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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0151700.1 2 Osa02LNG0151700 5816433-5818937 intergenetic lncRNA (lincRNA) 760 54.34211 2
Osa02LNT0151800.1 2 Osa02LNG0151800 5910515-5912009 sense lncRNA 387 48.57881 2
Osa02LNT0151900.2 2 Osa02LNG0151900 5912676-5914192 long non-coding(lnc) isoforms of known genes 1306 67.22818 4
Osa02LNT0151900.1 2 Osa02LNG0151900 5912676-5914192 long non-coding(lnc) isoforms of known genes 1360 68.01471 3
Osa02LNT0152000.1 2 Osa02LNG0152000 5964373-5967661 long non-coding(lnc) isoforms of known genes 1458 60.42524 3
Osa02LNT0152100.1 2 Osa02LNG0152100 6014090-6015999 intergenetic lncRNA (lincRNA) 789 46.51458 3
Osa02LNT0152300.2 2 Osa02LNG0152300 6119126-6128455 long non-coding(lnc) isoforms of known genes 2330 41.58798 18
Osa02LNT0152300.1 2 Osa02LNG0152300 6119126-6128455 long non-coding(lnc) isoforms of known genes 2990 42.14047 24
Osa02LNT0152300.3 2 Osa02LNG0152300 6119126-6128455 long non-coding(lnc) isoforms of known genes 2339 41.51347 17
Osa02LNT0152300.4 2 Osa02LNG0152300 6119126-6128455 long non-coding(lnc) isoforms of known genes 3200 44.71875 26
Osa02LNT0152400.1 2 Osa02LNG0152400 6128565-6129212 Antisense lncRNA 267 58.05243 3
Osa02LNT0140400.1 2 Osa02LNG0140400 616208-617444 intergenetic lncRNA (lincRNA) 883 39.8641 4
Osa02LNT0152200.1 2 Osa02LNG0152200 6171980-6173926 intergenetic lncRNA (lincRNA) 712 55.33708 2
Osa02LNT0152600.1 2 Osa02LNG0152600 6207691-6213759 Antisense lncRNA 636 44.96855 2
Osa02LNT0152600.2 2 Osa02LNG0152600 6207691-6213759 intergenetic lncRNA (lincRNA) 535 37.57009 2
Osa02LNT0152500.1 2 Osa02LNG0152500 6219541-6220451 intergenetic lncRNA (lincRNA) 610 44.42623 2
Osa02LNT0152700.1 2 Osa02LNG0152700 6251412-6252359 intergenetic lncRNA (lincRNA) 833 36.37455 2
Osa02LNT0473900.1 2 Osa02LNG0473900 6334731-6334972 intergenetic lncRNA (lincRNA) 242 26.8595 1
Osa02LNT0474100.1 2 Osa02LNG0474100 6335072-6335280 intergenetic lncRNA (lincRNA) 209 24.88038 1
Osa02LNT0474000.1 2 Osa02LNG0474000 6335072-6335280 intergenetic lncRNA (lincRNA) 209 24.88038 1
Osa02LNT0152800.1 2 Osa02LNG0152800 6406068-6415381 intergenetic lncRNA (lincRNA) 579 45.76857 3
Osa02LNT0152800.2 2 Osa02LNG0152800 6406068-6415381 intergenetic lncRNA (lincRNA) 781 44.55826 3
Osa02LNT0152900.3 2 Osa02LNG0152900 6433109-6441682 long non-coding(lnc) isoforms of known genes 3183 51.46089 13
Osa02LNT0152900.2 2 Osa02LNG0152900 6433109-6441682 long non-coding(lnc) isoforms of known genes 3653 49.35669 12
Osa02LNT0152900.1 2 Osa02LNG0152900 6433109-6441682 long non-coding(lnc) isoforms of known genes 3127 51.48705 12
Osa02LNT0153000.1 2 Osa02LNG0153000 6450649-6451371 intronic lncRNA 723 59.61272 1
Osa02LNT0153100.1 2 Osa02LNG0153100 6495518-6495748 intronic lncRNA 231 42.85714 1
Osa02LNT0153200.1 2 Osa02LNG0153200 6529761-6532965 long non-coding(lnc) isoforms of known genes 1542 46.49805 4
Osa02LNT0153400.2 2 Osa02LNG0153400 6533712-6538109 sense lncRNA 1844 49.89154 4
Osa02LNT0153400.1 2 Osa02LNG0153400 6533712-6538109 sense lncRNA 4069 41.5827 4
Osa02LNT0153300.1 2 Osa02LNG0153300 6543707-6543983 intergenetic lncRNA (lincRNA) 277 56.6787 1
Osa02LNT0153500.1 2 Osa02LNG0153500 6566013-6566731 intergenetic lncRNA (lincRNA) 719 64.39499 1
Osa02LNT0153600.1 2 Osa02LNG0153600 6668862-6672904 long non-coding(lnc) isoforms of known genes 1578 46.4512 10
Osa02LNT0153700.1 2 Osa02LNG0153700 6680307-6682999 long non-coding(lnc) isoforms of known genes 2192 42.83759 2
