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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0232400.1 3 Osa03LNG0232400 29774689-29778540 long non-coding(lnc) isoforms of known genes 1813 44.62217 11
Osa03LNT0232400.2 3 Osa03LNG0232400 29774689-29778540 long non-coding(lnc) isoforms of known genes 2033 43.38416 10
Osa03LNT0232500.1 3 Osa03LNG0232500 29788461-29791197 long non-coding(lnc) isoforms of known genes 1165 58.45494 5
Osa03LNT0232600.1 3 Osa03LNG0232600 29889651-29893189 long non-coding(lnc) isoforms of known genes 1156 41.17647 8
Osa03LNT0232600.2 3 Osa03LNG0232600 29889651-29893189 long non-coding(lnc) isoforms of known genes 3357 43.96783 34
Osa03LNT0232800.1 3 Osa03LNG0232800 29976199-29978391 long non-coding(lnc) isoforms of known genes 1367 58.44916 4
Osa03LNT0232800.2 3 Osa03LNG0232800 29976199-29978391 long non-coding(lnc) isoforms of known genes 1284 58.72274 3
Osa03LNT0471500.1 3 Osa03LNG0471500 29978839-29979113 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa03LNT0471600.1 3 Osa03LNG0471600 29978839-29979113 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa03LNT0232700.1 3 Osa03LNG0232700 29983668-29985717 intergenetic lncRNA (lincRNA) 2050 46.29268 1
Osa03LNT0232900.1 3 Osa03LNG0232900 30027168-30029789 sense lncRNA 2531 39.90518 2
Osa03LNT0232900.2 3 Osa03LNG0232900 30027168-30029789 sense lncRNA 2144 40.57836 3
Osa03LNT0233000.1 3 Osa03LNG0233000 30039117-30042976 sense lncRNA 2602 47.46349 2
Osa03LNT0233100.1 3 Osa03LNG0233100 30062330-30066003 long non-coding(lnc) isoforms of known genes 1646 45.80802 10
Osa03LNT0233200.1 3 Osa03LNG0233200 30085469-30090107 long non-coding(lnc) isoforms of known genes 1418 48.378 11
Osa03LNT0233300.1 3 Osa03LNG0233300 30094435-30099093 long non-coding(lnc) isoforms of known genes 976 52.86885 8
Osa03LNT0233400.1 3 Osa03LNG0233400 30100268-30101757 long non-coding(lnc) isoforms of known genes 963 34.4756 4
Osa03LNT0233500.1 3 Osa03LNG0233500 30119649-30123245 long non-coding(lnc) isoforms of known genes 1362 53.59765 8
Osa03LNT0233700.3 3 Osa03LNG0233700 30156991-30173929 long non-coding(lnc) isoforms of known genes 2512 46.13854 16
Osa03LNT0233700.4 3 Osa03LNG0233700 30156991-30173929 long non-coding(lnc) isoforms of known genes 3456 43.08449 15
Osa03LNT0233700.1 3 Osa03LNG0233700 30156991-30173929 long non-coding(lnc) isoforms of known genes 2510 46.13546 16
Osa03LNT0233700.2 3 Osa03LNG0233700 30156991-30173929 long non-coding(lnc) isoforms of known genes 2808 45.26353 17
Osa03LNT0233600.1 3 Osa03LNG0233600 30181713-30185071 long non-coding(lnc) isoforms of known genes 2808 51.35328 5
Osa03LNT0233800.1 3 Osa03LNG0233800 30188211-30191567 long non-coding(lnc) isoforms of known genes 2443 44.20794 7
Osa03LNT0233900.1 3 Osa03LNG0233900 30440077-30445241 long non-coding(lnc) isoforms of known genes 1866 49.46409 7
Osa03LNT0234000.1 3 Osa03LNG0234000 30453833-30458700 long non-coding(lnc) isoforms of known genes 1205 47.3029 11
Osa03LNT0234100.1 3 Osa03LNG0234100 30532225-30535298 long non-coding(lnc) isoforms of known genes 1190 50.42017 6
Osa03LNT0234200.1 3 Osa03LNG0234200 30548976-30556242 long non-coding(lnc) isoforms of known genes 4008 46.33234 10
Osa03LNT0234400.1 3 Osa03LNG0234400 30564703-30582453 long non-coding(lnc) isoforms of known genes 11661 44.19004 19
Osa03LNT0234300.1 3 Osa03LNG0234300 30613929-30614441 intergenetic lncRNA (lincRNA) 513 54.77583 1
Osa03LNT0234500.1 3 Osa03LNG0234500 30679757-30689225 long non-coding(lnc) isoforms of known genes 3496 41.41876 15
Osa03LNT0234600.1 3 Osa03LNG0234600 30727013-30733507 long non-coding(lnc) isoforms of known genes 2753 49.50963 7
