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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0000100.1 1 Osa01LNG0000100 224917-225649 intergenetic lncRNA (lincRNA) 733 57.02592 1
Osa01LNT0459200.1 1 Osa01LNG0459200 22521864-22522077 intergenetic lncRNA (lincRNA) 214 40.18692 1
Osa01LNT0459300.1 1 Osa01LNG0459300 22522592-22522836 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa01LNT0025200.2 1 Osa01LNG0025200 22556276-22561372 long non-coding(lnc) isoforms of known genes 2545 44.36149 4
Osa01LNT0025200.1 1 Osa01LNG0025200 22556276-22561372 long non-coding(lnc) isoforms of known genes 2631 43.86165 4
Osa01LNT0025300.1 1 Osa01LNG0025300 22591434-22596157 long non-coding(lnc) isoforms of known genes 1859 48.09037 11
Osa01LNT0002400.3 1 Osa01LNG0002400 2266353-2271044 long non-coding(lnc) isoforms of known genes 2457 45.38055 12
Osa01LNT0002400.1 1 Osa01LNG0002400 2266353-2271044 long non-coding(lnc) isoforms of known genes 2469 45.5245 12
Osa01LNT0002400.2 1 Osa01LNG0002400 2266353-2271044 long non-coding(lnc) isoforms of known genes 2100 46.14286 13
Osa01LNT0025400.1 1 Osa01LNG0025400 22820253-22823095 long non-coding(lnc) isoforms of known genes 1759 48.49346 6
Osa01LNT0454500.1 1 Osa01LNG0454500 2310102-2310319 intergenetic lncRNA (lincRNA) 218 39.90826 1
Osa01LNT0025500.1 1 Osa01LNG0025500 23163385-23168478 sense lncRNA 263 49.80989 2
Osa01LNT0025600.1 1 Osa01LNG0025600 23224373-23226605 long non-coding(lnc) isoforms of known genes 629 43.87917 3
Osa01LNT0459400.1 1 Osa01LNG0459400 23310233-23310507 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa01LNT0025700.1 1 Osa01LNG0025700 23431338-23438126 intergenetic lncRNA (lincRNA) 968 42.66529 3
Osa01LNT0459500.1 1 Osa01LNG0459500 23560703-23560940 intergenetic lncRNA (lincRNA) 238 27.31092 1
Osa01LNT0025800.1 1 Osa01LNG0025800 23584039-23585690 sense lncRNA 1310 56.10687 2
Osa01LNT0025900.1 1 Osa01LNG0025900 23644840-23646066 intergenetic lncRNA (lincRNA) 1034 47.58221 2
Osa01LNT0026000.1 1 Osa01LNG0026000 23673178-23675011 long non-coding(lnc) isoforms of known genes 1236 45.38835 3
Osa01LNT0026100.1 1 Osa01LNG0026100 23682750-23685395 long non-coding(lnc) isoforms of known genes 1242 57.40741 4
Osa01LNT0026200.1 1 Osa01LNG0026200 23815187-23819246 long non-coding(lnc) isoforms of known genes 1348 46.81009 10
Osa01LNT0002500.1 1 Osa01LNG0002500 2388605-2390483 long non-coding(lnc) isoforms of known genes 1448 46.20166 4
Osa01LNT0026300.2 1 Osa01LNG0026300 24046254-24048735 sense lncRNA 1032 50.0969 2
Osa01LNT0026300.1 1 Osa01LNG0026300 24046254-24048735 sense lncRNA 2351 43.21565 2
Osa01LNT0026400.1 1 Osa01LNG0026400 24124897-24125515 intergenetic lncRNA (lincRNA) 619 46.84976 1
Osa01LNT0026600.1 1 Osa01LNG0026600 24155649-24162572 long non-coding(lnc) isoforms of known genes 4030 44.83871 14
Osa01LNT0026600.2 1 Osa01LNG0026600 24155649-24162572 long non-coding(lnc) isoforms of known genes 1109 57.98016 3
Osa01LNT0002600.1 1 Osa01LNG0002600 2415657-2418970 sense lncRNA 1485 51.17845 3
Osa01LNT0026500.1 1 Osa01LNG0026500 24168245-24171714 long non-coding(lnc) isoforms of known genes 1190 53.10924 6
Osa01LNT0026700.1 1 Osa01LNG0026700 24245817-24249378 long non-coding(lnc) isoforms of known genes 1764 46.65533 11
Osa01LNT0026700.2 1 Osa01LNG0026700 24245817-24249378 long non-coding(lnc) isoforms of known genes 1756 46.64009 11
Osa01LNT0026800.1 1 Osa01LNG0026800 24354170-24360437 long non-coding(lnc) isoforms of known genes 1633 46.29516 13
