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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0209000.1 3 Osa03LNG0209000 10551935-10556107 long non-coding(lnc) isoforms of known genes 2248 47.64235 10
Osa03LNT0208900.1 3 Osa03LNG0208900 10567268-10567968 intergenetic lncRNA (lincRNA) 701 53.35235 1
Osa03LNT0209100.1 3 Osa03LNG0209100 10575398-10576700 long non-coding(lnc) isoforms of known genes 1125 56.0 2
Osa03LNT0209200.1 3 Osa03LNG0209200 10605340-10605917 intergenetic lncRNA (lincRNA) 578 61.24567 1
Osa03LNT0209300.1 3 Osa03LNG0209300 10866500-10884282 long non-coding(lnc) isoforms of known genes 5821 44.08177 22
Osa03LNT0209500.1 3 Osa03LNG0209500 10992876-10996014 long non-coding(lnc) isoforms of known genes 2207 43.58858 5
Osa03LNT0209400.1 3 Osa03LNG0209400 10998989-11006469 long non-coding(lnc) isoforms of known genes 3310 46.19335 9
Osa03LNT0192700.1 3 Osa03LNG0192700 110501-114449 long non-coding(lnc) isoforms of known genes 2496 51.24199 10
Osa03LNT0209600.1 3 Osa03LNG0209600 11174233-11178013 long non-coding(lnc) isoforms of known genes 807 42.37918 3
Osa03LNT0209700.1 3 Osa03LNG0209700 11242262-11247475 long non-coding(lnc) isoforms of known genes 2162 43.29325 15
Osa03LNT0209800.1 3 Osa03LNG0209800 11312392-11313291 intergenetic lncRNA (lincRNA) 900 41.88889 1
Osa03LNT0209900.1 3 Osa03LNG0209900 11314155-11315746 intergenetic lncRNA (lincRNA) 1419 51.79704 2
Osa03LNT0210000.1 3 Osa03LNG0210000 11434789-11435532 intergenetic lncRNA (lincRNA) 744 59.27419 1
Osa03LNT0210100.1 3 Osa03LNG0210100 11476096-11481187 long non-coding(lnc) isoforms of known genes 1701 48.97119 10
Osa03LNT0210200.2 3 Osa03LNG0210200 11526273-11531969 long non-coding(lnc) isoforms of known genes 1768 44.40045 16
Osa03LNT0210200.1 3 Osa03LNG0210200 11526273-11531969 long non-coding(lnc) isoforms of known genes 1843 45.25231 15
Osa03LNT0210300.1 3 Osa03LNG0210300 11549564-11558204 long non-coding(lnc) isoforms of known genes 2467 44.6291 18
Osa03LNT0210400.1 3 Osa03LNG0210400 11621927-11627874 long non-coding(lnc) isoforms of known genes 1572 44.2112 13
Osa03LNT0210500.1 3 Osa03LNG0210500 11629451-11635559 long non-coding(lnc) isoforms of known genes 3800 41.34211 5
Osa03LNT0210600.1 3 Osa03LNG0210600 11660118-11664276 sense lncRNA 3124 41.10115 4
Osa03LNT0210700.1 3 Osa03LNG0210700 11768442-11768672 intergenetic lncRNA (lincRNA) 231 26.40693 1
Osa03LNT0210800.1 3 Osa03LNG0210800 11836594-11841914 long non-coding(lnc) isoforms of known genes 865 50.52023 5
Osa03LNT0210900.1 3 Osa03LNG0210900 11883831-11886156 long non-coding(lnc) isoforms of known genes 1992 43.5743 5
Osa03LNT0211000.1 3 Osa03LNG0211000 11919332-11921389 long non-coding(lnc) isoforms of known genes 1244 57.15434 4
Osa03LNT0211100.1 3 Osa03LNG0211100 11924507-11929717 long non-coding(lnc) isoforms of known genes 2202 46.68483 12
Osa03LNT0211200.1 3 Osa03LNG0211200 11945085-11945833 intergenetic lncRNA (lincRNA) 749 63.95194 1
Osa03LNT0211300.1 3 Osa03LNG0211300 11958034-11959061 Antisense lncRNA 412 55.58252 2
Osa03LNT0211400.1 3 Osa03LNG0211400 11973989-11976381 long non-coding(lnc) isoforms of known genes 1876 57.08955 2
Osa03LNT0211500.2 3 Osa03LNG0211500 12008226-12012504 long non-coding(lnc) isoforms of known genes 2068 46.7118 9
Osa03LNT0211500.1 3 Osa03LNG0211500 12008226-12012504 long non-coding(lnc) isoforms of known genes 2148 46.36872 8
Osa03LNT0211600.1 3 Osa03LNG0211600 12021878-12027329 long non-coding(lnc) isoforms of known genes 2123 55.91145 9
Osa03LNT0211800.1 3 Osa03LNG0211800 12153155-12156730 long non-coding(lnc) isoforms of known genes 2669 42.82503 7
