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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0196700.1 3 Osa03LNG0196700 2543680-2546338 long non-coding(lnc) isoforms of known genes 965 50.67358 5
Osa03LNT0226400.2 3 Osa03LNG0226400 25517644-25519926 intergenetic lncRNA (lincRNA) 1183 44.12511 9
Osa03LNT0226400.1 3 Osa03LNG0226400 25517644-25519926 intergenetic lncRNA (lincRNA) 1450 41.86207 8
Osa03LNT0226500.3 3 Osa03LNG0226500 25520279-25525325 long non-coding(lnc) isoforms of known genes 2176 43.97978 12
Osa03LNT0226500.2 3 Osa03LNG0226500 25520279-25525325 long non-coding(lnc) isoforms of known genes 1509 48.31014 13
Osa03LNT0226500.1 3 Osa03LNG0226500 25520279-25525325 long non-coding(lnc) isoforms of known genes 1558 47.8819 14
Osa03LNT0470600.1 3 Osa03LNG0470600 25611407-25611683 intergenetic lncRNA (lincRNA) 277 24.90975 1
Osa03LNT0470700.1 3 Osa03LNG0470700 25611407-25611683 intergenetic lncRNA (lincRNA) 277 24.90975 1
Osa03LNT0470900.1 3 Osa03LNG0470900 25740742-25741026 intergenetic lncRNA (lincRNA) 285 27.01754 1
Osa03LNT0470800.1 3 Osa03LNG0470800 25740742-25741026 intergenetic lncRNA (lincRNA) 285 27.01754 1
Osa03LNT0471000.1 3 Osa03LNG0471000 25902893-25903100 intergenetic lncRNA (lincRNA) 208 48.55769 1
Osa03LNT0226600.2 3 Osa03LNG0226600 26135889-26138165 intergenetic lncRNA (lincRNA) 1147 47.34089 3
Osa03LNT0226600.1 3 Osa03LNG0226600 26135889-26138165 intergenetic lncRNA (lincRNA) 1998 40.89089 2
Osa03LNT0226700.1 3 Osa03LNG0226700 26207742-26211666 long non-coding(lnc) isoforms of known genes 1980 48.33333 9
Osa03LNT0226800.1 3 Osa03LNG0226800 26249023-26251894 long non-coding(lnc) isoforms of known genes 2663 43.07172 3
Osa03LNT0226900.1 3 Osa03LNG0226900 26290118-26290327 intronic lncRNA 210 26.19048 1
Osa03LNT0227000.1 3 Osa03LNG0227000 26293298-26298494 long non-coding(lnc) isoforms of known genes 1684 49.40618 10
Osa03LNT0193200.1 3 Osa03LNG0193200 262986-265742 intergenetic lncRNA (lincRNA) 2671 37.88843 2
Osa03LNT0227100.1 3 Osa03LNG0227100 26308523-26312879 long non-coding(lnc) isoforms of known genes 632 51.42405 4
Osa03LNT0227300.1 3 Osa03LNG0227300 26380755-26385440 long non-coding(lnc) isoforms of known genes 2120 47.21698 12
Osa03LNT0227200.1 3 Osa03LNG0227200 26396424-26397374 long non-coding(lnc) isoforms of known genes 767 63.88527 3
Osa03LNT0471100.1 3 Osa03LNG0471100 26411915-26412128 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa03LNT0227400.1 3 Osa03LNG0227400 26445311-26448758 long non-coding(lnc) isoforms of known genes 1652 45.52058 10
Osa03LNT0227600.1 3 Osa03LNG0227600 26541625-26542523 long non-coding(lnc) isoforms of known genes 807 56.00991 2
Osa03LNT0227500.1 3 Osa03LNG0227500 26543069-26543598 intergenetic lncRNA (lincRNA) 530 61.50943 1
