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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa09LNT0427800.1 9 Osa09LNG0427800 2396780-2400017 long non-coding(lnc) isoforms of known genes 3092 32.72962 2
Osa09LNT0424800.1 9 Osa09LNG0424800 244526-248804 long non-coding(lnc) isoforms of known genes 1602 51.31086 4
Osa09LNT0427900.1 9 Osa09LNG0427900 2561963-2565423 long non-coding(lnc) isoforms of known genes 2604 40.6682 5
Osa09LNT0428100.1 9 Osa09LNG0428100 2601653-2615905 long non-coding(lnc) isoforms of known genes 3653 46.72872 24
Osa09LNT0428000.1 9 Osa09LNG0428000 2640749-2643368 long non-coding(lnc) isoforms of known genes 1373 44.79243 7
Osa09LNT0428000.2 9 Osa09LNG0428000 2640749-2643368 long non-coding(lnc) isoforms of known genes 1707 43.87815 7
Osa09LNT0428200.1 9 Osa09LNG0428200 2703216-2707231 sense lncRNA 2131 58.75176 2
Osa09LNT0428300.3 9 Osa09LNG0428300 2923240-2924958 intergenetic lncRNA (lincRNA) 1516 43.79947 3
Osa09LNT0428300.4 9 Osa09LNG0428300 2923240-2924958 intergenetic lncRNA (lincRNA) 1521 43.78698 3
Osa09LNT0428300.1 9 Osa09LNG0428300 2923240-2924958 intergenetic lncRNA (lincRNA) 1024 46.875 5
Osa09LNT0428300.2 9 Osa09LNG0428300 2923240-2924958 intergenetic lncRNA (lincRNA) 1405 44.19929 4
Osa09LNT0428400.1 9 Osa09LNG0428400 3377224-3377488 intergenetic lncRNA (lincRNA) 265 48.67925 1
Osa09LNT0424900.1 9 Osa09LNG0424900 341261-341649 intergenetic lncRNA (lincRNA) 389 61.95373 1
Osa09LNT0428500.1 9 Osa09LNG0428500 3456034-3464862 long non-coding(lnc) isoforms of known genes 2227 43.01751 14
Osa09LNT0428800.1 9 Osa09LNG0428800 3492741-3493010 intronic lncRNA 270 24.07407 1
Osa09LNT0428700.1 9 Osa09LNG0428700 3492741-3493010 intronic lncRNA 270 24.07407 1
Osa09LNT0428600.1 9 Osa09LNG0428600 3586694-3601263 sense lncRNA 10896 42.52019 11
Osa09LNT0428900.1 9 Osa09LNG0428900 3631381-3633132 long non-coding(lnc) isoforms of known genes 1136 38.46831 2
Osa09LNT0429000.1 9 Osa09LNG0429000 3751131-3754743 long non-coding(lnc) isoforms of known genes 2653 49.30268 6
Osa09LNT0575800.1 9 Osa09LNG0575800 376863-377149 intergenetic lncRNA (lincRNA) 287 27.87456 1
Osa09LNT0575700.1 9 Osa09LNG0575700 376863-377149 intergenetic lncRNA (lincRNA) 287 27.87456 1
Osa09LNT0577700.1 9 Osa09LNG0577700 3842262-3842537 intergenetic lncRNA (lincRNA) 276 27.17391 1
Osa09LNT0577600.1 9 Osa09LNG0577600 3842262-3842537 intergenetic lncRNA (lincRNA) 276 27.17391 1
Osa09LNT0429100.2 9 Osa09LNG0429100 3928652-3930595 intergenetic lncRNA (lincRNA) 816 50.36765 2
Osa09LNT0429100.1 9 Osa09LNG0429100 3928652-3930595 intergenetic lncRNA (lincRNA) 600 46.5 2
Osa09LNT0429200.1 9 Osa09LNG0429200 4049742-4052363 intergenetic lncRNA (lincRNA) 898 50.22272 4
Osa09LNT0429200.2 9 Osa09LNG0429200 4049742-4052363 intergenetic lncRNA (lincRNA) 762 51.31234 3
Osa09LNT0577900.1 9 Osa09LNG0577900 4108667-4108940 intergenetic lncRNA (lincRNA) 274 26.64234 1
Osa09LNT0577800.1 9 Osa09LNG0577800 4108667-4108940 intergenetic lncRNA (lincRNA) 274 26.64234 1
Osa09LNT0425300.2 9 Osa09LNG0425300 4167-20263 Antisense lncRNA 241 58.50622 2
Osa09LNT0425300.1 9 Osa09LNG0425300 4167-20263 Antisense lncRNA 241 58.50622 3
