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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0134000.1 12 Osa12LNG0134000 22530250-22535023 long non-coding(lnc) isoforms of known genes 2160 51.2963 7
Osa12LNT0134100.1 12 Osa12LNG0134100 22723237-22726823 long non-coding(lnc) isoforms of known genes 3335 48.51574 3
Osa12LNT0134200.1 12 Osa12LNG0134200 22782338-22785768 long non-coding(lnc) isoforms of known genes 2043 47.13656 5
Osa12LNT0566000.1 12 Osa12LNG0566000 22828746-22829020 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0566100.1 12 Osa12LNG0566100 22828746-22829020 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0115700.1 12 Osa12LNG0115700 2285050-2287399 sense lncRNA 640 39.53125 2
Osa12LNT0134300.1 12 Osa12LNG0134300 22947734-22951075 long non-coding(lnc) isoforms of known genes 1232 53.8961 3
Osa12LNT0134400.1 12 Osa12LNG0134400 22969436-22972367 sense lncRNA 547 49.54296 2
Osa12LNT0134600.1 12 Osa12LNG0134600 22972925-22976141 long non-coding(lnc) isoforms of known genes 2226 50.9434 7
Osa12LNT0134500.1 12 Osa12LNG0134500 23000063-23001479 sense lncRNA 1246 51.76565 2
Osa12LNT0558800.1 12 Osa12LNG0558800 2307313-2307567 intronic lncRNA 255 28.62745 1
Osa12LNT0134700.1 12 Osa12LNG0134700 23135061-23137352 sense lncRNA 1299 52.27098 3
Osa12LNT0134900.1 12 Osa12LNG0134900 23157167-23164663 long non-coding(lnc) isoforms of known genes 3940 43.4264 13
Osa12LNT0135000.1 12 Osa12LNG0135000 23157388-23160048 long non-coding(lnc) isoforms of known genes 2141 42.26997 5
Osa12LNT0134800.1 12 Osa12LNG0134800 23167007-23171932 long non-coding(lnc) isoforms of known genes 3477 42.65171 3
Osa12LNT0566200.1 12 Osa12LNG0566200 23232839-23233094 intergenetic lncRNA (lincRNA) 256 28.125 1
Osa12LNT0135100.1 12 Osa12LNG0135100 23256135-23258644 long non-coding(lnc) isoforms of known genes 680 46.76471 5
Osa12LNT0135200.1 12 Osa12LNG0135200 23302326-23306289 long non-coding(lnc) isoforms of known genes 1687 51.9265 10
Osa12LNT0135400.1 12 Osa12LNG0135400 23307980-23312202 long non-coding(lnc) isoforms of known genes 1730 50.52023 10
Osa12LNT0135300.1 12 Osa12LNG0135300 23325673-23327055 long non-coding(lnc) isoforms of known genes 1294 47.75889 2
Osa12LNT0566300.1 12 Osa12LNG0566300 23380625-23380875 intergenetic lncRNA (lincRNA) 251 26.69323 1
Osa12LNT0566400.1 12 Osa12LNG0566400 23380625-23380875 intergenetic lncRNA (lincRNA) 251 26.69323 1
Osa12LNT0135500.1 12 Osa12LNG0135500 23439985-23440626 intergenetic lncRNA (lincRNA) 642 48.2866 1
Osa12LNT0566500.1 12 Osa12LNG0566500 23505800-23506027 intergenetic lncRNA (lincRNA) 228 49.5614 1
Osa12LNT0135600.1 12 Osa12LNG0135600 23584169-23593482 long non-coding(lnc) isoforms of known genes 1222 53.68249 9
Osa12LNT0135600.3 12 Osa12LNG0135600 23584169-23593482 long non-coding(lnc) isoforms of known genes 1724 47.96984 8
Osa12LNT0135600.2 12 Osa12LNG0135600 23584169-23593482 long non-coding(lnc) isoforms of known genes 1613 48.97706 9
Osa12LNT0566600.1 12 Osa12LNG0566600 23616192-23616419 intergenetic lncRNA (lincRNA) 228 28.50877 1
Osa12LNT0135700.1 12 Osa12LNG0135700 23687585-23691381 long non-coding(lnc) isoforms of known genes 2116 54.86767 12
Osa12LNT0135800.1 12 Osa12LNG0135800 23709599-23710682 Antisense lncRNA 657 50.68493 2
Osa12LNT0135900.1 12 Osa12LNG0135900 23725985-23734930 long non-coding(lnc) isoforms of known genes 4782 52.53032 16
Osa12LNT0136000.1 12 Osa12LNG0136000 23805228-23808859 long non-coding(lnc) isoforms of known genes 2227 47.05882 12
Osa12LNT0136100.1 12 Osa12LNG0136100 23823851-23829508 long non-coding(lnc) isoforms of known genes 2652 44.34389 8
Osa12LNT0136200.1 12 Osa12LNG0136200 23952505-23956048 long non-coding(lnc) isoforms of known genes 1726 51.3905 5
Osa12LNT0115800.1 12 Osa12LNG0115800 2397816-2398934 intergenetic lncRNA (lincRNA) 584 44.34932 2
Osa12LNT0566700.1 12 Osa12LNG0566700 24150599-24150810 intergenetic lncRNA (lincRNA) 212 28.77358 1
Osa12LNT0136300.1 12 Osa12LNG0136300 24204768-24208081 long non-coding(lnc) isoforms of known genes 1466 46.86221 7
Osa12LNT0115900.1 12 Osa12LNG0115900 2427464-2430081 sense lncRNA 1265 55.96838 2
Osa12LNT0136400.1 12 Osa12LNG0136400 24459198-24462001 long non-coding(lnc) isoforms of known genes 1867 48.68773 8
Osa12LNT0566800.1 12 Osa12LNG0566800 24501087-24501323 intergenetic lncRNA (lincRNA) 237 26.16034 1
Osa12LNT0136500.1 12 Osa12LNG0136500 24507244-24509054 intergenetic lncRNA (lincRNA) 1811 42.46273 1
Osa12LNT0136600.1 12 Osa12LNG0136600 24539844-24540859 intergenetic lncRNA (lincRNA) 1016 41.24016 1
Osa12LNT0566900.1 12 Osa12LNG0566900 24548139-24548364 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa12LNT0136700.1 12 Osa12LNG0136700 24815344-24817377 long non-coding(lnc) isoforms of known genes 544 58.63971 3
Osa12LNT0567000.1 12 Osa12LNG0567000 24821045-24821315 Antisense lncRNA 271 54.24354 1
Osa12LNT0567100.1 12 Osa12LNG0567100 24900485-24900748 intergenetic lncRNA (lincRNA) 264 21.59091 1
Osa12LNT0136800.1 12 Osa12LNG0136800 25001867-25003359 sense lncRNA 795 54.71698 2
Osa12LNT0567200.1 12 Osa12LNG0567200 25133408-25133681 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa12LNT0567300.1 12 Osa12LNG0567300 25133408-25133681 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa12LNT0136900.1 12 Osa12LNG0136900 25247754-25253940 long non-coding(lnc) isoforms of known genes 2049 50.90288 7