Osa01LNT0026800.2 1 Osa01LNG0026800 24354170-24360437 long non-coding(lnc) isoforms of known genes 1747 45.62106 12
Osa01LNT0027000.1 1 Osa01LNG0027000 24380643-24386562 long non-coding(lnc) isoforms of known genes 3348 45.16129 20
Osa01LNT0026900.1 1 Osa01LNG0026900 24390630-24391832 long non-coding(lnc) isoforms of known genes 768 41.79688 2
Osa01LNT0027100.1 1 Osa01LNG0027100 24471977-24478429 long non-coding(lnc) isoforms of known genes 2956 43.97835 11
Osa01LNT0027200.1 1 Osa01LNG0027200 24498873-24504871 long non-coding(lnc) isoforms of known genes 2268 46.51675 21
Osa01LNT0002700.1 1 Osa01LNG0002700 2459409-2462326 intergenetic lncRNA (lincRNA) 975 49.74359 2
Osa01LNT0027300.1 1 Osa01LNG0027300 24616208-24622775 long non-coding(lnc) isoforms of known genes 2406 47.29842 17
Osa01LNT0027400.1 1 Osa01LNG0027400 24633776-24639213 long non-coding(lnc) isoforms of known genes 3941 45.01396 11
Osa01LNT0027500.1 1 Osa01LNG0027500 24696141-24697792 sense lncRNA 400 42.0 4
Osa01LNT0027500.2 1 Osa01LNG0027500 24696141-24697792 sense lncRNA 397 41.8136 4
Osa01LNT0027600.1 1 Osa01LNG0027600 24753661-24758860 long non-coding(lnc) isoforms of known genes 1850 58.91892 6
Osa01LNT0027600.2 1 Osa01LNG0027600 24753661-24758860 long non-coding(lnc) isoforms of known genes 1678 59.118 3
Osa01LNT0027700.1 1 Osa01LNG0027700 24763107-24768246 long non-coding(lnc) isoforms of known genes 3074 47.7879 5
Osa01LNT0027900.1 1 Osa01LNG0027900 24813615-24815635 sense lncRNA 947 47.83527 4
Osa01LNT0027800.1 1 Osa01LNG0027800 24823998-24828139 long non-coding(lnc) isoforms of known genes 2551 45.58996 4
Osa01LNT0028000.3 1 Osa01LNG0028000 25019249-25021608 long non-coding(lnc) isoforms of known genes 634 55.67823 3
Osa01LNT0028000.1 1 Osa01LNG0028000 25019249-25021608 sense lncRNA 722 56.23269 2
Osa01LNT0028000.2 1 Osa01LNG0028000 25019249-25021608 long non-coding(lnc) isoforms of known genes 2285 42.49453 2
Osa01LNT0028100.1 1 Osa01LNG0028100 25029829-25033240 long non-coding(lnc) isoforms of known genes 2786 42.13927 3
Osa01LNT0028200.1 1 Osa01LNG0028200 25146410-25147480 sense lncRNA 1071 54.52848 1
Osa01LNT0028300.1 1 Osa01LNG0028300 25324428-25326862 intergenetic lncRNA (lincRNA) 2435 42.21766 1
Osa01LNT0028400.1 1 Osa01LNG0028400 25391565-25392161 intergenetic lncRNA (lincRNA) 597 39.02848 1
Osa01LNT0028500.1 1 Osa01LNG0028500 25417261-25425888 sense lncRNA 4865 43.94656 8
Osa01LNT0028500.2 1 Osa01LNG0028500 25417261-25425888 long non-coding(lnc) isoforms of known genes 4939 43.89553 8
Osa01LNT0028700.1 1 Osa01LNG0028700 25520058-25523268 long non-coding(lnc) isoforms of known genes 992 49.79839 7
Osa01LNT0028800.1 1 Osa01LNG0028800 25524187-25532029 long non-coding(lnc) isoforms of known genes 3702 40.46461 24
Osa01LNT0028600.1 1 Osa01LNG0028600 25547516-25548880 intergenetic lncRNA (lincRNA) 1365 47.03297 1
Osa01LNT0002800.1 1 Osa01LNG0002800 2575517-2578000 long non-coding(lnc) isoforms of known genes 663 46.60633 4
Osa01LNT0028900.1 1 Osa01LNG0028900 25777452-25782309 long non-coding(lnc) isoforms of known genes 1482 42.30769 9
Osa01LNT0029000.1 1 Osa01LNG0029000 25836448-25843494 long non-coding(lnc) isoforms of known genes 887 58.28636 5
Osa01LNT0002900.1 1 Osa01LNG0002900 2584986-2588279 long non-coding(lnc) isoforms of known genes 2454 47.84026 8
Osa01LNT0459600.1 1 Osa01LNG0459600 25905997-25906252 intergenetic lncRNA (lincRNA) 256 29.29688 1
Osa01LNT0459700.1 1 Osa01LNG0459700 25905997-25906252 intergenetic lncRNA (lincRNA) 256 29.29688 1