Osa09LNT0429300.1 9 Osa09LNG0429300 4340534-4345784 intergenetic lncRNA (lincRNA) 1841 43.23737 4
Osa09LNT0429400.1 9 Osa09LNG0429400 4349872-4355175 long non-coding(lnc) isoforms of known genes 3197 43.88489 10
Osa09LNT0429500.1 9 Osa09LNG0429500 4427655-4429065 intergenetic lncRNA (lincRNA) 1411 51.45287 1
Osa09LNT0429600.1 9 Osa09LNG0429600 4813825-4814046 intergenetic lncRNA (lincRNA) 222 54.05405 1
Osa09LNT0429700.1 9 Osa09LNG0429700 5024460-5029307 Antisense lncRNA 470 51.06383 5
Osa09LNT0429700.2 9 Osa09LNG0429700 5024460-5029307 Antisense lncRNA 520 47.88462 4
Osa09LNT0578000.1 9 Osa09LNG0578000 5124286-5124501 intergenetic lncRNA (lincRNA) 216 40.74074 1
Osa09LNT0578100.1 9 Osa09LNG0578100 5184731-5184973 intergenetic lncRNA (lincRNA) 243 23.45679 1
Osa09LNT0429900.1 9 Osa09LNG0429900 5187763-5193614 sense lncRNA 2245 45.65702 4
Osa09LNT0429800.1 9 Osa09LNG0429800 5231340-5232089 intergenetic lncRNA (lincRNA) 750 50.53333 1
Osa09LNT0430000.1 9 Osa09LNG0430000 5327518-5330180 long non-coding(lnc) isoforms of known genes 756 39.55026 3
Osa09LNT0425400.1 9 Osa09LNG0425400 5637-14366 sense lncRNA 802 64.33915 2
Osa09LNT0578300.1 9 Osa09LNG0578300 5811260-5811504 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa09LNT0578200.1 9 Osa09LNG0578200 5811260-5811504 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa09LNT0578500.1 9 Osa09LNG0578500 5811570-5811845 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa09LNT0578400.1 9 Osa09LNG0578400 5811570-5811845 intergenetic lncRNA (lincRNA) 276 24.63768 1
Osa09LNT0430100.1 9 Osa09LNG0430100 5834205-5838612 Antisense lncRNA 1008 41.26984 4
Osa09LNT0430100.2 9 Osa09LNG0430100 5834205-5838612 Antisense lncRNA 1057 40.87039 5
Osa09LNT0430200.1 9 Osa09LNG0430200 5835485-5843899 long non-coding(lnc) isoforms of known genes 4097 40.27337 11
Osa09LNT0430200.2 9 Osa09LNG0430200 5835485-5843899 long non-coding(lnc) isoforms of known genes 4557 40.00439 10
Osa09LNT0425500.7 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2746 61.32556 2
Osa09LNT0425500.5 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2747 61.30324 4
Osa09LNT0425500.6 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2746 61.32556 3
Osa09LNT0425500.4 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2731 61.47931 2
Osa09LNT0425500.3 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2742 61.26915 3
Osa09LNT0425500.2 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 3493 60.14887 3
Osa09LNT0425500.1 9 Osa09LNG0425500 5924-32454 Antisense lncRNA 2747 61.30324 4
Osa09LNT0430300.1 9 Osa09LNG0430300 5935135-5940509 long non-coding(lnc) isoforms of known genes 1490 41.34228 9
Osa09LNT0430400.1 9 Osa09LNG0430400 5991204-5996499 long non-coding(lnc) isoforms of known genes 1214 50.08237 4
Osa09LNT0430500.1 9 Osa09LNG0430500 6037941-6049270 long non-coding(lnc) isoforms of known genes 6717 45.54116 7
Osa09LNT0430600.1 9 Osa09LNG0430600 6252094-6260815 long non-coding(lnc) isoforms of known genes 2183 51.99267 12
Osa09LNT0430700.1 9 Osa09LNG0430700 6368476-6370099 long non-coding(lnc) isoforms of known genes 591 44.50085 5
