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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0119400.2 12 Osa12LNG0119400 5042596-5044626 long non-coding(lnc) isoforms of known genes 1347 42.09354 6
Osa12LNT0119500.1 12 Osa12LNG0119500 5099050-5102457 long non-coding(lnc) isoforms of known genes 2777 47.20922 4
Osa12LNT0119600.1 12 Osa12LNG0119600 5165422-5168654 intergenetic lncRNA (lincRNA) 2914 39.91078 4
Osa12LNT0112300.1 12 Osa12LNG0112300 535944-540335 long non-coding(lnc) isoforms of known genes 3293 48.70938 4
Osa12LNT0119700.2 12 Osa12LNG0119700 5391987-5394918 long non-coding(lnc) isoforms of known genes 1517 51.08767 9
Osa12LNT0119700.1 12 Osa12LNG0119700 5391987-5394918 long non-coding(lnc) isoforms of known genes 1522 51.05125 9
Osa12LNT0559700.1 12 Osa12LNG0559700 5493332-5493542 intergenetic lncRNA (lincRNA) 211 45.97156 1
Osa12LNT0119800.1 12 Osa12LNG0119800 5644778-5645645 intergenetic lncRNA (lincRNA) 868 38.82488 1
Osa12LNT0119900.1 12 Osa12LNG0119900 5657060-5658186 intergenetic lncRNA (lincRNA) 1127 35.315 1
Osa12LNT0120000.1 12 Osa12LNG0120000 5747608-5749538 intergenetic lncRNA (lincRNA) 1541 40.94744 2
Osa12LNT0559800.1 12 Osa12LNG0559800 5781305-5781549 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa12LNT0559900.1 12 Osa12LNG0559900 5781305-5781549 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa12LNT0120100.1 12 Osa12LNG0120100 5855232-5855620 intergenetic lncRNA (lincRNA) 298 59.0604 2
Osa12LNT0112400.1 12 Osa12LNG0112400 616537-617614 long non-coding(lnc) isoforms of known genes 644 46.58385 3
Osa12LNT0120200.1 12 Osa12LNG0120200 6399037-6399620 intergenetic lncRNA (lincRNA) 584 47.26027 1
Osa12LNT0560000.1 12 Osa12LNG0560000 6514247-6514521 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0560100.1 12 Osa12LNG0560100 6514247-6514521 intergenetic lncRNA (lincRNA) 275 26.54545 1
Osa12LNT0120300.1 12 Osa12LNG0120300 6549518-6550237 intergenetic lncRNA (lincRNA) 720 45.0 1
Osa12LNT0120400.1 12 Osa12LNG0120400 6567109-6567792 intergenetic lncRNA (lincRNA) 684 45.46784 1
Osa12LNT0560200.1 12 Osa12LNG0560200 6578056-6578310 intergenetic lncRNA (lincRNA) 255 28.23529 1
Osa12LNT0120500.1 12 Osa12LNG0120500 6729606-6734439 long non-coding(lnc) isoforms of known genes 2918 50.17135 8
Osa12LNT0560300.1 12 Osa12LNG0560300 6743910-6744123 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa12LNT0120600.1 12 Osa12LNG0120600 6799622-6806553 long non-coding(lnc) isoforms of known genes 1453 47.96972 10
Osa12LNT0120700.1 12 Osa12LNG0120700 6892315-6893811 intronic lncRNA 715 42.51748 6
Osa12LNT0120700.3 12 Osa12LNG0120700 6892315-6893811 intronic lncRNA 737 42.33379 6
Osa12LNT0120700.2 12 Osa12LNG0120700 6892315-6893811 intronic lncRNA 723 42.32365 6
Osa12LNT0120800.1 12 Osa12LNG0120800 6985010-6990105 long non-coding(lnc) isoforms of known genes 4290 46.24709 3
Osa12LNT0120900.1 12 Osa12LNG0120900 7017361-7022664 long non-coding(lnc) isoforms of known genes 2475 47.67677 15
Osa12LNT0121000.1 12 Osa12LNG0121000 7028519-7030635 long non-coding(lnc) isoforms of known genes 1144 54.63287 3
Osa12LNT0560400.1 12 Osa12LNG0560400 7065693-7065993 intergenetic lncRNA (lincRNA) 301 28.57143 1
Osa12LNT0112500.1 12 Osa12LNG0112500 707630-715024 long non-coding(lnc) isoforms of known genes 3094 44.63478 9
Osa12LNT0112500.2 12 Osa12LNG0112500 707630-715024 long non-coding(lnc) isoforms of known genes 3084 44.74708 9
Osa12LNT0560500.1 12 Osa12LNG0560500 7077967-7078174 intergenetic lncRNA (lincRNA) 208 49.51923 1
Osa12LNT0121100.1 12 Osa12LNG0121100 7103232-7106389 long non-coding(lnc) isoforms of known genes 1562 43.79001 2
Osa12LNT0121200.1 12 Osa12LNG0121200 7385218-7386021 intergenetic lncRNA (lincRNA) 804 58.45771 1
Osa12LNT0121300.1 12 Osa12LNG0121300 7409322-7414407 long non-coding(lnc) isoforms of known genes 3261 42.28764 8
Osa12LNT0121400.1 12 Osa12LNG0121400 7421482-7421997 intronic lncRNA 516 24.4186 1
Osa12LNT0121500.1 12 Osa12LNG0121500 7441098-7447628 long non-coding(lnc) isoforms of known genes 3400 46.08824 9
Osa12LNT0121600.1 12 Osa12LNG0121600 7506170-7508955 intergenetic lncRNA (lincRNA) 1868 41.75589 3
Osa12LNT0121700.1 12 Osa12LNG0121700 7509163-7510083 intergenetic lncRNA (lincRNA) 921 49.29425 1
Osa12LNT0121800.1 12 Osa12LNG0121800 7557087-7557385 intergenetic lncRNA (lincRNA) 299 74.24749 1
Osa12LNT0112600.1 12 Osa12LNG0112600 766441-768578 long non-coding(lnc) isoforms of known genes 1554 43.56499 4
Osa12LNT0121900.1 12 Osa12LNG0121900 7688973-7699212 long non-coding(lnc) isoforms of known genes 4395 44.23208 7
Osa12LNT0122100.1 12 Osa12LNG0122100 7731409-7749313 sense lncRNA 4854 46.47713 24
Osa12LNT0122000.1 12 Osa12LNG0122000 7849031-7849545 intergenetic lncRNA (lincRNA) 515 47.57282 1
Osa12LNT0112700.1 12 Osa12LNG0112700 795492-797705 long non-coding(lnc) isoforms of known genes 1681 47.88816 2
Osa12LNT0560600.1 12 Osa12LNG0560600 8131192-8131448 intergenetic lncRNA (lincRNA) 257 27.23735 1
Osa12LNT0112900.1 12 Osa12LNG0112900 817004-823035 long non-coding(lnc) isoforms of known genes 1248 47.11538 5
Osa12LNT0560700.1 12 Osa12LNG0560700 8324297-8324566 intergenetic lncRNA (lincRNA) 270 27.40741 1
Osa12LNT0560800.1 12 Osa12LNG0560800 8324297-8324566 intergenetic lncRNA (lincRNA) 270 27.40741 1