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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0273500.1 4 Osa04LNG0273500 26027373-26035555 long non-coding(lnc) isoforms of known genes 1595 48.40125 9
Osa04LNT0273200.1 4 Osa04LNG0273200 26036828-26041432 long non-coding(lnc) isoforms of known genes 2218 44.90532 6
Osa04LNT0273300.1 4 Osa04LNG0273300 26103742-26106004 sense lncRNA 701 55.3495 2
Osa04LNT0273600.1 4 Osa04LNG0273600 26168663-26173714 long non-coding(lnc) isoforms of known genes 1647 47.54098 10
Osa04LNT0494800.1 4 Osa04LNG0494800 26209099-26209372 intergenetic lncRNA (lincRNA) 274 28.10219 1
Osa04LNT0494900.1 4 Osa04LNG0494900 26321747-26321951 intergenetic lncRNA (lincRNA) 205 22.92683 1
Osa04LNT0273700.1 4 Osa04LNG0273700 26368697-26371868 long non-coding(lnc) isoforms of known genes 1639 46.73581 7
Osa04LNT0484100.1 4 Osa04LNG0484100 2650138-2650366 intergenetic lncRNA (lincRNA) 229 41.04803 1
Osa04LNT0484300.1 4 Osa04LNG0484300 2650578-2650851 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa04LNT0484200.1 4 Osa04LNG0484200 2650578-2650851 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa04LNT0484400.1 4 Osa04LNG0484400 2650920-2651156 intergenetic lncRNA (lincRNA) 237 28.27004 1
Osa04LNT0273800.2 4 Osa04LNG0273800 26543241-26546917 long non-coding(lnc) isoforms of known genes 2731 50.38447 4
Osa04LNT0273800.1 4 Osa04LNG0273800 26543241-26546917 long non-coding(lnc) isoforms of known genes 3503 47.8447 3
Osa04LNT0273900.2 4 Osa04LNG0273900 26590637-26592402 long non-coding(lnc) isoforms of known genes 1232 54.46429 4
Osa04LNT0273900.1 4 Osa04LNG0273900 26590637-26592402 long non-coding(lnc) isoforms of known genes 1398 50.71531 4
Osa04LNT0274000.1 4 Osa04LNG0274000 26712651-26715739 long non-coding(lnc) isoforms of known genes 1394 48.2066 8
Osa04LNT0274000.2 4 Osa04LNG0274000 26712651-26715739 long non-coding(lnc) isoforms of known genes 1402 47.8602 8
Osa04LNT0495000.1 4 Osa04LNG0495000 26760861-26761068 intergenetic lncRNA (lincRNA) 208 42.78846 1
Osa04LNT0274100.1 4 Osa04LNG0274100 26896497-26897762 intergenetic lncRNA (lincRNA) 1266 55.52923 1
Osa04LNT0482300.1 4 Osa04LNG0482300 269309-269583 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa04LNT0482200.1 4 Osa04LNG0482200 269309-269583 intergenetic lncRNA (lincRNA) 275 27.27273 1
Osa04LNT0274200.1 4 Osa04LNG0274200 26962438-26967759 long non-coding(lnc) isoforms of known genes 3483 46.08096 14
Osa04LNT0274300.2 4 Osa04LNG0274300 27077434-27081854 long non-coding(lnc) isoforms of known genes 2976 59.47581 3
Osa04LNT0274300.1 4 Osa04LNG0274300 27077434-27081854 long non-coding(lnc) isoforms of known genes 3415 62.81113 3
Osa04LNT0274400.2 4 Osa04LNG0274400 27154339-27158934 long non-coding(lnc) isoforms of known genes 2675 48.85981 8
Osa04LNT0274400.1 4 Osa04LNG0274400 27154339-27158934 long non-coding(lnc) isoforms of known genes 3039 48.20665 7
Osa04LNT0274500.1 4 Osa04LNG0274500 27183981-27188083 long non-coding(lnc) isoforms of known genes 3139 59.25454 7
Osa04LNT0274600.1 4 Osa04LNG0274600 27318763-27323212 long non-coding(lnc) isoforms of known genes 1329 46.80211 5
Osa04LNT0274700.1 4 Osa04LNG0274700 27341443-27343906 intergenetic lncRNA (lincRNA) 884 57.01357 5
Osa04LNT0495100.1 4 Osa04LNG0495100 27406629-27406856 intergenetic lncRNA (lincRNA) 228 27.19298 1
Osa04LNT0274800.1 4 Osa04LNG0274800 27460855-27463150 sense lncRNA 1064 50.18797 2
Osa04LNT0274900.1 4 Osa04LNG0274900 27494477-27497968 long non-coding(lnc) isoforms of known genes 1473 49.76239 7
Osa04LNT0275000.1 4 Osa04LNG0275000 27570555-27572699 long non-coding(lnc) isoforms of known genes 1899 49.86835 3
