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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa03LNT0198100.1 3 Osa03LNG0198100 3760652-3762293 long non-coding(lnc) isoforms of known genes 1504 43.94947 2
Osa03LNT0198200.1 3 Osa03LNG0198200 3767753-3771331 long non-coding(lnc) isoforms of known genes 2023 48.83836 6
Osa03LNT0198300.1 3 Osa03LNG0198300 3814379-3823323 long non-coding(lnc) isoforms of known genes 754 54.50928 4
Osa03LNT0198400.1 3 Osa03LNG0198400 3918680-3921239 intergenetic lncRNA (lincRNA) 2218 48.82777 3
Osa03LNT0198500.1 3 Osa03LNG0198500 4002089-4005420 long non-coding(lnc) isoforms of known genes 1098 49.36248 6
Osa03LNT0193500.1 3 Osa03LNG0193500 405717-410093 long non-coding(lnc) isoforms of known genes 1807 44.60432 10
Osa03LNT0198700.1 3 Osa03LNG0198700 4119985-4122323 long non-coding(lnc) isoforms of known genes 1564 44.05371 5
Osa03LNT0198600.1 3 Osa03LNG0198600 4137050-4146632 long non-coding(lnc) isoforms of known genes 913 60.56955 4
Osa03LNT0198800.2 3 Osa03LNG0198800 4217189-4219023 long non-coding(lnc) isoforms of known genes 1474 51.89959 4
Osa03LNT0198800.1 3 Osa03LNG0198800 4217189-4219023 long non-coding(lnc) isoforms of known genes 1325 53.96226 5
Osa03LNT0198900.1 3 Osa03LNG0198900 4384108-4390364 long non-coding(lnc) isoforms of known genes 2158 45.64411 15
Osa03LNT0199000.1 3 Osa03LNG0199000 4407226-4408457 Antisense lncRNA 732 47.13115 6
Osa03LNT0199100.1 3 Osa03LNG0199100 4472110-4476128 long non-coding(lnc) isoforms of known genes 2377 52.7135 5
Osa03LNT0199200.1 3 Osa03LNG0199200 4584427-4585764 sense lncRNA 1258 50.9539 2
Osa03LNT0199300.1 3 Osa03LNG0199300 4682466-4685170 long non-coding(lnc) isoforms of known genes 1514 55.15192 9
Osa03LNT0193600.1 3 Osa03LNG0193600 471470-476757 long non-coding(lnc) isoforms of known genes 1746 47.30813 15
Osa03LNT0199400.1 3 Osa03LNG0199400 4720710-4724059 long non-coding(lnc) isoforms of known genes 2247 46.06142 7
Osa03LNT0199500.2 3 Osa03LNG0199500 4726165-4733998 long non-coding(lnc) isoforms of known genes 4822 43.09415 12
Osa03LNT0199500.1 3 Osa03LNG0199500 4726165-4733998 long non-coding(lnc) isoforms of known genes 3620 45.1105 13
Osa03LNT0199600.1 3 Osa03LNG0199600 4941038-4945558 long non-coding(lnc) isoforms of known genes 2077 43.76505 9
Osa03LNT0199700.1 3 Osa03LNG0199700 4951886-4953948 sense lncRNA 1989 44.09251 2
Osa03LNT0199800.1 3 Osa03LNG0199800 4954143-4955126 long non-coding(lnc) isoforms of known genes 698 43.40974 4
Osa03LNT0199900.1 3 Osa03LNG0199900 4956308-4959448 long non-coding(lnc) isoforms of known genes 1228 62.78502 6
Osa03LNT0463100.1 3 Osa03LNG0463100 5066010-5066271 intergenetic lncRNA (lincRNA) 262 42.74809 1
Osa03LNT0200000.1 3 Osa03LNG0200000 5085634-5090341 long non-coding(lnc) isoforms of known genes 1309 43.62108 8
Osa03LNT0200100.2 3 Osa03LNG0200100 5200218-5206428 long non-coding(lnc) isoforms of known genes 2721 43.80742 8
Osa03LNT0200100.1 3 Osa03LNG0200100 5200218-5206428 long non-coding(lnc) isoforms of known genes 4215 46.66667 12
Osa03LNT0200200.1 3 Osa03LNG0200200 5297336-5301348 long non-coding(lnc) isoforms of known genes 2364 43.99323 12
Osa03LNT0200300.1 3 Osa03LNG0200300 5352944-5357283 long non-coding(lnc) isoforms of known genes 1661 49.48826 8
Osa03LNT0200400.1 3 Osa03LNG0200400 5393933-5396976 long non-coding(lnc) isoforms of known genes 2767 42.82617 3
Osa03LNT0200500.1 3 Osa03LNG0200500 5441845-5444188 long non-coding(lnc) isoforms of known genes 2023 56.79684 4
Osa03LNT0200600.1 3 Osa03LNG0200600 5457946-5458155 Antisense lncRNA 210 49.04762 1
