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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0221600.2 3 Osa03LNG0221600 20923579-20925443 long non-coding(lnc) isoforms of known genes 947 55.12144 3
Osa03LNT0221600.1 3 Osa03LNG0221600 20923579-20925443 sense lncRNA 1149 53.69887 2
Osa03LNT0467700.1 3 Osa03LNG0467700 20930479-20930752 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa03LNT0467800.1 3 Osa03LNG0467800 20930479-20930752 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa03LNT0468000.1 3 Osa03LNG0468000 20995224-20995496 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa03LNT0467900.1 3 Osa03LNG0467900 20995224-20995496 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa03LNT0221700.1 3 Osa03LNG0221700 21030465-21031139 sense lncRNA 430 53.02326 2
Osa03LNT0195700.1 3 Osa03LNG0195700 2103211-2112148 long non-coding(lnc) isoforms of known genes 3603 45.29559 10
Osa03LNT0195700.2 3 Osa03LNG0195700 2103211-2112148 long non-coding(lnc) isoforms of known genes 5340 41.79775 10
Osa03LNT0468100.1 3 Osa03LNG0468100 21035627-21035903 intergenetic lncRNA (lincRNA) 277 29.24188 1
Osa03LNT0468200.1 3 Osa03LNG0468200 21035970-21036213 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa03LNT0221800.1 3 Osa03LNG0221800 21055770-21056709 intergenetic lncRNA (lincRNA) 559 43.82826 2
Osa03LNT0468300.1 3 Osa03LNG0468300 21195087-21195363 intergenetic lncRNA (lincRNA) 277 29.24188 1
Osa03LNT0468400.1 3 Osa03LNG0468400 21195094-21195356 intergenetic lncRNA (lincRNA) 263 27.75665 1
Osa03LNT0195800.1 3 Osa03LNG0195800 2125787-2129505 long non-coding(lnc) isoforms of known genes 3392 66.86321 5
Osa03LNT0222000.1 3 Osa03LNG0222000 21275422-21282111 sense lncRNA 1391 61.39468 4
Osa03LNT0221900.1 3 Osa03LNG0221900 21288284-21289060 intergenetic lncRNA (lincRNA) 777 54.69755 1
Osa03LNT0195900.1 3 Osa03LNG0195900 2145884-2150519 long non-coding(lnc) isoforms of known genes 4330 44.96536 3
Osa03LNT0222200.1 3 Osa03LNG0222200 21500980-21515440 long non-coding(lnc) isoforms of known genes 4607 44.8448 20
Osa03LNT0222100.1 3 Osa03LNG0222100 21518965-21522077 long non-coding(lnc) isoforms of known genes 2734 51.79225 2
Osa03LNT0196000.1 3 Osa03LNG0196000 2159337-2161733 long non-coding(lnc) isoforms of known genes 1643 44.49178 6
Osa03LNT0222300.1 3 Osa03LNG0222300 21622958-21628739 long non-coding(lnc) isoforms of known genes 2373 50.5689 10
Osa03LNT0222400.1 3 Osa03LNG0222400 21631071-21634021 long non-coding(lnc) isoforms of known genes 1591 54.43118 5
Osa03LNT0222500.1 3 Osa03LNG0222500 21864864-21867136 intergenetic lncRNA (lincRNA) 1617 47.68089 3
Osa03LNT0222600.1 3 Osa03LNG0222600 21947068-21949589 sense lncRNA 1643 49.9087 2
Osa03LNT0222700.1 3 Osa03LNG0222700 22107367-22107860 intergenetic lncRNA (lincRNA) 494 45.34413 1
Osa03LNT0222800.1 3 Osa03LNG0222800 22184257-22201184 long non-coding(lnc) isoforms of known genes 2043 43.61233 7
Osa03LNT0196100.1 3 Osa03LNG0196100 2225971-2228466 long non-coding(lnc) isoforms of known genes 1367 58.81492 3
Osa03LNT0222900.2 3 Osa03LNG0222900 22285710-22292612 long non-coding(lnc) isoforms of known genes 3393 43.02977 14
Osa03LNT0222900.1 3 Osa03LNG0222900 22285710-22292612 long non-coding(lnc) isoforms of known genes 3255 43.5023 15
Osa03LNT0223000.1 3 Osa03LNG0223000 22347751-22354870 sense lncRNA 3129 44.71077 3
Osa03LNT0223100.1 3 Osa03LNG0223100 22451553-22453961 long non-coding(lnc) isoforms of known genes 1840 51.19565 2
