.24451 1
Osa02LNT0150200.1 2 Osa02LNG0150200 5254204-5257590 long non-coding(lnc) isoforms of known genes 1544 54.14508 7
Osa02LNT0150300.1 2 Osa02LNG0150300 5322829-5323410 intronic lncRNA 582 28.69416 1
Osa02LNT0150400.1 2 Osa02LNG0150400 5331919-5336909 long non-coding(lnc) isoforms of known genes 1914 48.32811 10
Osa02LNT0150500.1 2 Osa02LNG0150500 5373105-5380171 long non-coding(lnc) isoforms of known genes 2477 51.43319 16
Osa02LNT0150600.1 2 Osa02LNG0150600 5422168-5426063 long non-coding(lnc) isoforms of known genes 1480 48.64865 13
Osa02LNT0150700.1 2 Osa02LNG0150700 5465074-5468118 long non-coding(lnc) isoforms of known genes 1784 52.13004 4
Osa02LNT0150800.1 2 Osa02LNG0150800 5478759-5480881 long non-coding(lnc) isoforms of known genes 1613 46.6832 2
Osa02LNT0140300.1 2 Osa02LNG0140300 549346-551218 intergenetic lncRNA (lincRNA) 1588 42.75819 3
Osa02LNT0150900.1 2 Osa02LNG0150900 5511243-5517860 long non-coding(lnc) isoforms of known genes 3726 47.04777 21
Osa02LNT0151000.1 2 Osa02LNG0151000 5587185-5593645 long non-coding(lnc) isoforms of known genes 3806 46.1114 9
Osa02LNT0151100.1 2 Osa02LNG0151100 5595457-5598161 long non-coding(lnc) isoforms of known genes 1394 44.97848 7
Osa02LNT0151200.1 2 Osa02LNG0151200 5640781-5644543 long non-coding(lnc) isoforms of known genes 1013 50.83909 5
Osa02LNT0151300.2 2 Osa02LNG0151300 5663142-5668400 long non-coding(lnc) isoforms of known genes 2402 49.75021 5
Osa02LNT0151300.1 2 Osa02LNG0151300 5663142-5668400 long non-coding(lnc) isoforms of known genes 2298 50.39164 6
Osa02LNT0140500.1 2 Osa02LNG0140500 573103-590234 long non-coding(lnc) isoforms of known genes 8919 43.099 19
Osa02LNT0140500.2 2 Osa02LNG0140500 573103-590234 long non-coding(lnc) isoforms of known genes 8490 43.47468 20
Osa02LNT0151400.1 2 Osa02LNG0151400 5740443-5742451 long non-coding(lnc) isoforms of known genes 766 53.91645 5
Osa02LNT0151500.1 2 Osa02LNG0151500 5744912-5748113 long non-coding(lnc) isoforms of known genes 1204 49.33555 8
Osa02LNT0473800.1 2 Osa02LNG0473800 5797029-5797254 intergenetic lncRNA (lincRNA) 226 48.67257 1
Osa02LNT0151600.1 2 Osa02LNG0151600 5798925-5806527 long non-coding(lnc) isoforms of known genes 1041 56.67627 5
Osa02LNT0151600.2 2 Osa02LNG0151600 5798925-5806527 long non-coding(lnc) isoforms of known genes 1069 56.12722 5