Osa04LNT0275100.2 4 Osa04LNG0275100 27608423-27612487 long non-coding(lnc) isoforms of known genes 2262 47.12644 8
Osa04LNT0275100.1 4 Osa04LNG0275100 27608423-27612487 long non-coding(lnc) isoforms of known genes 2216 47.65343 9
Osa04LNT0275200.1 4 Osa04LNG0275200 27687875-27688304 intergenetic lncRNA (lincRNA) 430 51.16279 1
Osa04LNT0275300.1 4 Osa04LNG0275300 27725967-27729733 long non-coding(lnc) isoforms of known genes 1740 42.24138 11
Osa04LNT0247700.1 4 Osa04LNG0247700 2778944-2780564 intergenetic lncRNA (lincRNA) 357 52.66106 3
Osa04LNT0275500.1 4 Osa04LNG0275500 27795857-27815440 long non-coding(lnc) isoforms of known genes 8683 44.85777 31
Osa04LNT0275400.1 4 Osa04LNG0275400 27820669-27823138 long non-coding(lnc) isoforms of known genes 996 49.59839 5
Osa04LNT0275600.1 4 Osa04LNG0275600 27863690-27866585 long non-coding(lnc) isoforms of known genes 1821 45.79901 3
Osa04LNT0275700.1 4 Osa04LNG0275700 28026561-28030509 long non-coding(lnc) isoforms of known genes 1808 50.5531 10
Osa04LNT0275800.1 4 Osa04LNG0275800 28174289-28175731 intergenetic lncRNA (lincRNA) 1337 47.04562 2
Osa04LNT0484500.1 4 Osa04LNG0484500 2818000-2818227 intergenetic lncRNA (lincRNA) 228 28.07018 1
Osa04LNT0275900.1 4 Osa04LNG0275900 28183338-28184434 long non-coding(lnc) isoforms of known genes 424 43.86792 2
Osa04LNT0276000.1 4 Osa04LNG0276000 28192341-28196104 long non-coding(lnc) isoforms of known genes 1817 45.95487 9
Osa04LNT0276000.2 4 Osa04LNG0276000 28192341-28196104 long non-coding(lnc) isoforms of known genes 1916 45.72025 9
Osa04LNT0276100.1 4 Osa04LNG0276100 28224389-28240959 long non-coding(lnc) isoforms of known genes 4544 43.06778 39
Osa04LNT0276200.1 4 Osa04LNG0276200 28296504-28305349 long non-coding(lnc) isoforms of known genes 4244 42.57776 23
Osa04LNT0276300.1 4 Osa04LNG0276300 28372875-28376709 sense lncRNA 1399 46.10436 2
Osa04LNT0276300.2 4 Osa04LNG0276300 28372875-28376709 sense lncRNA 742 52.56065 2
Osa04LNT0276400.1 4 Osa04LNG0276400 28484047-28494474 long non-coding(lnc) isoforms of known genes 4324 42.6457 15
Osa04LNT0276400.2 4 Osa04LNG0276400 28484047-28494474 long non-coding(lnc) isoforms of known genes 4392 42.62295 14
Osa04LNT0276500.1 4 Osa04LNG0276500 28575712-28591277 long non-coding(lnc) isoforms of known genes 4886 42.81621 28
Osa04LNT0495200.1 4 Osa04LNG0495200 28906572-28906847 intergenetic lncRNA (lincRNA) 276 27.17391 1
Osa04LNT0495300.1 4 Osa04LNG0495300 28906572-28906847 intergenetic lncRNA (lincRNA) 276 27.17391 1
Osa04LNT0276600.1 4 Osa04LNG0276600 29115011-29119638 long non-coding(lnc) isoforms of known genes 1386 49.4228 9
Osa04LNT0276700.1 4 Osa04LNG0276700 29163356-29165121 long non-coding(lnc) isoforms of known genes 656 43.44512 4
Osa04LNT0276700.2 4 Osa04LNG0276700 29163356-29165121 long non-coding(lnc) isoforms of known genes 682 43.40176 4
Osa04LNT0276900.1 4 Osa04LNG0276900 29437923-29440446 long non-coding(lnc) isoforms of known genes 1559 40.47466 5
Osa04LNT0276800.1 4 Osa04LNG0276800 29453028-29454151 intergenetic lncRNA (lincRNA) 885 45.76271 2
Osa04LNT0277000.1 4 Osa04LNG0277000 29515251-29518222 long non-coding(lnc) isoforms of known genes 1529 49.70569 5
Osa04LNT0277100.1 4 Osa04LNG0277100 29565754-29570387 long non-coding(lnc) isoforms of known genes 3323 49.35299 7
Osa04LNT0277300.1 4 Osa04LNG0277300 29583842-29585662 long non-coding(lnc) isoforms of known genes 1576 48.1599 4
Osa04LNT0277300.2 4 Osa04LNG0277300 29583842-29585662 long non-coding(lnc) isoforms of known genes 1112 52.51799 5
Osa04LNT0277200.1 4 Osa04LNG0277200 29588421-29590515 long non-coding(lnc) isoforms of known genes 680 56.47059 3
Osa04LNT0277400.1 4 Osa04LNG0277400 29666130-29667274 intergenetic lncRNA (lincRNA) 1145 54.49782 1
