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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0239600.1 3 Osa03LNG0239600 33447454-33450888 intergenetic lncRNA (lincRNA) 1894 43.98099 2
Osa03LNT0239700.1 3 Osa03LNG0239700 33494125-33500457 long non-coding(lnc) isoforms of known genes 2612 50.80398 12
Osa03LNT0239800.1 3 Osa03LNG0239800 33519844-33521740 intergenetic lncRNA (lincRNA) 1344 47.32143 7
Osa03LNT0239900.1 3 Osa03LNG0239900 33525483-33528162 long non-coding(lnc) isoforms of known genes 1815 47.6584 7
Osa03LNT0240000.2 3 Osa03LNG0240000 33530086-33544590 long non-coding(lnc) isoforms of known genes 6878 40.02617 8
Osa03LNT0240000.1 3 Osa03LNG0240000 33530086-33544590 long non-coding(lnc) isoforms of known genes 8893 42.5953 13
Osa03LNT0240100.2 3 Osa03LNG0240100 33631927-33636593 long non-coding(lnc) isoforms of known genes 2485 44.42656 14
Osa03LNT0240100.1 3 Osa03LNG0240100 33631927-33636593 long non-coding(lnc) isoforms of known genes 2460 44.5935 14
Osa03LNT0240200.1 3 Osa03LNG0240200 33688013-33692305 long non-coding(lnc) isoforms of known genes 1151 48.56646 10
Osa03LNT0472700.1 3 Osa03LNG0472700 33726988-33727215 intergenetic lncRNA (lincRNA) 228 27.63158 1
Osa03LNT0240300.1 3 Osa03LNG0240300 33744048-33749491 long non-coding(lnc) isoforms of known genes 3654 42.14559 7
Osa03LNT0240300.2 3 Osa03LNG0240300 33744048-33749491 long non-coding(lnc) isoforms of known genes 3402 42.5632 8
Osa03LNT0240400.1 3 Osa03LNG0240400 33837942-33841646 long non-coding(lnc) isoforms of known genes 1836 45.9695 5
Osa03LNT0240500.1 3 Osa03LNG0240500 33850137-33855046 long non-coding(lnc) isoforms of known genes 2912 50.34341 12
Osa03LNT0240600.1 3 Osa03LNG0240600 33891972-33894601 long non-coding(lnc) isoforms of known genes 1186 48.14503 6
Osa03LNT0240700.1 3 Osa03LNG0240700 33995633-33998631 long non-coding(lnc) isoforms of known genes 1709 44.00234 6
Osa03LNT0240900.1 3 Osa03LNG0240900 34010918-34024486 long non-coding(lnc) isoforms of known genes 3012 46.44754 27
Osa03LNT0240800.3 3 Osa03LNG0240800 34039038-34045098 intergenetic lncRNA (lincRNA) 1576 36.16751 5
Osa03LNT0240800.1 3 Osa03LNG0240800 34039038-34045098 intergenetic lncRNA (lincRNA) 1512 36.37566 4
Osa03LNT0240800.2 3 Osa03LNG0240800 34039038-34045098 intergenetic lncRNA (lincRNA) 792 36.4899 3
Osa03LNT0472800.1 3 Osa03LNG0472800 34090903-34091175 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa03LNT0241000.1 3 Osa03LNG0241000 34202464-34206271 long non-coding(lnc) isoforms of known genes 1785 53.44538 6
Osa03LNT0241100.1 3 Osa03LNG0241100 34396969-34400514 long non-coding(lnc) isoforms of known genes 2228 42.50449 6
Osa03LNT0241200.1 3 Osa03LNG0241200 34435026-34438452 long non-coding(lnc) isoforms of known genes 1684 56.05701 4
Osa03LNT0241300.1 3 Osa03LNG0241300 34439368-34444387 long non-coding(lnc) isoforms of known genes 2394 45.36341 7
Osa03LNT0241300.2 3 Osa03LNG0241300 34439368-34444387 long non-coding(lnc) isoforms of known genes 2353 45.21887 7
Osa03LNT0241400.1 3 Osa03LNG0241400 34439921-34441347 long non-coding(lnc) isoforms of known genes 1110 43.33333 2
Osa03LNT0241500.1 3 Osa03LNG0241500 34469161-34473227 intergenetic lncRNA (lincRNA) 2027 41.14455 4
Osa03LNT0241500.3 3 Osa03LNG0241500 34469161-34473227 intergenetic lncRNA (lincRNA) 1387 41.24009 3
Osa03LNT0241500.2 3 Osa03LNG0241500 34469161-34473227 intergenetic lncRNA (lincRNA) 971 46.24099 5
Osa03LNT0241600.1 3 Osa03LNG0241600 34474716-34477056 long non-coding(lnc) isoforms of known genes 2111 43.43913 3
Osa03LNT0241700.1 3 Osa03LNG0241700 34554649-34560838 long non-coding(lnc) isoforms of known genes 2363 47.90521 14
