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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0287400.1 4 Osa04LNG0287400 34245787-34246661 long non-coding(lnc) isoforms of known genes 625 42.08 4
Osa04LNT0287600.1 4 Osa04LNG0287600 34278549-34285845 long non-coding(lnc) isoforms of known genes 3200 50.0625 16
Osa04LNT0287600.2 4 Osa04LNG0287600 34278549-34285845 long non-coding(lnc) isoforms of known genes 4814 45.01454 13
Osa04LNT0287500.1 4 Osa04LNG0287500 34314400-34320079 long non-coding(lnc) isoforms of known genes 4487 46.11099 8
Osa04LNT0287500.2 4 Osa04LNG0287500 34314400-34320079 long non-coding(lnc) isoforms of known genes 3579 47.89047 9
Osa04LNT0287700.1 4 Osa04LNG0287700 34321330-34325258 long non-coding(lnc) isoforms of known genes 1138 47.53954 7
Osa04LNT0287800.2 4 Osa04LNG0287800 34346576-34351760 long non-coding(lnc) isoforms of known genes 2684 44.82116 7
Osa04LNT0287800.3 4 Osa04LNG0287800 34346576-34351760 long non-coding(lnc) isoforms of known genes 3713 41.71829 6
Osa04LNT0287800.1 4 Osa04LNG0287800 34346576-34351760 long non-coding(lnc) isoforms of known genes 1835 49.20981 8
Osa04LNT0287900.1 4 Osa04LNG0287900 34457427-34463720 long non-coding(lnc) isoforms of known genes 4983 43.528 6
Osa04LNT0288000.1 4 Osa04LNG0288000 34508711-34513346 long non-coding(lnc) isoforms of known genes 3081 48.32846 12
Osa04LNT0288000.2 4 Osa04LNG0288000 34508711-34513346 long non-coding(lnc) isoforms of known genes 2391 44.33292 9
Osa04LNT0288100.1 4 Osa04LNG0288100 34613751-34622752 long non-coding(lnc) isoforms of known genes 3500 44.54286 18
Osa04LNT0288200.1 4 Osa04LNG0288200 34628327-34631268 long non-coding(lnc) isoforms of known genes 1038 45.5684 7
Osa04LNT0288300.1 4 Osa04LNG0288300 34717887-34721250 long non-coding(lnc) isoforms of known genes 1536 46.9401 5
Osa04LNT0288400.1 4 Osa04LNG0288400 34780497-34785326 long non-coding(lnc) isoforms of known genes 2618 45.68373 11
Osa04LNT0288500.1 4 Osa04LNG0288500 34782358-34782879 long non-coding(lnc) isoforms of known genes 410 40.0 2
Osa04LNT0288700.1 4 Osa04LNG0288700 34791847-34800297 long non-coding(lnc) isoforms of known genes 2208 43.16123 10
Osa04LNT0288600.1 4 Osa04LNG0288600 34810658-34813508 long non-coding(lnc) isoforms of known genes 1987 49.67287 5
Osa04LNT0288800.1 4 Osa04LNG0288800 34852968-34859005 sense lncRNA 5904 44.49526 2
Osa04LNT0288900.1 4 Osa04LNG0288900 34870064-34877133 long non-coding(lnc) isoforms of known genes 3732 50.0268 13
Osa04LNT0289000.1 4 Osa04LNG0289000 35013496-35020120 long non-coding(lnc) isoforms of known genes 2272 41.94542 13
Osa04LNT0289100.2 4 Osa04LNG0289100 35089396-35091243 long non-coding(lnc) isoforms of known genes 1041 52.92988 8
Osa04LNT0289100.1 4 Osa04LNG0289100 35089396-35091243 long non-coding(lnc) isoforms of known genes 1301 49.57725 7
Osa04LNT0289200.3 4 Osa04LNG0289200 35091689-35098335 long non-coding(lnc) isoforms of known genes 2528 47.50791 16
Osa04LNT0289200.2 4 Osa04LNG0289200 35091689-35098335 long non-coding(lnc) isoforms of known genes 2377 48.04375 15
Osa04LNT0289200.1 4 Osa04LNG0289200 35091689-35098335 long non-coding(lnc) isoforms of known genes 2411 48.02986 15
Osa04LNT0289300.1 4 Osa04LNG0289300 35121117-35121943 long non-coding(lnc) isoforms of known genes 624 42.94872 3
Osa04LNT0289400.1 4 Osa04LNG0289400 35346591-35355861 long non-coding(lnc) isoforms of known genes 6524 47.07235 14
