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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0216400.1 3 Osa03LNG0216400 15131859-15132882 intergenetic lncRNA (lincRNA) 1024 59.76562 1
Osa03LNT0465800.1 3 Osa03LNG0465800 15133390-15133663 intergenetic lncRNA (lincRNA) 274 26.64234 1
Osa03LNT0465700.1 3 Osa03LNG0465700 15133390-15133663 intergenetic lncRNA (lincRNA) 274 26.64234 1
Osa03LNT0194800.2 3 Osa03LNG0194800 1515167-1518909 long non-coding(lnc) isoforms of known genes 1429 44.29671 14
Osa03LNT0194800.1 3 Osa03LNG0194800 1515167-1518909 long non-coding(lnc) isoforms of known genes 1351 44.55959 14
Osa03LNT0465900.1 3 Osa03LNG0465900 15159219-15159493 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa03LNT0466000.1 3 Osa03LNG0466000 15159219-15159493 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa03LNT0216500.1 3 Osa03LNG0216500 15214303-15219070 long non-coding(lnc) isoforms of known genes 2838 47.35729 7
Osa03LNT0194700.1 3 Osa03LNG0194700 1525222-1527076 long non-coding(lnc) isoforms of known genes 555 46.30631 3
Osa03LNT0466100.1 3 Osa03LNG0466100 15288587-15288830 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa03LNT0466200.1 3 Osa03LNG0466200 15288587-15288830 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa03LNT0466300.1 3 Osa03LNG0466300 15288897-15289172 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0466400.1 3 Osa03LNG0466400 15288897-15289172 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0216600.1 3 Osa03LNG0216600 15453264-15457559 long non-coding(lnc) isoforms of known genes 1708 47.01405 3
Osa03LNT0216700.1 3 Osa03LNG0216700 15479890-15481667 long non-coding(lnc) isoforms of known genes 1516 38.91821 2
Osa03LNT0216800.1 3 Osa03LNG0216800 15658869-15661383 long non-coding(lnc) isoforms of known genes 1402 51.42653 7
Osa03LNT0194900.1 3 Osa03LNG0194900 1567984-1575496 long non-coding(lnc) isoforms of known genes 2480 46.89516 20
Osa03LNT0216900.1 3 Osa03LNG0216900 15685589-15689226 long non-coding(lnc) isoforms of known genes 2695 49.12801 4
Osa03LNT0217000.1 3 Osa03LNG0217000 15752795-15756106 sense lncRNA 1813 59.95587 2
Osa03LNT0195100.1 3 Osa03LNG0195100 1582178-1596130 long non-coding(lnc) isoforms of known genes 5457 40.55342 33
Osa03LNT0217100.1 3 Osa03LNG0217100 15967010-15969934 long non-coding(lnc) isoforms of known genes 794 36.27204 3
Osa03LNT0217200.2 3 Osa03LNG0217200 15968994-15970303 sense lncRNA 1094 62.88848 3
Osa03LNT0217200.1 3 Osa03LNG0217200 15968994-15970303 sense lncRNA 1204 61.37874 2
Osa03LNT0217300.2 3 Osa03LNG0217300 15969985-15970549 Antisense lncRNA 288 43.05556 3
Osa03LNT0217300.1 3 Osa03LNG0217300 15969985-15970549 Antisense lncRNA 481 39.29314 2
Osa03LNT0217400.1 3 Osa03LNG0217400 16024525-16026141 sense lncRNA 1177 59.21835 3
Osa03LNT0217400.2 3 Osa03LNG0217400 16024525-16026141 sense lncRNA 1168 59.33219 3
Osa03LNT0217600.1 3 Osa03LNG0217600 16072911-16078822 long non-coding(lnc) isoforms of known genes 2659 46.97255 16
Osa03LNT0217500.1 3 Osa03LNG0217500 16089258-16089669 intergenetic lncRNA (lincRNA) 412 56.31068 1
Osa03LNT0217700.1 3 Osa03LNG0217700 16163346-16164343 intergenetic lncRNA (lincRNA) 998 49.1984 1
Osa03LNT0466500.1 3 Osa03LNG0466500 16237791-16238043 intergenetic lncRNA (lincRNA) 253 52.96443 1
Osa03LNT0195000.1 3 Osa03LNG0195000 1630123-1631834 long non-coding(lnc) isoforms of known genes 1442 62.69071 4
Osa03LNT0217900.1 3 Osa03LNG0217900 16301377-16307632 long non-coding(lnc) isoforms of known genes 2907 51.73719 15
Osa03LNT0217800.1 3 Osa03LNG0217800 16372217-16378567 intergenetic lncRNA (lincRNA) 1753 44.38106 13