Osa03LNT0241800.1 3 Osa03LNG0241800 34602684-34605756 long non-coding(lnc) isoforms of known genes 2132 41.69794 5
Osa03LNT0241900.1 3 Osa03LNG0241900 34610054-34614454 long non-coding(lnc) isoforms of known genes 3184 53.45477 5
Osa03LNT0242000.1 3 Osa03LNG0242000 34688287-34690676 long non-coding(lnc) isoforms of known genes 1666 52.88115 6
Osa03LNT0242100.1 3 Osa03LNG0242100 34700801-34705439 long non-coding(lnc) isoforms of known genes 2807 44.03278 5
Osa03LNT0197300.1 3 Osa03LNG0197300 3471225-3473935 sense lncRNA 2479 42.27511 3
Osa03LNT0242200.1 3 Osa03LNG0242200 34728221-34731521 long non-coding(lnc) isoforms of known genes 1209 45.90571 7
Osa03LNT0242300.1 3 Osa03LNG0242300 34808943-34813179 long non-coding(lnc) isoforms of known genes 478 52.09205 3
Osa03LNT0197400.1 3 Osa03LNG0197400 3482492-3486523 long non-coding(lnc) isoforms of known genes 3358 43.44848 4
Osa03LNT0197600.1 3 Osa03LNG0197600 3487755-3493408 long non-coding(lnc) isoforms of known genes 1653 41.80278 3
Osa03LNT0197600.2 3 Osa03LNG0197600 3487755-3493408 long non-coding(lnc) isoforms of known genes 1116 43.01075 3
Osa03LNT0242400.1 3 Osa03LNG0242400 34895427-34896125 sense lncRNA 609 64.20361 2
Osa03LNT0242500.1 3 Osa03LNG0242500 34896339-34900908 long non-coding(lnc) isoforms of known genes 1725 46.89855 8
Osa03LNT0242600.1 3 Osa03LNG0242600 34906648-34912027 long non-coding(lnc) isoforms of known genes 2227 45.98114 17
Osa03LNT0242700.1 3 Osa03LNG0242700 34991908-34997832 long non-coding(lnc) isoforms of known genes 2767 44.23563 10
Osa03LNT0197500.1 3 Osa03LNG0197500 3500942-3504503 long non-coding(lnc) isoforms of known genes 3075 46.43902 3
Osa03LNT0242800.1 3 Osa03LNG0242800 35105171-35112495 long non-coding(lnc) isoforms of known genes 2434 48.27445 18
Osa03LNT0242900.1 3 Osa03LNG0242900 35147311-35149774 long non-coding(lnc) isoforms of known genes 892 43.49776 3
Osa03LNT0243000.1 3 Osa03LNG0243000 35252892-35255136 long non-coding(lnc) isoforms of known genes 1780 40.50562 2
Osa03LNT0243100.1 3 Osa03LNG0243100 35259526-35264535 long non-coding(lnc) isoforms of known genes 1855 46.41509 10
Osa03LNT0243100.2 3 Osa03LNG0243100 35259526-35264535 long non-coding(lnc) isoforms of known genes 1859 46.42281 10
Osa03LNT0243200.1 3 Osa03LNG0243200 35294218-35295556 intergenetic lncRNA (lincRNA) 729 56.65295 2
Osa03LNT0243300.1 3 Osa03LNG0243300 35303536-35305507 long non-coding(lnc) isoforms of known genes 1600 43.875 4
Osa03LNT0243400.1 3 Osa03LNG0243400 35312453-35317359 long non-coding(lnc) isoforms of known genes 3543 50.26813 10
Osa03LNT0243500.1 3 Osa03LNG0243500 35335192-35344429 long non-coding(lnc) isoforms of known genes 3487 44.30743 12
Osa03LNT0243700.3 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2438 48.5644 10
Osa03LNT0243700.4 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2435 50.55441 10
Osa03LNT0243700.1 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2077 49.15744 11
Osa03LNT0243700.2 3 Osa03LNG0243700 35392952-35398032 long non-coding(lnc) isoforms of known genes 2086 49.23298 11
Osa03LNT0197700.2 3 Osa03LNG0197700 3539613-3550830 long non-coding(lnc) isoforms of known genes 5477 48.03725 14
Osa03LNT0197700.1 3 Osa03LNG0197700 3539613-3550830 long non-coding(lnc) isoforms of known genes 5468 48.02487 14
Osa03LNT0243600.1 3 Osa03LNG0243600 35405850-35407271 intergenetic lncRNA (lincRNA) 694 49.27954 3
Osa03LNT0243800.1 3 Osa03LNG0243800 35414104-35416004 long non-coding(lnc) isoforms of known genes 1461 51.47159 3
Osa03LNT0243900.2 3 Osa03LNG0243900 35431583-35432455 intergenetic lncRNA (lincRNA) 497 51.91147 2
Osa03LNT0243900.1 3 Osa03LNG0243900 35431583-35432455 intergenetic lncRNA (lincRNA) 873 46.5063 1