Osa09LNT0430900.1 9 Osa09LNG0430900 6374327-6383568 long non-coding(lnc) isoforms of known genes 2740 43.86861 20
Osa09LNT0425000.1 9 Osa09LNG0425000 638058-638396 intergenetic lncRNA (lincRNA) 339 57.22714 1
Osa09LNT0430800.1 9 Osa09LNG0430800 6396831-6397743 intergenetic lncRNA (lincRNA) 913 56.07886 1
Osa09LNT0578600.1 9 Osa09LNG0578600 6664523-6664796 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa09LNT0578700.1 9 Osa09LNG0578700 6664523-6664796 intergenetic lncRNA (lincRNA) 274 24.08759 1
Osa09LNT0578800.1 9 Osa09LNG0578800 6665009-6665270 intergenetic lncRNA (lincRNA) 262 41.22137 1
Osa09LNT0425600.1 9 Osa09LNG0425600 6682-33200 sense lncRNA 2735 58.17185 4
Osa09LNT0425600.2 9 Osa09LNG0425600 6682-33200 sense lncRNA 2733 58.21442 3
Osa09LNT0431000.1 9 Osa09LNG0431000 6775339-6776167 intergenetic lncRNA (lincRNA) 647 49.14992 2
Osa09LNT0578900.1 9 Osa09LNG0578900 7039787-7040063 intergenetic lncRNA (lincRNA) 277 27.79783 1
Osa09LNT0431100.1 9 Osa09LNG0431100 7246565-7247343 long non-coding(lnc) isoforms of known genes 501 40.31936 3
Osa09LNT0431200.1 9 Osa09LNG0431200 7293062-7300542 long non-coding(lnc) isoforms of known genes 3511 49.78639 4
Osa09LNT0431300.1 9 Osa09LNG0431300 7347496-7351866 long non-coding(lnc) isoforms of known genes 1640 51.46341 8
Osa09LNT0579100.1 9 Osa09LNG0579100 7678644-7678919 intergenetic lncRNA (lincRNA) 276 32.97101 1
Osa09LNT0579000.1 9 Osa09LNG0579000 7678644-7678919 intergenetic lncRNA (lincRNA) 276 32.97101 1
Osa09LNT0579200.1 9 Osa09LNG0579200 7814022-7814251 intergenetic lncRNA (lincRNA) 230 48.69565 1
Osa09LNT0431400.1 9 Osa09LNG0431400 7871598-7872533 sense lncRNA 745 45.2349 2
Osa09LNT0431500.1 9 Osa09LNG0431500 7918463-7918701 intronic lncRNA 239 31.79916 1
Osa09LNT0431600.1 9 Osa09LNG0431600 7918466-7918698 intronic lncRNA 233 32.61803 1
Osa09LNT0579300.1 9 Osa09LNG0579300 7980960-7981164 intergenetic lncRNA (lincRNA) 205 37.56098 1
Osa09LNT0426200.1 9 Osa09LNG0426200 805611-805815 intronic lncRNA 205 23.90244 1
Osa09LNT0431700.2 9 Osa09LNG0431700 8200014-8203350 long non-coding(lnc) isoforms of known genes 2113 47.32608 5
Osa09LNT0431700.1 9 Osa09LNG0431700 8200014-8203350 long non-coding(lnc) isoforms of known genes 2125 47.38824 5
Osa09LNT0579500.1 9 Osa09LNG0579500 8214039-8214313 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa09LNT0579400.1 9 Osa09LNG0579400 8214039-8214313 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa09LNT0431800.1 9 Osa09LNG0431800 8214804-8216500 long non-coding(lnc) isoforms of known genes 991 56.30676 4
Osa09LNT0426300.1 9 Osa09LNG0426300 854841-860480 long non-coding(lnc) isoforms of known genes 1920 41.45833 9
Osa09LNT0431900.1 9 Osa09LNG0431900 8603165-8609484 long non-coding(lnc) isoforms of known genes 1546 48.77102 11
Osa09LNT0579600.1 9 Osa09LNG0579600 8635071-8635341 intergenetic lncRNA (lincRNA) 271 39.11439 1
Osa09LNT0432300.2 9 Osa09LNG0432300 8647061-8661573 long non-coding(lnc) isoforms of known genes 6183 40.87013 16
Osa09LNT0432300.3 9 Osa09LNG0432300 8647061-8661573 long non-coding(lnc) isoforms of known genes 5496 42.01237 16
Osa09LNT0432300.1 9 Osa09LNG0432300 8647061-8661573 long non-coding(lnc) isoforms of known genes 4663 46.42934 19