Osa02LNT0153800.1 2 Osa02LNG0153800 6711502-6716673 intergenetic lncRNA (lincRNA) 784 49.23469 4
Osa02LNT0153900.1 2 Osa02LNG0153900 6771469-6779351 Antisense lncRNA 455 62.85714 2
Osa02LNT0154000.1 2 Osa02LNG0154000 6784377-6788332 long non-coding(lnc) isoforms of known genes 1668 51.19904 8
Osa02LNT0154100.1 2 Osa02LNG0154100 7012512-7017442 long non-coding(lnc) isoforms of known genes 1137 54.26561 3
Osa02LNT0154200.1 2 Osa02LNG0154200 7032348-7034859 long non-coding(lnc) isoforms of known genes 1101 55.1317 4
Osa02LNT0474200.1 2 Osa02LNG0474200 7140018-7140234 intergenetic lncRNA (lincRNA) 217 26.26728 1
Osa02LNT0474300.1 2 Osa02LNG0474300 7214168-7214418 intergenetic lncRNA (lincRNA) 251 27.88845 1
Osa02LNT0474400.1 2 Osa02LNG0474400 7214168-7214418 intergenetic lncRNA (lincRNA) 251 27.88845 1
Osa02LNT0474500.1 2 Osa02LNG0474500 7261433-7261670 intergenetic lncRNA (lincRNA) 238 28.9916 1
Osa02LNT0154300.2 2 Osa02LNG0154300 7312011-7314657 long non-coding(lnc) isoforms of known genes 515 60.97087 3
Osa02LNT0154300.1 2 Osa02LNG0154300 7312011-7314657 long non-coding(lnc) isoforms of known genes 484 63.42975 3
Osa02LNT0154400.1 2 Osa02LNG0154400 7323916-7325166 sense lncRNA 858 46.2704 3
Osa02LNT0140600.1 2 Osa02LNG0140600 748721-759539 long non-coding(lnc) isoforms of known genes 7261 47.34885 14
Osa02LNT0154500.1 2 Osa02LNG0154500 7630948-7635189 long non-coding(lnc) isoforms of known genes 1533 47.61905 8
Osa02LNT0154600.1 2 Osa02LNG0154600 7796989-7797242 intergenetic lncRNA (lincRNA) 254 53.14961 1
Osa02LNT0474600.1 2 Osa02LNG0474600 7973039-7973283 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa02LNT0474700.1 2 Osa02LNG0474700 7973039-7973284 intergenetic lncRNA (lincRNA) 246 25.60976 1
Osa02LNT0154700.2 2 Osa02LNG0154700 7991943-7996772 long non-coding(lnc) isoforms of known genes 2348 46.03918 9
Osa02LNT0154700.1 2 Osa02LNG0154700 7991943-7996772 long non-coding(lnc) isoforms of known genes 2782 44.17685 9
Osa02LNT0154800.1 2 Osa02LNG0154800 7998325-8002599 intergenetic lncRNA (lincRNA) 3950 42.98734 4
Osa02LNT0474800.1 2 Osa02LNG0474800 8196351-8196574 intergenetic lncRNA (lincRNA) 224 37.5 1
Osa02LNT0474900.1 2 Osa02LNG0474900 8231317-8231560 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa02LNT0475000.1 2 Osa02LNG0475000 8231317-8231560 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa02LNT0475100.1 2 Osa02LNG0475100 8231627-8231871 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa02LNT0154900.1 2 Osa02LNG0154900 8232000-8232941 intergenetic lncRNA (lincRNA) 942 59.97877 1
Osa02LNT0155000.1 2 Osa02LNG0155000 8251528-8254272 intergenetic lncRNA (lincRNA) 652 43.25153 2
Osa02LNT0155100.2 2 Osa02LNG0155100 8518517-8535707 Antisense lncRNA 1490 44.69799 8
Osa02LNT0155100.1 2 Osa02LNG0155100 8518517-8535707 Antisense lncRNA 1575 44.25397 7
Osa02LNT0140700.2 2 Osa02LNG0140700 853795-859876 long non-coding(lnc) isoforms of known genes 1566 44.69987 7
Osa02LNT0140700.1 2 Osa02LNG0140700 853795-859876 long non-coding(lnc) isoforms of known genes 1714 44.69078 8
Osa02LNT0155200.1 2 Osa02LNG0155200 8553961-8558162 long non-coding(lnc) isoforms of known genes 2134 45.54827 7
Osa02LNT0139400.1 2 Osa02LNG0139400 86724-91573 long non-coding(lnc) isoforms of known genes 2928 43.30601 11
Osa02LNT0155300.1 2 Osa02LNG0155300 8700431-8703157 sense lncRNA 2249 44.81992 2
Osa02LNT0155400.1 2 Osa02LNG0155400 8726689-8730601 long non-coding(lnc) isoforms of known genes 1562 49.80794 12