Osa03LNT0211700.1 3 Osa03LNG0211700 12184392-12184823 intergenetic lncRNA (lincRNA) 432 58.7963 1
Osa03LNT0211900.1 3 Osa03LNG0211900 12246559-12248235 intronic lncRNA 1677 40.66786 1
Osa03LNT0212000.1 3 Osa03LNG0212000 12276231-12280143 long non-coding(lnc) isoforms of known genes 1392 48.7069 7
Osa03LNT0212100.1 3 Osa03LNG0212100 12291929-12296841 long non-coding(lnc) isoforms of known genes 2223 44.53441 8
Osa03LNT0212100.2 3 Osa03LNG0212100 12291929-12296841 long non-coding(lnc) isoforms of known genes 2231 44.59883 8
Osa03LNT0192800.1 3 Osa03LNG0192800 123104-132708 long non-coding(lnc) isoforms of known genes 4896 47.0384 18
Osa03LNT0212200.1 3 Osa03LNG0212200 12334725-12337463 long non-coding(lnc) isoforms of known genes 1780 54.77528 4
Osa03LNT0194500.1 3 Osa03LNG0194500 1235460-1244930 long non-coding(lnc) isoforms of known genes 2423 47.25547 2
Osa03LNT0212300.1 3 Osa03LNG0212300 12366088-12367462 intergenetic lncRNA (lincRNA) 1375 42.25455 1
Osa03LNT0212300.2 3 Osa03LNG0212300 12366088-12367462 intergenetic lncRNA (lincRNA) 752 45.21277 2
Osa03LNT0212400.2 3 Osa03LNG0212400 12421446-12432686 long non-coding(lnc) isoforms of known genes 3908 43.65404 23
Osa03LNT0212400.1 3 Osa03LNG0212400 12421446-12432686 long non-coding(lnc) isoforms of known genes 3834 44.13146 24
Osa03LNT0212500.1 3 Osa03LNG0212500 12516533-12519973 long non-coding(lnc) isoforms of known genes 2490 46.18474 4
Osa03LNT0464800.1 3 Osa03LNG0464800 12574149-12574392 intergenetic lncRNA (lincRNA) 244 24.18033 1
Osa03LNT0464900.1 3 Osa03LNG0464900 12574149-12574392 intergenetic lncRNA (lincRNA) 244 24.18033 1
Osa03LNT0465000.1 3 Osa03LNG0465000 12574459-12574732 intergenetic lncRNA (lincRNA) 274 25.91241 1
Osa03LNT0465100.1 3 Osa03LNG0465100 12574459-12574732 intergenetic lncRNA (lincRNA) 274 25.91241 1
Osa03LNT0212600.2 3 Osa03LNG0212600 12591672-12595636 long non-coding(lnc) isoforms of known genes 2783 44.7359 6
Osa03LNT0212600.1 3 Osa03LNG0212600 12591672-12595636 long non-coding(lnc) isoforms of known genes 2834 44.74241 6
Osa03LNT0212700.1 3 Osa03LNG0212700 12607028-12608268 Antisense lncRNA 208 47.11538 2
Osa03LNT0212800.1 3 Osa03LNG0212800 12630732-12635182 long non-coding(lnc) isoforms of known genes 2778 38.91289 3
Osa03LNT0212900.1 3 Osa03LNG0212900 12643087-12646793 long non-coding(lnc) isoforms of known genes 1627 47.38783 5
Osa03LNT0213000.1 3 Osa03LNG0213000 12676559-12677250 long non-coding(lnc) isoforms of known genes 612 39.54248 2
Osa03LNT0213000.2 3 Osa03LNG0213000 12676559-12677250 long non-coding(lnc) isoforms of known genes 806 42.05955 3
Osa03LNT0213100.1 3 Osa03LNG0213100 12718958-12723993 sense lncRNA 3496 42.3341 13
Osa03LNT0465300.1 3 Osa03LNG0465300 12744327-12744568 intergenetic lncRNA (lincRNA) 242 25.61983 1
Osa03LNT0465200.1 3 Osa03LNG0465200 12744327-12744568 intergenetic lncRNA (lincRNA) 242 25.61983 1
Osa03LNT0213200.1 3 Osa03LNG0213200 12757907-12759336 sense lncRNA 1084 47.32472 2
Osa03LNT0465400.1 3 Osa03LNG0465400 12763588-12763806 intergenetic lncRNA (lincRNA) 219 28.76712 1
Osa03LNT0465500.1 3 Osa03LNG0465500 12763588-12763808 intergenetic lncRNA (lincRNA) 221 28.50679 1
Osa03LNT0213300.1 3 Osa03LNG0213300 12823982-12828217 long non-coding(lnc) isoforms of known genes 2946 42.56619 7
Osa03LNT0213400.1 3 Osa03LNG0213400 12854093-12859389 long non-coding(lnc) isoforms of known genes 1734 50.86505 10
Osa03LNT0213700.1 3 Osa03LNG0213700 12865134-12869259 long non-coding(lnc) isoforms of known genes 1724 53.7703 9
Osa03LNT0213500.1 3 Osa03LNG0213500 12872507-12872916 intronic lncRNA 410 29.7561 1