Osa09LNT0432000.1 9 Osa09LNG0432000 8664685-8667873 long non-coding(lnc) isoforms of known genes 2810 50.92527 2
Osa09LNT0432000.2 9 Osa09LNG0432000 8664685-8667873 long non-coding(lnc) isoforms of known genes 2621 51.50706 2
Osa09LNT0432100.1 9 Osa09LNG0432100 8689298-8691986 intergenetic lncRNA (lincRNA) 2689 46.48568 1
Osa09LNT0432200.1 9 Osa09LNG0432200 8695436-8696271 long non-coding(lnc) isoforms of known genes 722 47.64543 2
Osa09LNT0432500.1 9 Osa09LNG0432500 8710181-8716835 long non-coding(lnc) isoforms of known genes 3669 43.74489 7
Osa09LNT0432500.2 9 Osa09LNG0432500 8710181-8716835 long non-coding(lnc) isoforms of known genes 1671 52.24417 8
Osa09LNT0432400.1 9 Osa09LNG0432400 8726758-8729699 long non-coding(lnc) isoforms of known genes 1198 41.06845 6
Osa09LNT0432700.1 9 Osa09LNG0432700 8879454-8883673 long non-coding(lnc) isoforms of known genes 2103 44.41274 4
Osa09LNT0432600.1 9 Osa09LNG0432600 8969210-8973862 long non-coding(lnc) isoforms of known genes 2808 46.33191 4
Osa09LNT0579800.1 9 Osa09LNG0579800 9119568-9119812 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa09LNT0579700.1 9 Osa09LNG0579700 9119568-9119812 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa09LNT0579900.1 9 Osa09LNG0579900 9165195-9165449 intergenetic lncRNA (lincRNA) 255 42.7451 1
Osa09LNT0432800.1 9 Osa09LNG0432800 9206699-9207247 intergenetic lncRNA (lincRNA) 454 44.93392 2
Osa09LNT0433000.2 9 Osa09LNG0433000 9379558-9383831 long non-coding(lnc) isoforms of known genes 1594 47.05144 9
Osa09LNT0433000.1 9 Osa09LNG0433000 9379558-9383831 long non-coding(lnc) isoforms of known genes 1616 47.09158 9
Osa09LNT0432900.1 9 Osa09LNG0432900 9397139-9398062 sense lncRNA 821 41.0475 2
Osa09LNT0580100.1 9 Osa09LNG0580100 9425748-9426007 intergenetic lncRNA (lincRNA) 260 28.46154 1
Osa09LNT0580000.1 9 Osa09LNG0580000 9425748-9426007 intergenetic lncRNA (lincRNA) 260 28.46154 1
Osa09LNT0433100.1 9 Osa09LNG0433100 9514331-9516927 long non-coding(lnc) isoforms of known genes 2169 52.42047 4
Osa09LNT0580300.1 9 Osa09LNG0580300 9603769-9604043 intergenetic lncRNA (lincRNA) 275 28.0 1
Osa09LNT0580200.1 9 Osa09LNG0580200 9603769-9604043 intergenetic lncRNA (lincRNA) 275 28.0 1
Osa09LNT0433200.2 9 Osa09LNG0433200 9663570-9665746 long non-coding(lnc) isoforms of known genes 1414 43.49364 5
Osa09LNT0433200.1 9 Osa09LNG0433200 9663570-9665746 long non-coding(lnc) isoforms of known genes 1592 43.09045 4
Osa09LNT0433300.1 9 Osa09LNG0433300 9689596-9691545 intronic lncRNA 780 48.84615 2
Osa09LNT0580400.1 9 Osa09LNG0580400 9850508-9850782 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa09LNT0580500.1 9 Osa09LNG0580500 9850508-9850782 intergenetic lncRNA (lincRNA) 275 24.72727 1
Osa09LNT0433400.1 9 Osa09LNG0433400 9970156-9978234 long non-coding(lnc) isoforms of known genes 1657 45.32287 9
Osa09LNT0433500.1 9 Osa09LNG0433500 9975608-9979385 long non-coding(lnc) isoforms of known genes 1509 53.34659 10
OsaMtLNT0452700.1 Mt OsaMtLNG0452700 111458-114259 intergenetic lncRNA (lincRNA) 2802 41.7202 1
OsaMtLNT0452800.1 Mt OsaMtLNG0452800 231448-234007 intergenetic lncRNA (lincRNA) 2560 48.67188 1