Osa03LNT0244000.2 3 Osa03LNG0244000 35446442-35452429 long non-coding(lnc) isoforms of known genes 1575 48.38095 13
Osa03LNT0244000.1 3 Osa03LNG0244000 35446442-35452429 long non-coding(lnc) isoforms of known genes 2236 44.94633 13
Osa03LNT0244100.1 3 Osa03LNG0244100 35520662-35523888 long non-coding(lnc) isoforms of known genes 1467 52.01091 10
Osa03LNT0244200.1 3 Osa03LNG0244200 35537944-35543282 intergenetic lncRNA (lincRNA) 1499 47.8986 4
Osa03LNT0244400.2 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 3367 44.37184 16
Osa03LNT0244400.1 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 2641 46.98978 18
Osa03LNT0244400.3 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 2956 40.39242 15
Osa03LNT0244400.4 3 Osa03LNG0244400 35549181-35558038 long non-coding(lnc) isoforms of known genes 2634 46.96279 18
Osa03LNT0244300.1 3 Osa03LNG0244300 35581845-35582419 intergenetic lncRNA (lincRNA) 575 57.04348 1
Osa03LNT0472900.1 3 Osa03LNG0472900 35618227-35618545 intergenetic lncRNA (lincRNA) 319 49.84326 1
Osa03LNT0244500.1 3 Osa03LNG0244500 35619296-35620252 intergenetic lncRNA (lincRNA) 957 54.02299 1
Osa03LNT0244600.1 3 Osa03LNG0244600 35710302-35715111 intergenetic lncRNA (lincRNA) 3717 43.09927 3
Osa03LNT0244700.1 3 Osa03LNG0244700 35769862-35772247 long non-coding(lnc) isoforms of known genes 2313 47.51405 2
Osa03LNT0244800.1 3 Osa03LNG0244800 35908721-35911694 long non-coding(lnc) isoforms of known genes 2488 47.95016 4
Osa03LNT0244900.1 3 Osa03LNG0244900 35979829-35982389 long non-coding(lnc) isoforms of known genes 1635 46.66667 6
Osa03LNT0245000.1 3 Osa03LNG0245000 35985944-35986872 sense lncRNA 636 69.18239 2
Osa03LNT0245100.2 3 Osa03LNG0245100 36001958-36007469 long non-coding(lnc) isoforms of known genes 3663 42.47884 8
Osa03LNT0245100.1 3 Osa03LNG0245100 36001958-36007469 long non-coding(lnc) isoforms of known genes 2457 44.60724 7
Osa03LNT0193400.1 3 Osa03LNG0193400 361897-367014 long non-coding(lnc) isoforms of known genes 3334 41.90162 7
Osa03LNT0193400.2 3 Osa03LNG0193400 361897-367014 long non-coding(lnc) isoforms of known genes 3510 41.79487 7
Osa03LNT0245200.1 3 Osa03LNG0245200 36273417-36278548 long non-coding(lnc) isoforms of known genes 2958 48.74915 10
Osa03LNT0245300.1 3 Osa03LNG0245300 36278570-36278775 intergenetic lncRNA (lincRNA) 206 43.20388 1
Osa03LNT0245400.2 3 Osa03LNG0245400 36281110-36282366 Antisense lncRNA 317 51.1041 2
Osa03LNT0245400.1 3 Osa03LNG0245400 36281110-36282366 Antisense lncRNA 288 51.73611 3
Osa03LNT0245500.3 3 Osa03LNG0245500 36286435-36289213 long non-coding(lnc) isoforms of known genes 1459 43.9342 8
Osa03LNT0245500.1 3 Osa03LNG0245500 36286435-36289213 long non-coding(lnc) isoforms of known genes 1420 44.08451 9
Osa03LNT0245500.2 3 Osa03LNG0245500 36286435-36289213 long non-coding(lnc) isoforms of known genes 1326 44.87179 9
Osa03LNT0245600.1 3 Osa03LNG0245600 36402736-36405837 sense lncRNA 2171 53.10917 8
Osa03LNT0197800.2 3 Osa03LNG0197800 3683172-3685295 long non-coding(lnc) isoforms of known genes 1608 47.07711 5
Osa03LNT0197800.1 3 Osa03LNG0197800 3683172-3685295 long non-coding(lnc) isoforms of known genes 1700 46.76471 4
Osa03LNT0197900.1 3 Osa03LNG0197900 3717384-3721105 long non-coding(lnc) isoforms of known genes 1800 45.83333 9
Osa03LNT0198000.2 3 Osa03LNG0198000 3747934-3750546 long non-coding(lnc) isoforms of known genes 845 52.42604 3
Osa03LNT0198000.1 3 Osa03LNG0198000 3747934-3750546 long non-coding(lnc) isoforms of known genes 750 54.13333 3
Osa03LNT0198100.2 3 Osa03LNG0198100 3760652-3762293 long non-coding(lnc) isoforms of known genes 1097 47.67548 3