Osa03LNT0227800.2 3 Osa03LNG0227800 26547357-26556151 long non-coding(lnc) isoforms of known genes 4491 46.09218 10
Osa03LNT0227800.1 3 Osa03LNG0227800 26547357-26556151 long non-coding(lnc) isoforms of known genes 4608 46.00694 9
Osa03LNT0227700.1 3 Osa03LNG0227700 26556986-26557795 intergenetic lncRNA (lincRNA) 810 48.88889 1
Osa03LNT0227900.1 3 Osa03LNG0227900 26623617-26632189 long non-coding(lnc) isoforms of known genes 2884 43.48128 12
Osa03LNT0227900.2 3 Osa03LNG0227900 26623617-26632189 long non-coding(lnc) isoforms of known genes 2888 43.55956 12
Osa03LNT0228000.1 3 Osa03LNG0228000 26623809-26625677 long non-coding(lnc) isoforms of known genes 1326 42.91101 3
Osa03LNT0471200.1 3 Osa03LNG0471200 26779936-26780229 intergenetic lncRNA (lincRNA) 294 33.67347 1
Osa03LNT0228100.1 3 Osa03LNG0228100 26916701-26924663 long non-coding(lnc) isoforms of known genes 1742 48.85189 9
Osa03LNT0228100.2 3 Osa03LNG0228100 26916701-26924663 long non-coding(lnc) isoforms of known genes 1984 48.03427 9
Osa03LNT0228200.1 3 Osa03LNG0228200 26972919-26975422 intergenetic lncRNA (lincRNA) 2504 40.49521 1
Osa03LNT0471300.1 3 Osa03LNG0471300 27116951-27117178 intergenetic lncRNA (lincRNA) 228 29.82456 1
Osa03LNT0228300.1 3 Osa03LNG0228300 27134606-27138691 long non-coding(lnc) isoforms of known genes 2924 44.39124 3
Osa03LNT0228400.1 3 Osa03LNG0228400 27269708-27274116 long non-coding(lnc) isoforms of known genes 2156 47.44898 7
Osa03LNT0228500.2 3 Osa03LNG0228500 27431867-27436591 long non-coding(lnc) isoforms of known genes 1627 59.61893 3
Osa03LNT0228500.1 3 Osa03LNG0228500 27431867-27436591 long non-coding(lnc) isoforms of known genes 3496 46.05263 3
Osa03LNT0228600.1 3 Osa03LNG0228600 27545857-27550134 long non-coding(lnc) isoforms of known genes 1927 49.76648 13
Osa03LNT0228700.1 3 Osa03LNG0228700 27583507-27592803 long non-coding(lnc) isoforms of known genes 4170 49.11271 8
Osa03LNT0228800.1 3 Osa03LNG0228800 27644646-27647511 long non-coding(lnc) isoforms of known genes 2773 43.59899 2
Osa03LNT0193300.2 3 Osa03LNG0193300 276806-278906 long non-coding(lnc) isoforms of known genes 1615 49.28793 3
Osa03LNT0193300.1 3 Osa03LNG0193300 276806-278906 long non-coding(lnc) isoforms of known genes 1194 54.60637 3
Osa03LNT0229000.2 3 Osa03LNG0229000 27705349-27710717 long non-coding(lnc) isoforms of known genes 2903 52.1185 11
Osa03LNT0229000.1 3 Osa03LNG0229000 27705349-27710717 long non-coding(lnc) isoforms of known genes 3284 53.53228 8
Osa03LNT0228900.1 3 Osa03LNG0228900 27715160-27717505 intergenetic lncRNA (lincRNA) 1223 43.58136 5
Osa03LNT0229100.1 3 Osa03LNG0229100 27861769-27872174 long non-coding(lnc) isoforms of known genes 3114 47.17405 23
Osa03LNT0229100.2 3 Osa03LNG0229100 27861769-27872174 long non-coding(lnc) isoforms of known genes 3109 47.18559 23