Osa03LNT0234700.1 3 Osa03LNG0234700 30755832-30757457 long non-coding(lnc) isoforms of known genes 891 62.17733 3
Osa03LNT0197200.1 3 Osa03LNG0197200 3076031-3083674 long non-coding(lnc) isoforms of known genes 1968 46.13821 8
Osa03LNT0462900.1 3 Osa03LNG0462900 3086817-3087041 intergenetic lncRNA (lincRNA) 225 26.22222 1
Osa03LNT0463000.1 3 Osa03LNG0463000 3086817-3087044 intergenetic lncRNA (lincRNA) 228 26.31579 1
Osa03LNT0234900.1 3 Osa03LNG0234900 30901840-30903031 long non-coding(lnc) isoforms of known genes 903 60.35437 4
Osa03LNT0234900.2 3 Osa03LNG0234900 30901840-30903031 long non-coding(lnc) isoforms of known genes 912 60.19737 4
Osa03LNT0234800.1 3 Osa03LNG0234800 30903878-30907154 long non-coding(lnc) isoforms of known genes 1648 53.70146 7
Osa03LNT0471700.1 3 Osa03LNG0471700 30923605-30923841 intergenetic lncRNA (lincRNA) 237 27.8481 1
Osa03LNT0471800.1 3 Osa03LNG0471800 30924039-30924282 intergenetic lncRNA (lincRNA) 244 26.63934 1
Osa03LNT0235100.1 3 Osa03LNG0235100 30935662-30942902 long non-coding(lnc) isoforms of known genes 2272 47.35915 12
Osa03LNT0235000.1 3 Osa03LNG0235000 30943564-30945964 long non-coding(lnc) isoforms of known genes 1128 61.96809 5
Osa03LNT0235200.1 3 Osa03LNG0235200 31014832-31017424 long non-coding(lnc) isoforms of known genes 1624 48.76847 3
Osa03LNT0235300.1 3 Osa03LNG0235300 31064074-31064927 intergenetic lncRNA (lincRNA) 642 52.49221 2
Osa03LNT0235400.1 3 Osa03LNG0235400 31191477-31193820 long non-coding(lnc) isoforms of known genes 1892 40.80338 6
Osa03LNT0235500.2 3 Osa03LNG0235500 31225048-31231879 long non-coding(lnc) isoforms of known genes 2705 44.76895 12
Osa03LNT0235500.1 3 Osa03LNG0235500 31225048-31231879 long non-coding(lnc) isoforms of known genes 2154 45.7753 12
Osa03LNT0235600.1 3 Osa03LNG0235600 31302940-31304756 Antisense lncRNA 213 57.74648 3
Osa03LNT0235700.2 3 Osa03LNG0235700 31321804-31326935 long non-coding(lnc) isoforms of known genes 1608 58.08458 4
Osa03LNT0235700.1 3 Osa03LNG0235700 31321804-31326935 long non-coding(lnc) isoforms of known genes 1600 58.1875 4
Osa03LNT0472000.1 3 Osa03LNG0472000 31341552-31341826 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa03LNT0471900.1 3 Osa03LNG0471900 31341552-31341826 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa03LNT0472100.1 3 Osa03LNG0472100 31341893-31342136 intergenetic lncRNA (lincRNA) 244 26.63934 1
Osa03LNT0235800.1 3 Osa03LNG0235800 31455750-31458865 long non-coding(lnc) isoforms of known genes 1616 48.45297 7
Osa03LNT0235900.1 3 Osa03LNG0235900 31469926-31471769 long non-coding(lnc) isoforms of known genes 745 58.38926 3
Osa03LNT0236000.1 3 Osa03LNG0236000 31612448-31614920 long non-coding(lnc) isoforms of known genes 1314 42.84627 6
Osa03LNT0236100.1 3 Osa03LNG0236100 31682120-31685009 long non-coding(lnc) isoforms of known genes 2231 55.44599 6
Osa03LNT0236300.1 3 Osa03LNG0236300 31825518-31831294 long non-coding(lnc) isoforms of known genes 3938 45.09904 13
Osa03LNT0236200.1 3 Osa03LNG0236200 31839790-31844485 long non-coding(lnc) isoforms of known genes 2400 50.20833 6
Osa03LNT0236400.1 3 Osa03LNG0236400 31860523-31864328 long non-coding(lnc) isoforms of known genes 1902 44.37434 9
Osa03LNT0472200.1 3 Osa03LNG0472200 32000791-32001034 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa03LNT0236500.1 3 Osa03LNG0236500 32035018-32040880 long non-coding(lnc) isoforms of known genes 2626 45.27799 13
Osa03LNT0236600.1 3 Osa03LNG0236600 32043978-32048393 long non-coding(lnc) isoforms of known genes 3668 48.71865 3
Osa03LNT0236700.1 3 Osa03LNG0236700 32044090-32047358 long non-coding(lnc) isoforms of known genes 2254 44.05501 2
