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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0031400.1 1 Osa01LNG0031400 27303264-27312183 long non-coding(lnc) isoforms of known genes 2113 45.05442 7
Osa01LNT0031300.1 1 Osa01LNG0031300 27317361-27320817 sense lncRNA 2231 45.27118 2
Osa01LNT0460300.1 1 Osa01LNG0460300 27331225-27331426 intergenetic lncRNA (lincRNA) 202 53.46535 1
Osa01LNT0031500.1 1 Osa01LNG0031500 27388819-27390875 long non-coding(lnc) isoforms of known genes 1607 41.63037 3
Osa01LNT0460400.1 1 Osa01LNG0460400 27497162-27497364 intergenetic lncRNA (lincRNA) 203 24.13793 1
Osa01LNT0031600.1 1 Osa01LNG0031600 27556072-27557521 sense lncRNA 1339 50.33607 2
Osa01LNT0031700.1 1 Osa01LNG0031700 27623492-27624044 intergenetic lncRNA (lincRNA) 553 41.22966 1
Osa01LNT0031800.1 1 Osa01LNG0031800 27677194-27681367 long non-coding(lnc) isoforms of known genes 2269 45.7911 11
Osa01LNT0031900.1 1 Osa01LNG0031900 27681933-27685673 long non-coding(lnc) isoforms of known genes 1836 53.54031 9
Osa01LNT0032100.1 1 Osa01LNG0032100 27693780-27695908 long non-coding(lnc) isoforms of known genes 1353 40.87214 3
Osa01LNT0032000.1 1 Osa01LNG0032000 27710724-27711973 intergenetic lncRNA (lincRNA) 1250 60.56 1
Osa01LNT0460600.1 1 Osa01LNG0460600 27712374-27712640 intergenetic lncRNA (lincRNA) 267 24.34457 1
Osa01LNT0460500.1 1 Osa01LNG0460500 27712374-27712640 intergenetic lncRNA (lincRNA) 267 24.34457 1
Osa01LNT0003200.1 1 Osa01LNG0003200 2785336-2785538 intronic lncRNA 203 34.97537 1
Osa01LNT0032400.1 1 Osa01LNG0032400 27906702-27920895 long non-coding(lnc) isoforms of known genes 3758 41.405 24
Osa01LNT0032200.1 1 Osa01LNG0032200 27924913-27928433 long non-coding(lnc) isoforms of known genes 1074 48.1378 9
Osa01LNT0032300.1 1 Osa01LNG0032300 27934078-27935051 intergenetic lncRNA (lincRNA) 974 56.77618 1
Osa01LNT0032500.1 1 Osa01LNG0032500 28070715-28076380 long non-coding(lnc) isoforms of known genes 2088 43.53448 10
Osa01LNT0032600.1 1 Osa01LNG0032600 28118062-28123359 sense lncRNA 2891 48.08025 7
Osa01LNT0032700.1 1 Osa01LNG0032700 28153792-28154505 intergenetic lncRNA (lincRNA) 714 42.85714 1
Osa01LNT0032800.1 1 Osa01LNG0032800 28235071-28238556 long non-coding(lnc) isoforms of known genes 2857 48.58243 6
Osa01LNT0032900.1 1 Osa01LNG0032900 28261273-28273168 long non-coding(lnc) isoforms of known genes 4366 47.34311 21
Osa01LNT0033000.1 1 Osa01LNG0033000 28325469-28328168 long non-coding(lnc) isoforms of known genes 1275 49.01961 8
Osa01LNT0003300.1 1 Osa01LNG0003300 2838057-2857964 sense lncRNA 356 62.92135 3
Osa01LNT0033100.2 1 Osa01LNG0033100 28482997-28503332 long non-coding(lnc) isoforms of known genes 2327 57.79974 5
Osa01LNT0033100.1 1 Osa01LNG0033100 28482997-28503332 long non-coding(lnc) isoforms of known genes 2289 60.24465 5
Osa01LNT0033200.3 1 Osa01LNG0033200 28541568-28545410 long non-coding(lnc) isoforms of known genes 1610 44.84472 12
Osa01LNT0033200.1 1 Osa01LNG0033200 28541568-28545410 long non-coding(lnc) isoforms of known genes 1620 44.87654 12
Osa01LNT0033200.2 1 Osa01LNG0033200 28541568-28545410 long non-coding(lnc) isoforms of known genes 1844 44.1974 11
Osa01LNT0033400.1 1 Osa01LNG0033400 28583152-28586500 long non-coding(lnc) isoforms of known genes 842 53.44418 5
Osa01LNT0033300.1 1 Osa01LNG0033300 28586762-28587208 intergenetic lncRNA (lincRNA) 447 65.10067 1
Osa01LNT0033500.1 1 Osa01LNG0033500 28657665-28660474 long non-coding(lnc) isoforms of known genes 1286 47.74495 7
Osa01LNT0033600.1 1 Osa01LNG0033600 28675518-28680143 long non-coding(lnc) isoforms of known genes 2214 53.88437 7
