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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0558600.1 12 Osa12LNG0558600 2004867-2005140 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa12LNT0558700.1 12 Osa12LNG0558700 2004867-2005140 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa12LNT0131600.1 12 Osa12LNG0131600 20061914-20066919 long non-coding(lnc) isoforms of known genes 3051 44.34612 5
Osa12LNT0115400.1 12 Osa12LNG0115400 2017496-2022875 long non-coding(lnc) isoforms of known genes 2392 45.69398 14
Osa12LNT0131700.1 12 Osa12LNG0131700 20190726-20191298 intergenetic lncRNA (lincRNA) 573 50.95986 1
Osa12LNT0131800.1 12 Osa12LNG0131800 20193139-20194743 intergenetic lncRNA (lincRNA) 1326 44.94721 3
Osa12LNT0131800.3 12 Osa12LNG0131800 20193139-20194743 intergenetic lncRNA (lincRNA) 902 47.45011 4
Osa12LNT0131800.2 12 Osa12LNG0131800 20193139-20194743 intergenetic lncRNA (lincRNA) 987 47.61905 4
Osa12LNT0131900.1 12 Osa12LNG0131900 20197288-20199444 intergenetic lncRNA (lincRNA) 761 61.49803 2
Osa12LNT0115500.2 12 Osa12LNG0115500 2031777-2040591 long non-coding(lnc) isoforms of known genes 3843 40.90554 10
Osa12LNT0115500.1 12 Osa12LNG0115500 2031777-2040591 long non-coding(lnc) isoforms of known genes 3777 40.82605 10
Osa12LNT0132100.1 12 Osa12LNG0132100 20638811-20640500 intergenetic lncRNA (lincRNA) 1690 53.72781 1
Osa12LNT0132100.2 12 Osa12LNG0132100 20638811-20640500 intergenetic lncRNA (lincRNA) 1680 53.80952 1
Osa12LNT0132000.1 12 Osa12LNG0132000 20660199-20660921 intergenetic lncRNA (lincRNA) 723 47.44122 1
Osa12LNT0132200.1 12 Osa12LNG0132200 20749145-20752135 long non-coding(lnc) isoforms of known genes 1922 46.56608 2
Osa12LNT0132300.1 12 Osa12LNG0132300 20813626-20813988 intergenetic lncRNA (lincRNA) 280 56.78571 2
Osa12LNT0132400.2 12 Osa12LNG0132400 20816365-20820738 long non-coding(lnc) isoforms of known genes 1962 48.16514 4
Osa12LNT0132400.1 12 Osa12LNG0132400 20816365-20820738 long non-coding(lnc) isoforms of known genes 1877 48.5349 4
Osa12LNT0132500.1 12 Osa12LNG0132500 20844119-20846021 long non-coding(lnc) isoforms of known genes 526 53.42205 2
Osa12LNT0132600.1 12 Osa12LNG0132600 21023346-21024311 intergenetic lncRNA (lincRNA) 966 30.0207 1
Osa12LNT0564600.1 12 Osa12LNG0564600 21155099-21155341 intergenetic lncRNA (lincRNA) 243 25.5144 1
Osa12LNT0564700.1 12 Osa12LNG0564700 21155099-21155341 intergenetic lncRNA (lincRNA) 243 25.5144 1
Osa12LNT0564800.1 12 Osa12LNG0564800 21155408-21155678 intergenetic lncRNA (lincRNA) 271 25.46125 1
Osa12LNT0564900.1 12 Osa12LNG0564900 21155408-21155678 intergenetic lncRNA (lincRNA) 271 25.46125 1
Osa12LNT0565000.1 12 Osa12LNG0565000 21155898-21156129 intergenetic lncRNA (lincRNA) 232 39.65517 1
Osa12LNT0565100.1 12 Osa12LNG0565100 21198001-21198200 intergenetic lncRNA (lincRNA) 200 36.5 1
Osa12LNT0132700.1 12 Osa12LNG0132700 21206606-21206965 intergenetic lncRNA (lincRNA) 360 51.11111 1
Osa12LNT0132900.1 12 Osa12LNG0132900 21225806-21229401 long non-coding(lnc) isoforms of known genes 1596 44.86216 8
Osa12LNT0132800.1 12 Osa12LNG0132800 21230209-21234981 long non-coding(lnc) isoforms of known genes 1841 45.95329 11
Osa12LNT0115600.1 12 Osa12LNG0115600 2128346-2135196 long non-coding(lnc) isoforms of known genes 1978 43.88271 11
Osa12LNT0133000.1 12 Osa12LNG0133000 21293012-21296839 long non-coding(lnc) isoforms of known genes 918 53.15904 4
Osa12LNT0133100.1 12 Osa12LNG0133100 21321697-21322085 intergenetic lncRNA (lincRNA) 264 69.69697 2
Osa12LNT0133200.1 12 Osa12LNG0133200 21525477-21527878 sense lncRNA 1356 55.45723 5
Osa12LNT0133200.2 12 Osa12LNG0133200 21525477-21527878 sense lncRNA 1381 55.32223 5
Osa12LNT0133300.1 12 Osa12LNG0133300 21593933-21597000 long non-coding(lnc) isoforms of known genes 1091 51.05408 4
Osa12LNT0133400.1 12 Osa12LNG0133400 21666280-21669377 intergenetic lncRNA (lincRNA) 1395 49.46237 4
Osa12LNT0565200.1 12 Osa12LNG0565200 21718929-21719203 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa12LNT0565300.1 12 Osa12LNG0565300 21718929-21719203 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa12LNT0565400.1 12 Osa12LNG0565400 21719413-21719676 intergenetic lncRNA (lincRNA) 264 40.5303 1
Osa12LNT0565500.1 12 Osa12LNG0565500 21720735-21720979 intergenetic lncRNA (lincRNA) 245 23.26531 1
Osa12LNT0565700.1 12 Osa12LNG0565700 21931096-21931370 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0565600.1 12 Osa12LNG0565600 21931096-21931370 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa12LNT0565800.1 12 Osa12LNG0565800 21937981-21938214 intergenetic lncRNA (lincRNA) 234 26.49573 1
Osa12LNT0133500.1 12 Osa12LNG0133500 21964684-21970115 long non-coding(lnc) isoforms of known genes 4267 39.72346 8
Osa12LNT0133500.2 12 Osa12LNG0133500 21964684-21970115 long non-coding(lnc) isoforms of known genes 4404 39.396 7
Osa12LNT0565900.1 12 Osa12LNG0565900 21984722-21984925 intergenetic lncRNA (lincRNA) 204 37.7451 1
Osa12LNT0133700.1 12 Osa12LNG0133700 22427863-22431789 long non-coding(lnc) isoforms of known genes 1801 51.9156 8
Osa12LNT0133600.1 12 Osa12LNG0133600 22457347-22457671 intergenetic lncRNA (lincRNA) 325 69.53846 1
Osa12LNT0133800.1 12 Osa12LNG0133800 22487469-22492398 long non-coding(lnc) isoforms of known genes 3341 44.26818 4
Osa12LNT0133900.1 12 Osa12LNG0133900 22497610-22502482 long non-coding(lnc) isoforms of known genes 4131 42.41104 3