Osa03LNT0200700.1 3 Osa03LNG0200700 5548562-5550621 Antisense lncRNA 291 42.26804 3
Osa03LNT0200800.1 3 Osa03LNG0200800 5573373-5576434 long non-coding(lnc) isoforms of known genes 914 56.67396 6
Osa03LNT0200900.1 3 Osa03LNG0200900 5665269-5665995 intergenetic lncRNA (lincRNA) 727 56.39615 1
Osa03LNT0201000.1 3 Osa03LNG0201000 5692698-5698517 intergenetic lncRNA (lincRNA) 1065 49.67136 3
Osa03LNT0201100.2 3 Osa03LNG0201100 5694578-5697275 intergenetic lncRNA (lincRNA) 595 46.38655 2
Osa03LNT0201100.1 3 Osa03LNG0201100 5694578-5697275 intergenetic lncRNA (lincRNA) 1042 41.07486 2
Osa03LNT0201100.3 3 Osa03LNG0201100 5694578-5697275 intergenetic lncRNA (lincRNA) 1703 49.03112 2
Osa03LNT0201300.3 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3126 46.54511 14
Osa03LNT0201300.2 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3221 46.53834 14
Osa03LNT0201300.1 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3188 46.95734 14
Osa03LNT0201300.5 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3208 46.38404 14
Osa03LNT0201300.4 3 Osa03LNG0201300 5760848-5767440 long non-coding(lnc) isoforms of known genes 3006 47.93746 14
Osa03LNT0201200.1 3 Osa03LNG0201200 5779625-5789221 long non-coding(lnc) isoforms of known genes 4934 46.37211 9
Osa03LNT0201400.1 3 Osa03LNG0201400 5814375-5816687 long non-coding(lnc) isoforms of known genes 1224 44.93464 6
Osa03LNT0201500.1 3 Osa03LNG0201500 5829016-5835122 long non-coding(lnc) isoforms of known genes 3446 45.67615 5
Osa03LNT0201600.1 3 Osa03LNG0201600 5939190-5939701 intergenetic lncRNA (lincRNA) 430 69.76744 2
Osa03LNT0201700.1 3 Osa03LNG0201700 5955407-5960532 long non-coding(lnc) isoforms of known genes 1833 51.82761 14
Osa03LNT0201700.2 3 Osa03LNG0201700 5955407-5960532 long non-coding(lnc) isoforms of known genes 1730 50.92486 15
Osa03LNT0201800.1 3 Osa03LNG0201800 5994179-5997434 long non-coding(lnc) isoforms of known genes 2110 44.88152 4
Osa03LNT0201900.1 3 Osa03LNG0201900 6179834-6182564 long non-coding(lnc) isoforms of known genes 1660 57.40964 6
Osa03LNT0202000.1 3 Osa03LNG0202000 6184605-6187889 intergenetic lncRNA (lincRNA) 2917 46.17758 3
Osa03LNT0202100.1 3 Osa03LNG0202100 6218057-6225065 long non-coding(lnc) isoforms of known genes 1330 44.58647 5
Osa03LNT0202200.1 3 Osa03LNG0202200 6358095-6365379 long non-coding(lnc) isoforms of known genes 2846 42.30499 16
Osa03LNT0202200.2 3 Osa03LNG0202200 6358095-6365379 long non-coding(lnc) isoforms of known genes 2667 41.5823 16
Osa03LNT0202300.1 3 Osa03LNG0202300 6380281-6388758 long non-coding(lnc) isoforms of known genes 4183 45.13507 10
Osa03LNT0193800.1 3 Osa03LNG0193800 640597-645631 long non-coding(lnc) isoforms of known genes 2528 47.66614 15
Osa03LNT0202400.1 3 Osa03LNG0202400 6468343-6476409 long non-coding(lnc) isoforms of known genes 3150 44.95238 19
Osa03LNT0202500.1 3 Osa03LNG0202500 6522419-6523522 intergenetic lncRNA (lincRNA) 878 46.35535 2
Osa03LNT0202500.2 3 Osa03LNG0202500 6522419-6523522 intergenetic lncRNA (lincRNA) 992 47.07661 2
Osa03LNT0463200.1 3 Osa03LNG0463200 6534676-6534877 intergenetic lncRNA (lincRNA) 202 25.24752 1
Osa03LNT0193700.1 3 Osa03LNG0193700 656536-657827 long non-coding(lnc) isoforms of known genes 543 45.67219 3
Osa03LNT0193900.2 3 Osa03LNG0193900 662337-666757 long non-coding(lnc) isoforms of known genes 1886 51.74973 4
Osa03LNT0193900.1 3 Osa03LNG0193900 662337-666757 long non-coding(lnc) isoforms of known genes 2990 45.45151 3
Osa03LNT0202600.1 3 Osa03LNG0202600 6706188-6710441 long non-coding(lnc) isoforms of known genes 1989 59.72851 4
Osa03LNT0463300.1 3 Osa03LNG0463300 6871487-6871720 intergenetic lncRNA (lincRNA) 234 30.34188 1