Osa04LNT0277500.1 4 Osa04LNG0277500 29675744-29681095 intergenetic lncRNA (lincRNA) 3748 44.07684 8
Osa04LNT0277600.1 4 Osa04LNG0277600 29969365-29972655 long non-coding(lnc) isoforms of known genes 1971 44.2415 10
Osa04LNT0277700.1 4 Osa04LNG0277700 30021081-30021753 intergenetic lncRNA (lincRNA) 471 58.81104 3
Osa04LNT0277800.1 4 Osa04LNG0277800 30046907-30050579 long non-coding(lnc) isoforms of known genes 1311 44.54615 5
Osa04LNT0277900.2 4 Osa04LNG0277900 30090821-30096709 long non-coding(lnc) isoforms of known genes 941 50.37194 3
Osa04LNT0277900.1 4 Osa04LNG0277900 30090821-30096709 long non-coding(lnc) isoforms of known genes 1131 48.18744 4
Osa04LNT0278000.1 4 Osa04LNG0278000 30366156-30368366 long non-coding(lnc) isoforms of known genes 722 58.44875 5
Osa04LNT0278100.1 4 Osa04LNG0278100 30374708-30377015 long non-coding(lnc) isoforms of known genes 612 45.42484 5
Osa04LNT0278300.1 4 Osa04LNG0278300 30388420-30390045 long non-coding(lnc) isoforms of known genes 1103 45.96555 5
Osa04LNT0278200.1 4 Osa04LNG0278200 30393180-30395724 sense lncRNA 1103 47.86945 2
Osa04LNT0278400.1 4 Osa04LNG0278400 30413491-30415745 long non-coding(lnc) isoforms of known genes 1411 51.8781 6
Osa04LNT0278500.1 4 Osa04LNG0278500 30416463-30424037 long non-coding(lnc) isoforms of known genes 3574 48.15333 17
Osa04LNT0278600.1 4 Osa04LNG0278600 30446412-30451385 long non-coding(lnc) isoforms of known genes 1063 53.80997 3
Osa04LNT0278800.1 4 Osa04LNG0278800 30463872-30473000 long non-coding(lnc) isoforms of known genes 3551 42.91749 22
Osa04LNT0278700.1 4 Osa04LNG0278700 30510983-30513871 long non-coding(lnc) isoforms of known genes 1949 48.33248 4
Osa04LNT0495400.1 4 Osa04LNG0495400 30618558-30618785 intergenetic lncRNA (lincRNA) 228 42.98246 1
Osa04LNT0484600.1 4 Osa04LNG0484600 3062826-3063067 intergenetic lncRNA (lincRNA) 242 23.55372 1
Osa04LNT0279000.1 4 Osa04LNG0279000 30629734-30638844 sense lncRNA 4112 47.15467 27
Osa04LNT0278900.1 4 Osa04LNG0278900 30642129-30645811 long non-coding(lnc) isoforms of known genes 2188 48.44607 5
Osa04LNT0279100.1 4 Osa04LNG0279100 30690638-30696668 long non-coding(lnc) isoforms of known genes 1930 45.28497 11
Osa04LNT0279100.2 4 Osa04LNG0279100 30690638-30696668 long non-coding(lnc) isoforms of known genes 1984 45.3125 11
Osa04LNT0279200.1 4 Osa04LNG0279200 30735429-30736297 Antisense lncRNA 762 43.83202 2
Osa04LNT0279300.1 4 Osa04LNG0279300 30764576-30770580 long non-coding(lnc) isoforms of known genes 1844 52.54881 13
Osa04LNT0279400.1 4 Osa04LNG0279400 30798891-30804829 long non-coding(lnc) isoforms of known genes 3338 48.53206 13
Osa04LNT0279500.1 4 Osa04LNG0279500 30875264-30879479 long non-coding(lnc) isoforms of known genes 3667 42.70521 4
Osa04LNT0279700.1 4 Osa04LNG0279700 30888156-30905210 long non-coding(lnc) isoforms of known genes 3101 43.27636 26
Osa04LNT0279800.1 4 Osa04LNG0279800 30905363-30907741 intergenetic lncRNA (lincRNA) 1334 60.34483 6
Osa04LNT0279600.2 4 Osa04LNG0279600 30908540-30913698 long non-coding(lnc) isoforms of known genes 3855 48.79377 8
Osa04LNT0279600.1 4 Osa04LNG0279600 30908540-30913698 long non-coding(lnc) isoforms of known genes 3759 49.24182 8
Osa04LNT0279900.2 4 Osa04LNG0279900 30920407-30925664 long non-coding(lnc) isoforms of known genes 3137 52.75741 9
Osa04LNT0279900.1 4 Osa04LNG0279900 30920407-30925664 long non-coding(lnc) isoforms of known genes 3205 52.35569 9
Osa04LNT0280000.1 4 Osa04LNG0280000 30945227-30948686 long non-coding(lnc) isoforms of known genes 1288 47.59317 10
Osa04LNT0280100.1 4 Osa04LNG0280100 30952520-30957572 long non-coding(lnc) isoforms of known genes 3470 45.27378 9