Osa03LNT0213600.1 3 Osa03LNG0213600 12907225-12907755 Antisense lncRNA 323 64.08669 3
Osa03LNT0465600.1 3 Osa03LNG0465600 12932400-12932661 intergenetic lncRNA (lincRNA) 262 40.45802 1
Osa03LNT0213800.1 3 Osa03LNG0213800 12961404-12966715 long non-coding(lnc) isoforms of known genes 3148 45.93393 3
Osa03LNT0213900.1 3 Osa03LNG0213900 12988940-13002101 long non-coding(lnc) isoforms of known genes 5668 43.52505 13
Osa03LNT0214100.1 3 Osa03LNG0214100 13035377-13046109 long non-coding(lnc) isoforms of known genes 1841 43.83487 7
Osa03LNT0214300.1 3 Osa03LNG0214300 13041492-13041766 intronic lncRNA 275 25.81818 1
Osa03LNT0214200.1 3 Osa03LNG0214200 13041492-13041766 intronic lncRNA 275 25.81818 1
Osa03LNT0214000.1 3 Osa03LNG0214000 13081379-13082938 intergenetic lncRNA (lincRNA) 1560 38.78205 1
Osa03LNT0214400.1 3 Osa03LNG0214400 13087404-13093730 long non-coding(lnc) isoforms of known genes 4370 36.86499 9
Osa03LNT0214500.1 3 Osa03LNG0214500 13164585-13168320 long non-coding(lnc) isoforms of known genes 1515 49.24092 6
Osa03LNT0214600.1 3 Osa03LNG0214600 13168389-13169351 intergenetic lncRNA (lincRNA) 843 51.4828 2
Osa03LNT0214700.1 3 Osa03LNG0214700 13222651-13225466 long non-coding(lnc) isoforms of known genes 1943 50.64334 7
Osa03LNT0214800.1 3 Osa03LNG0214800 13575062-13577311 sense lncRNA 1757 58.22425 2
Osa03LNT0214900.1 3 Osa03LNG0214900 13608690-13612216 sense lncRNA 1865 51.58177 10
Osa03LNT0215100.1 3 Osa03LNG0215100 13727309-13738946 long non-coding(lnc) isoforms of known genes 3396 48.20377 22
Osa03LNT0215000.1 3 Osa03LNG0215000 13743580-13748142 long non-coding(lnc) isoforms of known genes 2009 46.98855 4
Osa03LNT0215200.1 3 Osa03LNG0215200 13807798-13808670 intergenetic lncRNA (lincRNA) 873 48.22451 1
Osa03LNT0215300.1 3 Osa03LNG0215300 13841106-13860857 long non-coding(lnc) isoforms of known genes 5277 45.99204 12
Osa03LNT0215400.1 3 Osa03LNG0215400 13941461-13948782 long non-coding(lnc) isoforms of known genes 1997 46.11918 19
Osa03LNT0194600.1 3 Osa03LNG0194600 1415086-1416587 intergenetic lncRNA (lincRNA) 920 42.17391 4
Osa03LNT0215500.1 3 Osa03LNG0215500 14153895-14158751 long non-coding(lnc) isoforms of known genes 1486 44.68371 17
Osa03LNT0215600.1 3 Osa03LNG0215600 14188272-14192414 long non-coding(lnc) isoforms of known genes 1821 40.9665 7
Osa03LNT0215700.2 3 Osa03LNG0215700 14213209-14220638 long non-coding(lnc) isoforms of known genes 2135 46.65105 13
Osa03LNT0215700.1 3 Osa03LNG0215700 14213209-14220638 long non-coding(lnc) isoforms of known genes 2119 46.76734 13
Osa03LNT0192900.1 3 Osa03LNG0192900 143838-144403 long non-coding(lnc) isoforms of known genes 463 55.07559 2
Osa03LNT0215800.3 3 Osa03LNG0215800 14556071-14562778 Antisense lncRNA 623 57.94543 4
Osa03LNT0215800.2 3 Osa03LNG0215800 14556071-14562778 Antisense lncRNA 964 50.3112 3
Osa03LNT0215800.1 3 Osa03LNG0215800 14556071-14562778 Antisense lncRNA 631 57.84469 4
Osa03LNT0216000.2 3 Osa03LNG0216000 14751379-14754898 long non-coding(lnc) isoforms of known genes 1783 43.63432 5
Osa03LNT0216000.1 3 Osa03LNG0216000 14751379-14754898 long non-coding(lnc) isoforms of known genes 1329 46.87735 7
Osa03LNT0215900.1 3 Osa03LNG0215900 14762732-14763333 intronic lncRNA 602 27.24252 1
Osa03LNT0216200.1 3 Osa03LNG0216200 14850286-14853783 long non-coding(lnc) isoforms of known genes 1857 46.74206 11
Osa03LNT0216100.1 3 Osa03LNG0216100 14854292-14854567 intergenetic lncRNA (lincRNA) 276 76.44928 1
Osa03LNT0216300.1 3 Osa03LNG0216300 14925199-14930386 long non-coding(lnc) isoforms of known genes 3304 53.35956 9