Osa03LNT0468500.1 3 Osa03LNG0468500 22466955-22467222 intronic lncRNA 268 38.80597 1
Osa03LNT0468700.1 3 Osa03LNG0468700 22467591-22467864 intronic lncRNA 274 24.08759 1
Osa03LNT0468600.1 3 Osa03LNG0468600 22467591-22467864 intronic lncRNA 274 24.08759 1
Osa03LNT0223200.1 3 Osa03LNG0223200 22603735-22604186 intergenetic lncRNA (lincRNA) 452 64.82301 1
Osa03LNT0468800.1 3 Osa03LNG0468800 22605397-22605606 intergenetic lncRNA (lincRNA) 210 37.61905 1
Osa03LNT0223400.1 3 Osa03LNG0223400 22670445-22671437 intergenetic lncRNA (lincRNA) 885 42.59887 2
Osa03LNT0223300.1 3 Osa03LNG0223300 22681735-22682442 intergenetic lncRNA (lincRNA) 342 40.05848 2
Osa03LNT0223600.1 3 Osa03LNG0223600 22714345-22718489 intergenetic lncRNA (lincRNA) 849 56.41932 5
Osa03LNT0223500.1 3 Osa03LNG0223500 22735231-22736111 intergenetic lncRNA (lincRNA) 881 53.23496 1
Osa03LNT0223700.1 3 Osa03LNG0223700 22873785-22877019 intergenetic lncRNA (lincRNA) 3235 41.26739 1
Osa03LNT0223700.2 3 Osa03LNG0223700 22873785-22877019 intergenetic lncRNA (lincRNA) 1139 43.54697 2
Osa03LNT0223800.1 3 Osa03LNG0223800 22911337-22918503 long non-coding(lnc) isoforms of known genes 1321 44.66313 4
Osa03LNT0223900.1 3 Osa03LNG0223900 22973914-22974158 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa03LNT0224000.1 3 Osa03LNG0224000 22974225-22974498 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa03LNT0224100.1 3 Osa03LNG0224100 22974225-22974498 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa03LNT0468900.1 3 Osa03LNG0468900 23019545-23019755 intergenetic lncRNA (lincRNA) 211 39.33649 1
Osa03LNT0224200.1 3 Osa03LNG0224200 23076782-23077920 sense lncRNA 520 45.19231 2
Osa03LNT0224300.1 3 Osa03LNG0224300 23093191-23096385 long non-coding(lnc) isoforms of known genes 1137 50.65963 4
Osa03LNT0224300.2 3 Osa03LNG0224300 23093191-23096385 long non-coding(lnc) isoforms of known genes 1141 50.56968 4
Osa03LNT0469000.1 3 Osa03LNG0469000 23156394-23156650 intergenetic lncRNA (lincRNA) 257 27.23735 1
Osa03LNT0224400.2 3 Osa03LNG0224400 23369001-23384101 long non-coding(lnc) isoforms of known genes 4710 42.99363 29
Osa03LNT0224400.1 3 Osa03LNG0224400 23369001-23384101 long non-coding(lnc) isoforms of known genes 4347 43.45526 29
Osa03LNT0469100.1 3 Osa03LNG0469100 23422543-23422759 intergenetic lncRNA (lincRNA) 217 37.32719 1
Osa03LNT0224500.1 3 Osa03LNG0224500 23542029-23543025 intergenetic lncRNA (lincRNA) 997 40.52156 1
Osa03LNT0224600.1 3 Osa03LNG0224600 23582094-23584121 intronic lncRNA 2028 45.46351 1
Osa03LNT0224700.2 3 Osa03LNG0224700 23623526-23630664 long non-coding(lnc) isoforms of known genes 3897 40.59533 4
Osa03LNT0224700.1 3 Osa03LNG0224700 23623526-23630664 long non-coding(lnc) isoforms of known genes 6833 39.99707 4
Osa03LNT0224800.1 3 Osa03LNG0224800 23633296-23640082 long non-coding(lnc) isoforms of known genes 690 55.7971 5
Osa03LNT0224900.1 3 Osa03LNG0224900 23789143-23793060 intergenetic lncRNA (lincRNA) 1902 43.42797 4
Osa03LNT0225000.2 3 Osa03LNG0225000 23797039-23808239 long non-coding(lnc) isoforms of known genes 2895 44.42142 25
Osa03LNT0225000.1 3 Osa03LNG0225000 23797039-23808239 long non-coding(lnc) isoforms of known genes 3329 43.28627 24
Osa03LNT0196300.1 3 Osa03LNG0196300 2380025-2384728 long non-coding(lnc) isoforms of known genes 2509 42.92547 11
Osa03LNT0196300.2 3 Osa03LNG0196300 2380025-2384728 long non-coding(lnc) isoforms of known genes 1982 43.89506 13
Osa03LNT0196200.1 3 Osa03LNG0196200 2394401-2394986 intergenetic lncRNA (lincRNA) 586 46.24573 1