Osa03LNT0218000.1 3 Osa03LNG0218000 16383596-16386794 long non-coding(lnc) isoforms of known genes 1539 48.79792 5
Osa03LNT0195200.1 3 Osa03LNG0195200 1653183-1661566 long non-coding(lnc) isoforms of known genes 3242 45.52745 24
Osa03LNT0195300.1 3 Osa03LNG0195300 1667909-1673176 long non-coding(lnc) isoforms of known genes 1470 65.30612 5
Osa03LNT0218200.1 3 Osa03LNG0218200 16696253-16700803 long non-coding(lnc) isoforms of known genes 2907 38.56209 4
Osa03LNT0218200.3 3 Osa03LNG0218200 16696253-16700803 long non-coding(lnc) isoforms of known genes 2096 47.56679 3
Osa03LNT0218200.2 3 Osa03LNG0218200 16696253-16700803 long non-coding(lnc) isoforms of known genes 2556 39.78873 5
Osa03LNT0218300.1 3 Osa03LNG0218300 16696295-16700996 long non-coding(lnc) isoforms of known genes 1342 45.08197 9
Osa03LNT0466600.1 3 Osa03LNG0466600 16768709-16769004 intergenetic lncRNA (lincRNA) 296 23.31081 1
Osa03LNT0466700.1 3 Osa03LNG0466700 16768709-16769004 intergenetic lncRNA (lincRNA) 296 23.31081 1
Osa03LNT0218100.1 3 Osa03LNG0218100 16789620-16790813 intergenetic lncRNA (lincRNA) 764 40.31414 2
Osa03LNT0218500.1 3 Osa03LNG0218500 16937595-16940915 long non-coding(lnc) isoforms of known genes 1245 52.04819 9
Osa03LNT0218400.1 3 Osa03LNG0218400 16977997-16978309 intergenetic lncRNA (lincRNA) 313 39.29712 1
Osa03LNT0466800.1 3 Osa03LNG0466800 17146541-17146749 intergenetic lncRNA (lincRNA) 209 49.2823 1
Osa03LNT0218600.1 3 Osa03LNG0218600 17207401-17211110 long non-coding(lnc) isoforms of known genes 2157 45.85072 10
Osa03LNT0466900.1 3 Osa03LNG0466900 17284306-17284519 intergenetic lncRNA (lincRNA) 214 57.00935 1
Osa03LNT0218700.1 3 Osa03LNG0218700 17288187-17292842 long non-coding(lnc) isoforms of known genes 2574 42.30769 4
Osa03LNT0467000.1 3 Osa03LNG0467000 17323102-17323375 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa03LNT0467100.1 3 Osa03LNG0467100 17323102-17323375 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa03LNT0195400.2 3 Osa03LNG0195400 1737377-1748477 long non-coding(lnc) isoforms of known genes 2891 43.54895 6
Osa03LNT0195400.1 3 Osa03LNG0195400 1737377-1748477 long non-coding(lnc) isoforms of known genes 4099 57.77019 12
Osa03LNT0218800.1 3 Osa03LNG0218800 17410000-17412951 long non-coding(lnc) isoforms of known genes 1610 49.37888 3
Osa03LNT0218800.2 3 Osa03LNG0218800 17410000-17412951 long non-coding(lnc) isoforms of known genes 1167 56.81234 4
Osa03LNT0218900.1 3 Osa03LNG0218900 17515060-17521880 long non-coding(lnc) isoforms of known genes 2778 41.07271 9
Osa03LNT0219000.3 3 Osa03LNG0219000 17616255-17622330 sense lncRNA 1644 53.71046 7
Osa03LNT0219000.2 3 Osa03LNG0219000 17616255-17622330 sense lncRNA 1515 50.62706 7
Osa03LNT0219000.1 3 Osa03LNG0219000 17616255-17622330 sense lncRNA 1684 53.56295 7
Osa03LNT0219100.1 3 Osa03LNG0219100 17719246-17723059 long non-coding(lnc) isoforms of known genes 3149 41.72753 3
Osa03LNT0219200.1 3 Osa03LNG0219200 17745407-17748460 long non-coding(lnc) isoforms of known genes 1604 48.69077 8
Osa03LNT0195500.1 3 Osa03LNG0195500 1776356-1780897 long non-coding(lnc) isoforms of known genes 3984 49.42269 4
Osa03LNT0219300.1 3 Osa03LNG0219300 17809791-17810736 sense lncRNA 876 60.04566 2
Osa03LNT0219400.1 3 Osa03LNG0219400 17850708-17853697 long non-coding(lnc) isoforms of known genes 1257 49.88067 2
Osa03LNT0219500.1 3 Osa03LNG0219500 17873187-17878013 intergenetic lncRNA (lincRNA) 2093 45.8194 3
Osa03LNT0219600.2 3 Osa03LNG0219600 17902702-17912534 long non-coding(lnc) isoforms of known genes 2180 38.66972 6