Osa03LNT0229200.1 3 Osa03LNG0229200 27989349-27994999 long non-coding(lnc) isoforms of known genes 2066 45.98258 11
Osa03LNT0229300.1 3 Osa03LNG0229300 28054566-28061033 sense lncRNA 691 58.17656 2
Osa03LNT0229400.1 3 Osa03LNG0229400 28164817-28167423 long non-coding(lnc) isoforms of known genes 1202 51.16473 6
Osa03LNT0196800.1 3 Osa03LNG0196800 2823077-2828037 long non-coding(lnc) isoforms of known genes 3001 45.45152 13
Osa03LNT0196800.2 3 Osa03LNG0196800 2823077-2828037 long non-coding(lnc) isoforms of known genes 3116 45.15404 12
Osa03LNT0229500.1 3 Osa03LNG0229500 28240401-28245227 long non-coding(lnc) isoforms of known genes 1964 50.45825 10
Osa03LNT0229600.2 3 Osa03LNG0229600 28248757-28259877 long non-coding(lnc) isoforms of known genes 4021 46.48097 21
Osa03LNT0229600.1 3 Osa03LNG0229600 28248757-28259877 long non-coding(lnc) isoforms of known genes 4348 46.15915 21
Osa03LNT0229700.1 3 Osa03LNG0229700 28308368-28312269 long non-coding(lnc) isoforms of known genes 1830 44.64481 14
Osa03LNT0229800.1 3 Osa03LNG0229800 28358127-28362102 long non-coding(lnc) isoforms of known genes 2546 51.41398 7
Osa03LNT0229900.1 3 Osa03LNG0229900 28448846-28455618 long non-coding(lnc) isoforms of known genes 3022 40.00662 12
Osa03LNT0230000.1 3 Osa03LNG0230000 28474312-28483650 long non-coding(lnc) isoforms of known genes 2221 45.06979 20
Osa03LNT0230100.1 3 Osa03LNG0230100 28565482-28571308 long non-coding(lnc) isoforms of known genes 4225 56.14201 5
Osa03LNT0230100.2 3 Osa03LNG0230100 28565482-28571308 long non-coding(lnc) isoforms of known genes 4203 56.22175 5
Osa03LNT0230200.1 3 Osa03LNG0230200 28572654-28577761 long non-coding(lnc) isoforms of known genes 4734 46.81031 3
Osa03LNT0230300.1 3 Osa03LNG0230300 28638347-28643738 long non-coding(lnc) isoforms of known genes 2978 45.19812 12
Osa03LNT0230400.1 3 Osa03LNG0230400 28690392-28700641 long non-coding(lnc) isoforms of known genes 3721 43.40231 18
Osa03LNT0230500.1 3 Osa03LNG0230500 28719688-28736316 long non-coding(lnc) isoforms of known genes 3911 49.32242 3
Osa03LNT0230500.2 3 Osa03LNG0230500 28719688-28736316 Antisense lncRNA 427 65.57377 2
Osa03LNT0230600.1 3 Osa03LNG0230600 28795423-28798180 sense lncRNA 2021 51.75656 2
Osa03LNT0230800.1 3 Osa03LNG0230800 28852502-28854632 long non-coding(lnc) isoforms of known genes 554 61.19134 2
Osa03LNT0230700.1 3 Osa03LNG0230700 28869083-28873175 long non-coding(lnc) isoforms of known genes 2382 42.61125 2
Osa03LNT0196900.1 3 Osa03LNG0196900 2897499-2900285 long non-coding(lnc) isoforms of known genes 2443 41.30168 3
Osa03LNT0230900.1 3 Osa03LNG0230900 29039345-29045538 long non-coding(lnc) isoforms of known genes 1929 48.00415 13