Osa03LNT0196400.1 3 Osa03LNG0196400 2396768-2400551 long non-coding(lnc) isoforms of known genes 1976 44.98988 9
Osa03LNT0469200.1 3 Osa03LNG0469200 24004076-24004319 intergenetic lncRNA (lincRNA) 244 26.22951 1
Osa03LNT0469300.1 3 Osa03LNG0469300 24059001-24059257 intergenetic lncRNA (lincRNA) 257 29.57198 1
Osa03LNT0469500.1 3 Osa03LNG0469500 24153313-24153601 intergenetic lncRNA (lincRNA) 289 23.52941 1
Osa03LNT0469400.1 3 Osa03LNG0469400 24153313-24153601 intergenetic lncRNA (lincRNA) 289 23.52941 1
Osa03LNT0225100.1 3 Osa03LNG0225100 24174255-24180467 long non-coding(lnc) isoforms of known genes 2117 50.21256 7
Osa03LNT0469600.1 3 Osa03LNG0469600 24205061-24205316 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa03LNT0469700.1 3 Osa03LNG0469700 24205061-24205316 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa03LNT0225200.1 3 Osa03LNG0225200 24271558-24277899 long non-coding(lnc) isoforms of known genes 2087 60.18208 7
Osa03LNT0225300.1 3 Osa03LNG0225300 24426730-24436012 long non-coding(lnc) isoforms of known genes 5613 42.91823 6
Osa03LNT0196500.1 3 Osa03LNG0196500 2450313-2455324 long non-coding(lnc) isoforms of known genes 3481 42.68888 7
Osa03LNT0196500.2 3 Osa03LNG0196500 2450313-2455324 long non-coding(lnc) isoforms of known genes 3406 42.92425 8
Osa03LNT0196600.4 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 1432 48.25419 3
Osa03LNT0196600.3 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2134 43.11153 3
Osa03LNT0196600.2 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2231 42.71627 2
Osa03LNT0196600.1 3 Osa03LNG0196600 2459016-2462154 sense lncRNA 2400 43.45833 2
Osa03LNT0225400.1 3 Osa03LNG0225400 24630180-24634746 long non-coding(lnc) isoforms of known genes 1624 50.61576 8
Osa03LNT0225500.1 3 Osa03LNG0225500 24701195-24706912 sense lncRNA 2863 48.3409 4
Osa03LNT0225600.1 3 Osa03LNG0225600 25005911-25006115 Antisense lncRNA 205 24.87805 1
Osa03LNT0225700.1 3 Osa03LNG0225700 25008341-25010369 long non-coding(lnc) isoforms of known genes 929 52.96017 3
Osa03LNT0225800.1 3 Osa03LNG0225800 25042427-25051552 long non-coding(lnc) isoforms of known genes 4111 52.49331 21
Osa03LNT0225900.1 3 Osa03LNG0225900 25062638-25066668 long non-coding(lnc) isoforms of known genes 2006 49.8006 8
Osa03LNT0226000.1 3 Osa03LNG0226000 25073911-25074163 intronic lncRNA 253 38.73518 1
Osa03LNT0469800.1 3 Osa03LNG0469800 25088705-25088948 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa03LNT0469900.1 3 Osa03LNG0469900 25088705-25088948 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa03LNT0470100.1 3 Osa03LNG0470100 25089015-25089290 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0470000.1 3 Osa03LNG0470000 25089015-25089290 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa03LNT0470200.1 3 Osa03LNG0470200 25215923-25216166 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa03LNT0470300.1 3 Osa03LNG0470300 25216233-25216506 intergenetic lncRNA (lincRNA) 274 27.37226 1
Osa03LNT0470400.1 3 Osa03LNG0470400 25216233-25216506 intergenetic lncRNA (lincRNA) 274 27.37226 1
Osa03LNT0226100.1 3 Osa03LNG0226100 25248155-25248402 intergenetic lncRNA (lincRNA) 248 25.40323 1
Osa03LNT0226200.1 3 Osa03LNG0226200 25268199-25273008 long non-coding(lnc) isoforms of known genes 1659 44.24352 7
Osa03LNT0226300.1 3 Osa03LNG0226300 25279444-25286376 long non-coding(lnc) isoforms of known genes 1721 46.31028 13
Osa03LNT0470500.1 3 Osa03LNG0470500 25289592-25289856 intergenetic lncRNA (lincRNA) 265 26.79245 1