Osa01LNT0033700.1 1 Osa01LNG0033700 28683874-28698910 long non-coding(lnc) isoforms of known genes 4824 45.70896 27
Osa01LNT0033800.1 1 Osa01LNG0033800 28786544-28793473 long non-coding(lnc) isoforms of known genes 4057 44.95933 12
Osa01LNT0003400.1 1 Osa01LNG0003400 2892953-2896056 sense lncRNA 2822 51.98441 3
Osa01LNT0033900.1 1 Osa01LNG0033900 29066636-29076338 long non-coding(lnc) isoforms of known genes 4367 42.77536 23
Osa01LNT0034000.1 1 Osa01LNG0034000 29183845-29184972 long non-coding(lnc) isoforms of known genes 1052 59.60076 2
Osa01LNT0034100.1 1 Osa01LNG0034100 29206353-29209606 long non-coding(lnc) isoforms of known genes 2188 48.8574 5
Osa01LNT0034200.1 1 Osa01LNG0034200 29240071-29246823 long non-coding(lnc) isoforms of known genes 1129 47.82994 4
Osa01LNT0034300.2 1 Osa01LNG0034300 29474687-29475915 intergenetic lncRNA (lincRNA) 919 56.80087 3
Osa01LNT0034300.1 1 Osa01LNG0034300 29474687-29475915 intergenetic lncRNA (lincRNA) 1229 53.86493 1
Osa01LNT0034300.3 1 Osa01LNG0034300 29474687-29475915 intergenetic lncRNA (lincRNA) 800 58.25 3
Osa01LNT0034400.1 1 Osa01LNG0034400 29534964-29536139 long non-coding(lnc) isoforms of known genes 974 50.30801 3
Osa01LNT0034500.1 1 Osa01LNG0034500 29598953-29601167 long non-coding(lnc) isoforms of known genes 1209 51.6129 7
Osa01LNT0034800.1 1 Osa01LNG0034800 29652588-29669044 intergenetic lncRNA (lincRNA) 5660 40.31802 34
Osa01LNT0003500.1 1 Osa01LNG0003500 2971130-2980566 long non-coding(lnc) isoforms of known genes 2574 44.67754 18
Osa01LNT0034600.1 1 Osa01LNG0034600 29711819-29717493 intergenetic lncRNA (lincRNA) 642 48.2866 3
Osa01LNT0034600.2 1 Osa01LNG0034600 29711819-29717493 intergenetic lncRNA (lincRNA) 596 44.79866 2
Osa01LNT0034700.4 1 Osa01LNG0034700 29736362-29739447 long non-coding(lnc) isoforms of known genes 1743 48.1354 8
Osa01LNT0034700.3 1 Osa01LNG0034700 29736362-29739447 long non-coding(lnc) isoforms of known genes 1280 49.0625 8
Osa01LNT0034700.2 1 Osa01LNG0034700 29736362-29739447 long non-coding(lnc) isoforms of known genes 2114 46.83065 7
Osa01LNT0034700.1 1 Osa01LNG0034700 29736362-29739447 long non-coding(lnc) isoforms of known genes 1294 50.07728 8
Osa01LNT0034900.1 1 Osa01LNG0034900 29770183-29773350 long non-coding(lnc) isoforms of known genes 1357 53.35298 6
Osa01LNT0035000.2 1 Osa01LNG0035000 29842914-29846816 long non-coding(lnc) isoforms of known genes 2237 47.6084 6
Osa01LNT0035000.1 1 Osa01LNG0035000 29842914-29846816 long non-coding(lnc) isoforms of known genes 2921 44.81342 6
Osa01LNT0003600.1 1 Osa01LNG0003600 2986329-2989246 long non-coding(lnc) isoforms of known genes 1563 54.57454 7
Osa01LNT0003600.2 1 Osa01LNG0003600 2986329-2989246 long non-coding(lnc) isoforms of known genes 1573 54.60903 7
Osa01LNT0035100.1 1 Osa01LNG0035100 29967316-29969095 long non-coding(lnc) isoforms of known genes 744 43.8172 6
Osa01LNT0035200.1 1 Osa01LNG0035200 29967611-29969987 long non-coding(lnc) isoforms of known genes 1611 40.90627 3
Osa01LNT0035300.1 1 Osa01LNG0035300 30086355-30088871 sense lncRNA 1122 62.83422 2
Osa01LNT0035400.1 1 Osa01LNG0035400 30219829-30220046 intronic lncRNA 218 27.52294 1
Osa01LNT0035500.1 1 Osa01LNG0035500 30298577-30299371 intergenetic lncRNA (lincRNA) 795 52.45283 1
Osa01LNT0035600.1 1 Osa01LNG0035600 30346421-30349017 long non-coding(lnc) isoforms of known genes 751 60.05326 6
Osa01LNT0035700.1 1 Osa01LNG0035700 30372304-30376349 long non-coding(lnc) isoforms of known genes 1646 41.7983 5
Osa01LNT0035800.1 1 Osa01LNG0035800 30401373-30403740 sense lncRNA 1907 45.30676 2
Osa01LNT0035900.1 1 Osa01LNG0035900 30490728-30497222 sense lncRNA 3981 55.11178 6