Osa03LNT0236800.1 3 Osa03LNG0236800 32096850-32103996 long non-coding(lnc) isoforms of known genes 2250 48.75556 17
Osa03LNT0236800.2 3 Osa03LNG0236800 32096850-32103996 long non-coding(lnc) isoforms of known genes 2734 47.54938 17
Osa03LNT0236900.1 3 Osa03LNG0236900 32182835-32183464 sense lncRNA 536 59.14179 2
Osa03LNT0237000.1 3 Osa03LNG0237000 32183701-32184319 Antisense lncRNA 333 62.46246 4
Osa03LNT0237100.1 3 Osa03LNG0237100 32251974-32257954 long non-coding(lnc) isoforms of known genes 3947 47.75779 8
Osa03LNT0472300.1 3 Osa03LNG0472300 32301113-32301341 intergenetic lncRNA (lincRNA) 229 26.63755 1
Osa03LNT0237200.1 3 Osa03LNG0237200 32325421-32327027 sense lncRNA 1520 55.0 2
Osa03LNT0237300.2 3 Osa03LNG0237300 32329019-32335108 Antisense lncRNA 3691 40.63939 6
Osa03LNT0237300.1 3 Osa03LNG0237300 32329019-32335108 Antisense lncRNA 2218 41.70424 5
Osa03LNT0237400.1 3 Osa03LNG0237400 32384836-32388216 long non-coding(lnc) isoforms of known genes 1709 47.10357 11
Osa03LNT0237500.1 3 Osa03LNG0237500 32398327-32399844 sense lncRNA 488 46.92623 2
Osa03LNT0237700.1 3 Osa03LNG0237700 32491934-32494484 intergenetic lncRNA (lincRNA) 893 50.95185 2
Osa03LNT0237600.1 3 Osa03LNG0237600 32495294-32496690 intergenetic lncRNA (lincRNA) 1397 36.22047 1
Osa03LNT0237800.1 3 Osa03LNG0237800 32513643-32515995 long non-coding(lnc) isoforms of known genes 1492 47.92225 6
Osa03LNT0238100.1 3 Osa03LNG0238100 32550892-32554310 long non-coding(lnc) isoforms of known genes 1338 50.22422 10
Osa03LNT0238200.1 3 Osa03LNG0238200 32560362-32562816 long non-coding(lnc) isoforms of known genes 1350 39.18519 5
Osa03LNT0237900.1 3 Osa03LNG0237900 32578026-32578669 intergenetic lncRNA (lincRNA) 644 48.4472 1
Osa03LNT0238000.1 3 Osa03LNG0238000 32580257-32580718 intronic lncRNA 462 45.671 1
Osa03LNT0238300.1 3 Osa03LNG0238300 32591747-32599028 long non-coding(lnc) isoforms of known genes 5105 44.11361 6
Osa03LNT0238400.1 3 Osa03LNG0238400 32696464-32698801 long non-coding(lnc) isoforms of known genes 1161 55.98622 3
Osa03LNT0238500.1 3 Osa03LNG0238500 32829161-32832483 long non-coding(lnc) isoforms of known genes 1452 40.01377 5
Osa03LNT0238700.1 3 Osa03LNG0238700 32869591-32884185 long non-coding(lnc) isoforms of known genes 2862 53.98323 10
Osa03LNT0238600.2 3 Osa03LNG0238600 32911242-32915158 long non-coding(lnc) isoforms of known genes 1802 40.45505 5
Osa03LNT0238600.1 3 Osa03LNG0238600 32911242-32915158 long non-coding(lnc) isoforms of known genes 1405 47.04626 6
Osa03LNT0472400.1 3 Osa03LNG0472400 32942256-32942529 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa03LNT0472500.1 3 Osa03LNG0472500 32942256-32942529 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa03LNT0238800.1 3 Osa03LNG0238800 32974324-32976911 long non-coding(lnc) isoforms of known genes 1152 46.44097 2
Osa03LNT0238900.1 3 Osa03LNG0238900 33038059-33043581 long non-coding(lnc) isoforms of known genes 1765 49.46176 11
Osa03LNT0239000.1 3 Osa03LNG0239000 33065138-33070847 long non-coding(lnc) isoforms of known genes 2477 49.77796 9
Osa03LNT0239100.1 3 Osa03LNG0239100 33138623-33141454 long non-coding(lnc) isoforms of known genes 1597 49.90607 5
Osa03LNT0472600.1 3 Osa03LNG0472600 33177335-33177564 intergenetic lncRNA (lincRNA) 230 27.82609 1
Osa03LNT0239200.1 3 Osa03LNG0239200 33193897-33198077 long non-coding(lnc) isoforms of known genes 1773 48.56176 9
Osa03LNT0239300.1 3 Osa03LNG0239300 33354979-33355456 intergenetic lncRNA (lincRNA) 478 63.38912 1
Osa03LNT0239400.1 3 Osa03LNG0239400 33394172-33402259 long non-coding(lnc) isoforms of known genes 3498 42.62436 7
Osa03LNT0239500.1 3 Osa03LNG0239500 33398069-33398300 intronic lncRNA 232 28.01724 1