Osa01LNT0029100.1 1 Osa01LNG0029100 25917636-25922976 long non-coding(lnc) isoforms of known genes 1905 50.13123 9
Osa01LNT0459800.1 1 Osa01LNG0459800 25948301-25948541 intergenetic lncRNA (lincRNA) 241 25.3112 1
Osa01LNT0029200.1 1 Osa01LNG0029200 26051800-26053799 intergenetic lncRNA (lincRNA) 688 54.94186 3
Osa01LNT0029300.1 1 Osa01LNG0029300 26060892-26071730 long non-coding(lnc) isoforms of known genes 7339 47.75855 17
Osa01LNT0029300.2 1 Osa01LNG0029300 26060892-26071730 long non-coding(lnc) isoforms of known genes 7610 47.3456 17
Osa01LNT0029300.3 1 Osa01LNG0029300 26060892-26071730 long non-coding(lnc) isoforms of known genes 2039 49.7793 15
Osa01LNT0029400.1 1 Osa01LNG0029400 26111955-26114140 long non-coding(lnc) isoforms of known genes 1143 49.78128 4
Osa01LNT0029500.1 1 Osa01LNG0029500 26246089-26248246 intergenetic lncRNA (lincRNA) 1272 50.55031 2
Osa01LNT0029600.1 1 Osa01LNG0029600 26278129-26285078 long non-coding(lnc) isoforms of known genes 5212 40.96316 12
Osa01LNT0029600.2 1 Osa01LNG0029600 26278129-26285078 long non-coding(lnc) isoforms of known genes 5220 40.9387 12
Osa01LNT0029700.1 1 Osa01LNG0029700 26299276-26300193 Antisense lncRNA 296 56.75676 2
Osa01LNT0459900.1 1 Osa01LNG0459900 26331660-26331933 intergenetic lncRNA (lincRNA) 274 25.91241 1
Osa01LNT0460000.1 1 Osa01LNG0460000 26331660-26331933 intergenetic lncRNA (lincRNA) 274 25.91241 1
Osa01LNT0029800.1 1 Osa01LNG0029800 26429326-26430002 Antisense lncRNA 477 48.84696 2
Osa01LNT0029900.2 1 Osa01LNG0029900 26522833-26527298 long non-coding(lnc) isoforms of known genes 1964 43.07536 10
Osa01LNT0029900.1 1 Osa01LNG0029900 26522833-26527298 long non-coding(lnc) isoforms of known genes 1898 43.20337 10
Osa01LNT0030000.1 1 Osa01LNG0030000 26602824-26603148 Antisense lncRNA 280 49.28571 2
Osa01LNT0030100.1 1 Osa01LNG0030100 26688448-26688701 intergenetic lncRNA (lincRNA) 254 65.74803 1
Osa01LNT0030200.1 1 Osa01LNG0030200 26699254-26705973 sense lncRNA 4953 40.33919 4
Osa01LNT0460100.1 1 Osa01LNG0460100 26758491-26758701 intergenetic lncRNA (lincRNA) 211 63.03318 1
Osa01LNT0030300.1 1 Osa01LNG0030300 26803961-26804182 intronic lncRNA 222 39.18919 1
Osa01LNT0030400.1 1 Osa01LNG0030400 26803961-26804182 intronic lncRNA 222 39.18919 1
Osa01LNT0003000.1 1 Osa01LNG0003000 2681033-2686370 long non-coding(lnc) isoforms of known genes 4713 42.47825 6
Osa01LNT0030500.1 1 Osa01LNG0030500 26888462-26895751 long non-coding(lnc) isoforms of known genes 2196 48.54281 12
Osa01LNT0460200.1 1 Osa01LNG0460200 26919988-26920244 intergenetic lncRNA (lincRNA) 257 28.01556 1
Osa01LNT0003100.1 1 Osa01LNG0003100 2699128-2704566 long non-coding(lnc) isoforms of known genes 2732 42.56955 5
Osa01LNT0030600.1 1 Osa01LNG0030600 27061369-27066443 Antisense lncRNA 848 51.88679 3
Osa01LNT0030700.1 1 Osa01LNG0030700 27102188-27110002 long non-coding(lnc) isoforms of known genes 3023 49.95038 10
Osa01LNT0030800.1 1 Osa01LNG0030800 27162751-27163403 intergenetic lncRNA (lincRNA) 653 59.87749 1
Osa01LNT0030900.2 1 Osa01LNG0030900 27196142-27199216 sense lncRNA 1945 59.69152 3
Osa01LNT0030900.1 1 Osa01LNG0030900 27196142-27199216 sense lncRNA 2921 54.1253 2
Osa01LNT0031000.1 1 Osa01LNG0031000 27242857-27246045 long non-coding(lnc) isoforms of known genes 1525 52.78689 4
Osa01LNT0031100.1 1 Osa01LNG0031100 27266617-27268067 sense lncRNA 1041 44.76465 2
Osa01LNT0031200.1 1 Osa01LNG0031200 27267084-27268467 Antisense lncRNA 411 59.61071 4
Osa01LNT0031400.1 1 Osa01LNG0031400 27303264-27312183 long non-coding(lnc) isoforms of known genes 2113 45.05442 7