Osa03LNT0231000.1 3 Osa03LNG0231000 29067766-29071481 long non-coding(lnc) isoforms of known genes 1134 45.41446 8
Osa03LNT0231100.1 3 Osa03LNG0231100 29076980-29081994 sense lncRNA 2963 45.05569 4
Osa03LNT0231100.2 3 Osa03LNG0231100 29076980-29081994 sense lncRNA 2737 42.38217 2
Osa03LNT0231200.1 3 Osa03LNG0231200 29100788-29103513 long non-coding(lnc) isoforms of known genes 877 53.24971 5
Osa03LNT0231300.1 3 Osa03LNG0231300 29137675-29142743 long non-coding(lnc) isoforms of known genes 2463 42.71214 13
Osa03LNT0197000.5 3 Osa03LNG0197000 2922849-2931528 long non-coding(lnc) isoforms of known genes 3538 46.0147 14
Osa03LNT0197000.2 3 Osa03LNG0197000 2922849-2931528 long non-coding(lnc) isoforms of known genes 2194 50.82042 15
Osa03LNT0197000.1 3 Osa03LNG0197000 2922849-2931528 long non-coding(lnc) isoforms of known genes 2054 51.70399 13
Osa03LNT0197000.6 3 Osa03LNG0197000 2922849-2931528 long non-coding(lnc) isoforms of known genes 2114 51.46641 14
Osa03LNT0197000.4 3 Osa03LNG0197000 2922849-2931528 long non-coding(lnc) isoforms of known genes 2187 50.70873 15
Osa03LNT0197000.3 3 Osa03LNG0197000 2922849-2931528 long non-coding(lnc) isoforms of known genes 2973 47.79684 14
Osa03LNT0197100.1 3 Osa03LNG0197100 2925817-2926025 intergenetic lncRNA (lincRNA) 209 27.7512 1
Osa03LNT0231500.1 3 Osa03LNG0231500 29329004-29336543 long non-coding(lnc) isoforms of known genes 2360 51.86441 8
Osa03LNT0471400.1 3 Osa03LNG0471400 29370316-29370516 intergenetic lncRNA (lincRNA) 201 42.28856 1
Osa03LNT0231400.1 3 Osa03LNG0231400 29382370-29382675 intergenetic lncRNA (lincRNA) 306 63.0719 1
Osa03LNT0231400.2 3 Osa03LNG0231400 29382370-29382675 intergenetic lncRNA (lincRNA) 305 63.27869 1
Osa03LNT0231700.1 3 Osa03LNG0231700 29560551-29564681 long non-coding(lnc) isoforms of known genes 2739 41.58452 7
Osa03LNT0231600.1 3 Osa03LNG0231600 29570932-29571427 intergenetic lncRNA (lincRNA) 496 32.8629 1
Osa03LNT0193100.1 3 Osa03LNG0193100 295731-297895 long non-coding(lnc) isoforms of known genes 1659 53.044 5
Osa03LNT0462800.1 3 Osa03LNG0462800 2957795-2958049 intergenetic lncRNA (lincRNA) 255 60.39216 1
Osa03LNT0231800.1 3 Osa03LNG0231800 29583117-29589350 long non-coding(lnc) isoforms of known genes 2913 44.24991 10
Osa03LNT0231900.1 3 Osa03LNG0231900 29592966-29595747 long non-coding(lnc) isoforms of known genes 1290 53.72093 11
Osa03LNT0232000.1 3 Osa03LNG0232000 29596367-29606318 long non-coding(lnc) isoforms of known genes 1852 55.56156 6
Osa03LNT0232100.1 3 Osa03LNG0232100 29626665-29632504 long non-coding(lnc) isoforms of known genes 1862 57.14286 3
Osa03LNT0232200.1 3 Osa03LNG0232200 29705013-29722005 long non-coding(lnc) isoforms of known genes 2455 49.53157 14
Osa03LNT0232300.1 3 Osa03LNG0232300 29745719-29747861 long non-coding(lnc) isoforms of known genes 945 56.8254 4