Osa03LNT0202800.1 3 Osa03LNG0202800 6871825-6875383 long non-coding(lnc) isoforms of known genes 931 48.01289 9
Osa03LNT0202700.1 3 Osa03LNG0202700 6880238-6880748 intergenetic lncRNA (lincRNA) 511 50.88063 1
Osa03LNT0202900.1 3 Osa03LNG0202900 6974763-6978108 long non-coding(lnc) isoforms of known genes 1092 54.21245 3
Osa03LNT0203000.1 3 Osa03LNG0203000 6980578-6986640 long non-coding(lnc) isoforms of known genes 3336 44.78417 11
Osa03LNT0203100.1 3 Osa03LNG0203100 7102183-7104679 long non-coding(lnc) isoforms of known genes 623 54.25361 4
Osa03LNT0203300.1 3 Osa03LNG0203300 7111054-7115273 long non-coding(lnc) isoforms of known genes 1319 59.5906 7
Osa03LNT0203200.1 3 Osa03LNG0203200 7128274-7130329 long non-coding(lnc) isoforms of known genes 1383 56.39913 4
Osa03LNT0203400.1 3 Osa03LNG0203400 7139074-7146865 long non-coding(lnc) isoforms of known genes 2202 46.13987 6
Osa03LNT0203500.1 3 Osa03LNG0203500 7163390-7168860 long non-coding(lnc) isoforms of known genes 1998 45.2953 6
Osa03LNT0203500.2 3 Osa03LNG0203500 7163390-7168860 long non-coding(lnc) isoforms of known genes 2500 43.08 6
Osa03LNT0203600.1 3 Osa03LNG0203600 7290796-7293226 long non-coding(lnc) isoforms of known genes 1023 51.31965 9
Osa03LNT0203700.2 3 Osa03LNG0203700 7329417-7333788 long non-coding(lnc) isoforms of known genes 3087 50.21056 6
Osa03LNT0203700.1 3 Osa03LNG0203700 7329417-7333788 long non-coding(lnc) isoforms of known genes 2275 46.94505 8
Osa03LNT0203800.1 3 Osa03LNG0203800 7358092-7369205 long non-coding(lnc) isoforms of known genes 2491 42.15175 16
Osa03LNT0203900.1 3 Osa03LNG0203900 7366276-7366522 intronic lncRNA 247 40.08097 1
Osa03LNT0204000.1 3 Osa03LNG0204000 7565328-7567774 long non-coding(lnc) isoforms of known genes 2351 48.95789 2
Osa03LNT0204100.1 3 Osa03LNG0204100 7573271-7577555 long non-coding(lnc) isoforms of known genes 2321 47.39336 12
Osa03LNT0204100.2 3 Osa03LNG0204100 7573271-7577555 long non-coding(lnc) isoforms of known genes 2252 47.60213 11
Osa03LNT0204200.1 3 Osa03LNG0204200 7573972-7575260 long non-coding(lnc) isoforms of known genes 934 39.50749 3
Osa03LNT0204300.1 3 Osa03LNG0204300 7579448-7583738 long non-coding(lnc) isoforms of known genes 1527 49.63982 11
Osa03LNT0463400.1 3 Osa03LNG0463400 7734544-7734747 intergenetic lncRNA (lincRNA) 204 25.0 1
Osa03LNT0204400.1 3 Osa03LNG0204400 7749683-7752162 intergenetic lncRNA (lincRNA) 2363 58.5273 2
Osa03LNT0204600.1 3 Osa03LNG0204600 7754762-7763564 long non-coding(lnc) isoforms of known genes 5552 46.05548 11
Osa03LNT0204500.1 3 Osa03LNG0204500 7773866-7779811 long non-coding(lnc) isoforms of known genes 1238 50.40388 5
Osa03LNT0463500.1 3 Osa03LNG0463500 7863536-7863809 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa03LNT0463600.1 3 Osa03LNG0463600 7863536-7863809 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa03LNT0204700.1 3 Osa03LNG0204700 7896546-7901702 intergenetic lncRNA (lincRNA) 1921 54.24258 2
Osa03LNT0204800.2 3 Osa03LNG0204800 7914641-7918255 long non-coding(lnc) isoforms of known genes 3221 45.14126 5
Osa03LNT0204800.1 3 Osa03LNG0204800 7914641-7918255 long non-coding(lnc) isoforms of known genes 1585 55.07886 5
Osa03LNT0463700.1 3 Osa03LNG0463700 7974795-7975056 intergenetic lncRNA (lincRNA) 262 29.77099 1
Osa03LNT0463800.1 3 Osa03LNG0463800 7994938-7995193 intergenetic lncRNA (lincRNA) 256 43.35938 1
Osa03LNT0204900.1 3 Osa03LNG0204900 8047091-8052536 long non-coding(lnc) isoforms of known genes 2105 46.4133 14
Osa03LNT0205000.1 3 Osa03LNG0205000 8067630-8071826 long non-coding(lnc) isoforms of known genes 2446 46.07522 9