Osa01LNT0036000.1 1 Osa01LNG0036000 30593441-30598640 long non-coding(lnc) isoforms of known genes 2747 44.63051 11
Osa01LNT0036000.2 1 Osa01LNG0036000 30593441-30598640 long non-coding(lnc) isoforms of known genes 2793 44.57573 11
Osa01LNT0036100.1 1 Osa01LNG0036100 30628756-30629202 intergenetic lncRNA (lincRNA) 369 62.33062 2
Osa01LNT0036200.1 1 Osa01LNG0036200 30775140-30779230 long non-coding(lnc) isoforms of known genes 2058 46.45287 13
Osa01LNT0036300.1 1 Osa01LNG0036300 30788662-30796676 long non-coding(lnc) isoforms of known genes 2301 45.93655 14
Osa01LNT0460700.1 1 Osa01LNG0460700 30815215-30815469 intergenetic lncRNA (lincRNA) 255 29.41176 1
Osa01LNT0036400.1 1 Osa01LNG0036400 30840199-30845944 sense lncRNA 2687 45.47823 14
Osa01LNT0036400.2 1 Osa01LNG0036400 30840199-30845944 sense lncRNA 2580 45.34884 15
Osa01LNT0036500.1 1 Osa01LNG0036500 30909436-30918005 long non-coding(lnc) isoforms of known genes 931 42.64232 2
Osa01LNT0036600.1 1 Osa01LNG0036600 30923013-30927457 long non-coding(lnc) isoforms of known genes 2352 58.29082 12
Osa01LNT0460800.1 1 Osa01LNG0460800 30928195-30928449 intergenetic lncRNA (lincRNA) 255 28.62745 1
Osa01LNT0460900.1 1 Osa01LNG0460900 30928195-30928449 intergenetic lncRNA (lincRNA) 255 28.62745 1
Osa01LNT0036700.1 1 Osa01LNG0036700 30933396-30937884 long non-coding(lnc) isoforms of known genes 2942 54.55472 12
Osa01LNT0036800.1 1 Osa01LNG0036800 30982336-30985375 sense lncRNA 1094 43.14442 2
Osa01LNT0003700.1 1 Osa01LNG0003700 3099953-3105226 long non-coding(lnc) isoforms of known genes 2193 45.59964 8
Osa01LNT0036900.1 1 Osa01LNG0036900 31009626-31017514 long non-coding(lnc) isoforms of known genes 1955 48.18414 11
Osa01LNT0037000.1 1 Osa01LNG0037000 31070191-31076274 long non-coding(lnc) isoforms of known genes 1585 47.00315 15
Osa01LNT0003800.2 1 Osa01LNG0003800 3108149-3113940 long non-coding(lnc) isoforms of known genes 2285 41.88184 10
Osa01LNT0003800.1 1 Osa01LNG0003800 3108149-3113940 long non-coding(lnc) isoforms of known genes 1974 47.3151 13
Osa01LNT0037100.1 1 Osa01LNG0037100 31111317-31116050 long non-coding(lnc) isoforms of known genes 2555 49.5499 16
Osa01LNT0037200.1 1 Osa01LNG0037200 31120708-31132724 long non-coding(lnc) isoforms of known genes 2495 47.69539 21
Osa01LNT0037300.1 1 Osa01LNG0037300 31252512-31254894 long non-coding(lnc) isoforms of known genes 1882 59.51116 5
Osa01LNT0461000.1 1 Osa01LNG0461000 31412872-31413094 intergenetic lncRNA (lincRNA) 223 29.14798 1
Osa01LNT0461100.1 1 Osa01LNG0461100 31412872-31413094 intergenetic lncRNA (lincRNA) 223 29.14798 1
Osa01LNT0037400.1 1 Osa01LNG0037400 31416445-31416849 intergenetic lncRNA (lincRNA) 405 44.93827 1
Osa01LNT0037500.1 1 Osa01LNG0037500 31561394-31564137 long non-coding(lnc) isoforms of known genes 1100 46.90909 6
Osa01LNT0037600.1 1 Osa01LNG0037600 31592116-31597002 long non-coding(lnc) isoforms of known genes 2317 51.70479 4
Osa01LNT0037700.1 1 Osa01LNG0037700 31608109-31609696 long non-coding(lnc) isoforms of known genes 1066 47.37336 2
Osa01LNT0037800.1 1 Osa01LNG0037800 31635593-31638453 long non-coding(lnc) isoforms of known genes 696 55.02874 3
Osa01LNT0037800.2 1 Osa01LNG0037800 31635593-31638453 long non-coding(lnc) isoforms of known genes 1286 46.42302 4
Osa01LNT0037900.1 1 Osa01LNG0037900 31651616-31656431 long non-coding(lnc) isoforms of known genes 2125 52.09412 3
Osa01LNT0038000.1 1 Osa01LNG0038000 31672136-31676341 intergenetic lncRNA (lincRNA) 2288 44.05594 5
Osa01LNT0038000.2 1 Osa01LNG0038000 31672136-31676341 intergenetic lncRNA (lincRNA) 3194 43.95742 6