Osa02LNT0155500.1 2 Osa02LNG0155500 8747058-8755901 long non-coding(lnc) isoforms of known genes 2825 43.82301 8
Osa02LNT0155600.1 2 Osa02LNG0155600 8810104-8820953 long non-coding(lnc) isoforms of known genes 6098 47.09741 23
Osa02LNT0155700.1 2 Osa02LNG0155700 8875346-8875545 Antisense lncRNA 200 57.5 1
Osa02LNT0155800.1 2 Osa02LNG0155800 8976813-8981094 long non-coding(lnc) isoforms of known genes 1778 45.89426 8
Osa02LNT0155900.1 2 Osa02LNG0155900 9005264-9007478 long non-coding(lnc) isoforms of known genes 1465 48.3959 4
Osa02LNT0475200.1 2 Osa02LNG0475200 9051971-9052222 intergenetic lncRNA (lincRNA) 252 24.20635 1
Osa02LNT0475300.1 2 Osa02LNG0475300 9099744-9099943 intergenetic lncRNA (lincRNA) 200 35.0 1
Osa02LNT0139500.1 2 Osa02LNG0139500 92792-93560 Antisense lncRNA 300 43.33333 3
Osa02LNT0140800.1 2 Osa02LNG0140800 930302-934270 long non-coding(lnc) isoforms of known genes 2454 48.73676 7
Osa02LNT0140900.1 2 Osa02LNG0140900 934683-937771 long non-coding(lnc) isoforms of known genes 1451 59.54514 4
Osa02LNT0139600.1 2 Osa02LNG0139600 93621-96474 Antisense lncRNA 1212 57.50825 6
Osa02LNT0156000.1 2 Osa02LNG0156000 9458279-9463658 long non-coding(lnc) isoforms of known genes 1057 55.62914 4
Osa02LNT0475400.1 2 Osa02LNG0475400 9782519-9782772 intergenetic lncRNA (lincRNA) 254 28.34646 1
Osa02LNT0139300.2 2 Osa02LNG0139300 98001-107379 long non-coding(lnc) isoforms of known genes 2559 41.42243 21
Osa02LNT0139300.1 2 Osa02LNG0139300 98001-107379 long non-coding(lnc) isoforms of known genes 2676 42.18984 23
Osa02LNT0156100.1 2 Osa02LNG0156100 9917022-9928340 long non-coding(lnc) isoforms of known genes 8270 46.89238 5
Osa02LNT0156200.1 2 Osa02LNG0156200 9928936-9937374 long non-coding(lnc) isoforms of known genes 1960 44.79592 16
Osa02LNT0156300.1 2 Osa02LNG0156300 9981667-9985833 long non-coding(lnc) isoforms of known genes 2493 50.14039 7
Osa03LNT0208200.2 3 Osa03LNG0208200 10090151-10097850 long non-coding(lnc) isoforms of known genes 2579 44.97867 19
Osa03LNT0208200.1 3 Osa03LNG0208200 10090151-10097850 long non-coding(lnc) isoforms of known genes 2607 44.99425 19
Osa03LNT0208300.1 3 Osa03LNG0208300 10120289-10124384 long non-coding(lnc) isoforms of known genes 2744 58.27259 12
Osa03LNT0208400.1 3 Osa03LNG0208400 10191644-10200058 long non-coding(lnc) isoforms of known genes 3687 39.38161 16
Osa03LNT0208500.4 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3950 39.79747 6
Osa03LNT0208500.3 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3610 38.94737 8
Osa03LNT0208500.2 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3612 42.41417 10
Osa03LNT0208500.1 3 Osa03LNG0208500 10233331-10240440 long non-coding(lnc) isoforms of known genes 3987 41.25909 10
Osa03LNT0208600.2 3 Osa03LNG0208600 10241251-10246038 long non-coding(lnc) isoforms of known genes 3034 42.48517 5
Osa03LNT0208600.1 3 Osa03LNG0208600 10241251-10246038 long non-coding(lnc) isoforms of known genes 3116 42.42619 4
Osa03LNT0208600.3 3 Osa03LNG0208600 10241251-10246038 long non-coding(lnc) isoforms of known genes 1678 49.46365 7
Osa03LNT0194400.1 3 Osa03LNG0194400 1027590-1031440 long non-coding(lnc) isoforms of known genes 2888 52.56233 9
Osa03LNT0208700.1 3 Osa03LNG0208700 10298989-10305409 long non-coding(lnc) isoforms of known genes 3742 46.84661 6
Osa03LNT0208800.1 3 Osa03LNG0208800 10320222-10324794 long non-coding(lnc) isoforms of known genes 1940 45.30928 8