Osa03LNT0219600.1 3 Osa03LNG0219600 17902702-17912534 long non-coding(lnc) isoforms of known genes 2184 39.01099 6
Osa03LNT0219800.1 3 Osa03LNG0219800 18087305-18093804 long non-coding(lnc) isoforms of known genes 1907 45.09701 10
Osa03LNT0219800.2 3 Osa03LNG0219800 18087305-18093804 long non-coding(lnc) isoforms of known genes 1803 45.92346 11
Osa03LNT0219700.1 3 Osa03LNG0219700 18110451-18112570 long non-coding(lnc) isoforms of known genes 1499 48.29887 4
Osa03LNT0220100.1 3 Osa03LNG0220100 18125838-18126114 intergenetic lncRNA (lincRNA) 277 28.88087 1
Osa03LNT0220200.1 3 Osa03LNG0220200 18125838-18126114 intergenetic lncRNA (lincRNA) 277 28.88087 1
Osa03LNT0219900.1 3 Osa03LNG0219900 18153163-18159070 long non-coding(lnc) isoforms of known genes 2696 47.29228 17
Osa03LNT0220000.1 3 Osa03LNG0220000 18169349-18171765 sense lncRNA 1653 49.1833 5
Osa03LNT0193000.1 3 Osa03LNG0193000 182695-186237 long non-coding(lnc) isoforms of known genes 1482 44.80432 2
Osa03LNT0467200.1 3 Osa03LNG0467200 18665703-18665927 intergenetic lncRNA (lincRNA) 225 39.11111 1
Osa03LNT0220300.1 3 Osa03LNG0220300 18692209-18693697 long non-coding(lnc) isoforms of known genes 454 51.10132 3
Osa03LNT0467300.1 3 Osa03LNG0467300 19168947-19169200 intergenetic lncRNA (lincRNA) 254 30.70866 1
Osa03LNT0220400.1 3 Osa03LNG0220400 19393138-19393343 intergenetic lncRNA (lincRNA) 206 41.74757 1
Osa03LNT0220500.1 3 Osa03LNG0220500 19484949-19485308 intergenetic lncRNA (lincRNA) 360 33.05556 1
Osa03LNT0195600.1 3 Osa03LNG0195600 1956873-1959760 long non-coding(lnc) isoforms of known genes 2389 49.30933 3
Osa03LNT0220600.2 3 Osa03LNG0220600 19585516-19588337 long non-coding(lnc) isoforms of known genes 2504 44.76837 4
Osa03LNT0220600.1 3 Osa03LNG0220600 19585516-19588337 long non-coding(lnc) isoforms of known genes 2469 44.83597 4
Osa03LNT0220700.1 3 Osa03LNG0220700 19715826-19717599 long non-coding(lnc) isoforms of known genes 1464 42.34973 2
Osa03LNT0220800.1 3 Osa03LNG0220800 19864814-19867225 intergenetic lncRNA (lincRNA) 2235 40.80537 2
Osa03LNT0220800.2 3 Osa03LNG0220800 19864814-19867225 intergenetic lncRNA (lincRNA) 2294 40.93287 2
Osa03LNT0220900.1 3 Osa03LNG0220900 20030334-20033707 long non-coding(lnc) isoforms of known genes 1680 43.86905 9
Osa03LNT0221000.1 3 Osa03LNG0221000 20188198-20216279 long non-coding(lnc) isoforms of known genes 934 44.32548 2
Osa03LNT0467400.1 3 Osa03LNG0467400 20267748-20268005 intronic lncRNA 258 41.08527 1
Osa03LNT0192600.2 3 Osa03LNG0192600 20294-23572 long non-coding(lnc) isoforms of known genes 1598 49.74969 9
Osa03LNT0192600.1 3 Osa03LNG0192600 20294-23572 long non-coding(lnc) isoforms of known genes 1293 51.50812 9
Osa03LNT0221100.2 3 Osa03LNG0221100 20420795-20426307 long non-coding(lnc) isoforms of known genes 2493 42.51905 11
Osa03LNT0221100.1 3 Osa03LNG0221100 20420795-20426307 long non-coding(lnc) isoforms of known genes 1320 47.12121 11
Osa03LNT0221200.1 3 Osa03LNG0221200 20558776-20561694 long non-coding(lnc) isoforms of known genes 2782 42.27175 2
Osa03LNT0221300.1 3 Osa03LNG0221300 20677695-20692541 long non-coding(lnc) isoforms of known genes 4652 44.77644 11
Osa03LNT0221400.1 3 Osa03LNG0221400 20745560-20746036 intronic lncRNA 477 33.96226 1
Osa03LNT0221500.1 3 Osa03LNG0221500 20842186-20846882 long non-coding(lnc) isoforms of known genes 1447 48.65238 8
Osa03LNT0467500.1 3 Osa03LNG0467500 20922699-20922973 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa03LNT0467600.1 3 Osa03LNG0467600 20922699-20922973 intergenetic lncRNA (lincRNA) 275 26.54545 1