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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0001900.1 1 Osa01LNG0001900 1926905-1927547 intergenetic lncRNA (lincRNA) 643 55.83204 1
Osa01LNT0022000.1 1 Osa01LNG0022000 19303393-19319879 long non-coding(lnc) isoforms of known genes 5296 41.61631 37
Osa01LNT0022100.1 1 Osa01LNG0022100 19454154-19458225 long non-coding(lnc) isoforms of known genes 3339 47.88859 8
Osa01LNT0022100.2 1 Osa01LNG0022100 19454154-19458225 long non-coding(lnc) isoforms of known genes 2862 48.25297 8
Osa01LNT0022200.1 1 Osa01LNG0022200 19469262-19477590 long non-coding(lnc) isoforms of known genes 1906 45.12067 14
Osa01LNT0002000.1 1 Osa01LNG0002000 1957495-1961530 Antisense lncRNA 1345 57.24907 2
Osa01LNT0002100.1 1 Osa01LNG0002100 1957847-1962653 long non-coding(lnc) isoforms of known genes 2409 48.15276 4
Osa01LNT0022300.1 1 Osa01LNG0022300 19578486-19579041 intergenetic lncRNA (lincRNA) 556 59.53237 1
Osa01LNT0458600.1 1 Osa01LNG0458600 19738355-19738629 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa01LNT0458500.1 1 Osa01LNG0458500 19738355-19738629 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa01LNT0458700.1 1 Osa01LNG0458700 19822898-19823148 intergenetic lncRNA (lincRNA) 251 27.49004 1
Osa01LNT0458800.1 1 Osa01LNG0458800 19822898-19823148 intergenetic lncRNA (lincRNA) 251 27.49004 1
Osa01LNT0458900.1 1 Osa01LNG0458900 19823216-19823459 intergenetic lncRNA (lincRNA) 244 25.81967 1
Osa01LNT0022400.1 1 Osa01LNG0022400 19845644-19848399 sense lncRNA 1281 52.0687 4
Osa01LNT0022600.1 1 Osa01LNG0022600 19962930-19970099 long non-coding(lnc) isoforms of known genes 2417 47.78651 12
Osa01LNT0022500.1 1 Osa01LNG0022500 19988588-19988884 intergenetic lncRNA (lincRNA) 297 46.46465 1
Osa01LNT0459000.1 1 Osa01LNG0459000 20068894-20069151 intergenetic lncRNA (lincRNA) 258 26.35659 1
Osa01LNT0459100.1 1 Osa01LNG0459100 20068894-20069151 intergenetic lncRNA (lincRNA) 258 26.35659 1
Osa01LNT0022800.1 1 Osa01LNG0022800 20197318-20199817 sense lncRNA 2412 39.09619 2
Osa01LNT0022700.1 1 Osa01LNG0022700 20296917-20302467 long non-coding(lnc) isoforms of known genes 1141 43.29535 8
Osa01LNT0022900.1 1 Osa01LNG0022900 20351629-20364373 long non-coding(lnc) isoforms of known genes 3924 44.92864 12
Osa01LNT0023000.1 1 Osa01LNG0023000 20380989-20384879 long non-coding(lnc) isoforms of known genes 1943 49.1508 4
Osa01LNT0023200.1 1 Osa01LNG0023200 20407488-20414976 long non-coding(lnc) isoforms of known genes 2707 39.00997 15
Osa01LNT0023100.1 1 Osa01LNG0023100 20450218-20450982 intergenetic lncRNA (lincRNA) 765 48.36601 1
Osa01LNT0002200.1 1 Osa01LNG0002200 2046218-2053056 long non-coding(lnc) isoforms of known genes 894 52.57271 2
Osa01LNT0023300.1 1 Osa01LNG0023300 20464727-20469249 long non-coding(lnc) isoforms of known genes 3201 47.64136 6
Osa01LNT0023400.1 1 Osa01LNG0023400 20489229-20501754 long non-coding(lnc) isoforms of known genes 2621 47.00496 19
Osa01LNT0023400.2 1 Osa01LNG0023400 20489229-20501754 long non-coding(lnc) isoforms of known genes 2644 46.78517 19
Osa01LNT0023700.1 1 Osa01LNG0023700 20717034-20727200 long non-coding(lnc) isoforms of known genes 5250 41.25714 15
Osa01LNT0023800.1 1 Osa01LNG0023800 20726005-20730085 long non-coding(lnc) isoforms of known genes 2773 49.87378 3
Osa01LNT0023500.2 1 Osa01LNG0023500 20731076-20733672 intergenetic lncRNA (lincRNA) 1596 41.91729 4
Osa01LNT0023500.1 1 Osa01LNG0023500 20731076-20733672 intergenetic lncRNA (lincRNA) 2061 40.65987 3
Osa01LNT0023600.1 1 Osa01LNG0023600 20746789-20750441 long non-coding(lnc) isoforms of known genes 2308 45.01733 4
Osa01LNT0002300.1 1 Osa01LNG0002300 2074795-2077891 long non-coding(lnc) isoforms of known genes 2310 49.17749 6
Osa01LNT0023900.1 1 Osa01LNG0023900 20950272-20955520 long non-coding(lnc) isoforms of known genes 1246 53.77207 5
Osa01LNT0024000.1 1 Osa01LNG0024000 21038211-21039165 Antisense lncRNA 770 49.74026 2
Osa01LNT0454400.1 1 Osa01LNG0454400 2130008-2130240 intergenetic lncRNA (lincRNA) 233 23.17597 1
Osa01LNT0024400.1 1 Osa01LNG0024400 21414031-21414589 intergenetic lncRNA (lincRNA) 559 44.36494 1
Osa01LNT0024100.1 1 Osa01LNG0024100 21447489-21450077 long non-coding(lnc) isoforms of known genes 1000 49.7 5
Osa01LNT0024200.1 1 Osa01LNG0024200 21534121-21537684 long non-coding(lnc) isoforms of known genes 1068 50.37453 6
Osa01LNT0024300.1 1 Osa01LNG0024300 21623761-21626735 long non-coding(lnc) isoforms of known genes 848 54.83491 5
Osa01LNT0024500.1 1 Osa01LNG0024500 21637202-21643059 long non-coding(lnc) isoforms of known genes 2609 48.8693 4
Osa01LNT0024600.1 1 Osa01LNG0024600 21687373-21689620 sense lncRNA 2139 61.57083 2
Osa01LNT0024700.1 1 Osa01LNG0024700 21922198-21923969 sense lncRNA 1312 41.23476 2
Osa01LNT0024800.2 1 Osa01LNG0024800 22021849-22027269 long non-coding(lnc) isoforms of known genes 1869 52.86249 7
Osa01LNT0024800.1 1 Osa01LNG0024800 22021849-22027269 long non-coding(lnc) isoforms of known genes 1808 53.20796 7
Osa01LNT0024900.1 1 Osa01LNG0024900 22088204-22091018 long non-coding(lnc) isoforms of known genes 1257 55.13126 11
Osa01LNT0025000.1 1 Osa01LNG0025000 22423500-22423747 intergenetic lncRNA (lincRNA) 248 61.29032 1
Osa01LNT0025100.1 1 Osa01LNG0025100 22439040-22441966 long non-coding(lnc) isoforms of known genes 1412 43.4136 8
Osa01LNT0025100.2 1 Osa01LNG0025100 22439040-22441966 long non-coding(lnc) isoforms of known genes 1299 43.64896 8