Osa04LNT0289500.2 4 Osa04LNG0289500 35383000-35393738 long non-coding(lnc) isoforms of known genes 5635 46.81455 12
Osa04LNT0289500.1 4 Osa04LNG0289500 35383000-35393738 long non-coding(lnc) isoforms of known genes 5656 46.83522 12
Osa04LNT0289600.1 4 Osa04LNG0289600 35415941-35416179 intronic lncRNA 239 27.61506 1
Osa04LNT0289800.3 4 Osa04LNG0289800 35423055-35426957 long non-coding(lnc) isoforms of known genes 1166 49.0566 9
Osa04LNT0289800.1 4 Osa04LNG0289800 35423055-35426957 long non-coding(lnc) isoforms of known genes 1161 49.00947 9
Osa04LNT0289800.2 4 Osa04LNG0289800 35423055-35426957 long non-coding(lnc) isoforms of known genes 1160 49.65517 8
Osa04LNT0289800.4 4 Osa04LNG0289800 35423055-35426957 long non-coding(lnc) isoforms of known genes 1162 49.05336 8
Osa04LNT0289700.1 4 Osa04LNG0289700 35430450-35432796 long non-coding(lnc) isoforms of known genes 2201 44.70695 2
Osa04LNT0289900.1 4 Osa04LNG0289900 35452104-35459864 long non-coding(lnc) isoforms of known genes 3377 48.29731 19
Osa04LNT0290000.1 4 Osa04LNG0290000 35481025-35481804 sense lncRNA 631 52.45642 2
Osa04LNT0290100.1 4 Osa04LNG0290100 35488972-35490861 long non-coding(lnc) isoforms of known genes 669 52.01794 2
Osa04LNT0248000.1 4 Osa04LNG0248000 3575397-3581555 long non-coding(lnc) isoforms of known genes 1503 45.37591 7
Osa04LNT0247900.1 4 Osa04LNG0247900 3603215-3605258 intergenetic lncRNA (lincRNA) 743 44.27995 4
Osa04LNT0484900.1 4 Osa04LNG0484900 3606533-3606732 intergenetic lncRNA (lincRNA) 200 44.0 1
Osa04LNT0248100.1 4 Osa04LNG0248100 3609053-3613579 long non-coding(lnc) isoforms of known genes 3006 52.59481 3
Osa04LNT0248200.1 4 Osa04LNG0248200 3618895-3628899 intergenetic lncRNA (lincRNA) 587 47.35945 4
Osa04LNT0485000.1 4 Osa04LNG0485000 3809723-3809925 intergenetic lncRNA (lincRNA) 203 31.52709 1
Osa04LNT0485100.1 4 Osa04LNG0485100 3894827-3895030 intergenetic lncRNA (lincRNA) 204 38.23529 1
Osa04LNT0485300.1 4 Osa04LNG0485300 4372974-4373218 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa04LNT0485200.1 4 Osa04LNG0485200 4372974-4373218 intergenetic lncRNA (lincRNA) 245 26.93878 1
Osa04LNT0485400.1 4 Osa04LNG0485400 4373286-4373560 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa04LNT0485500.1 4 Osa04LNG0485500 4373286-4373560 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa04LNT0248300.2 4 Osa04LNG0248300 4382098-4385551 long non-coding(lnc) isoforms of known genes 2230 48.29596 5
Osa04LNT0248300.1 4 Osa04LNG0248300 4382098-4385551 long non-coding(lnc) isoforms of known genes 1691 53.22295 6
Osa04LNT0248400.1 4 Osa04LNG0248400 4508968-4513848 long non-coding(lnc) isoforms of known genes 1778 52.13723 3
Osa04LNT0485600.1 4 Osa04LNG0485600 4582471-4582744 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa04LNT0485700.1 4 Osa04LNG0485700 4582471-4582744 intergenetic lncRNA (lincRNA) 274 31.38686 1
Osa04LNT0485800.1 4 Osa04LNG0485800 4717673-4717947 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa04LNT0248500.1 4 Osa04LNG0248500 4771950-4772569 intergenetic lncRNA (lincRNA) 620 50.0 1
Osa04LNT0486000.1 4 Osa04LNG0486000 4910298-4910572 intergenetic lncRNA (lincRNA) 275 28.72727 1
Osa04LNT0485900.1 4 Osa04LNG0485900 4910298-4910572 intergenetic lncRNA (lincRNA) 275 28.72727 1
Osa04LNT0248600.1 4 Osa04LNG0248600 4917981-4921960 intergenetic lncRNA (lincRNA) 3980 43.51759 1
Osa04LNT0248700.1 4 Osa04LNG0248700 5040560-5042564 sense lncRNA 1387 44.05191 2
Osa04LNT0248800.1 4 Osa04LNG0248800 5116152-5120793 intergenetic lncRNA (lincRNA) 2238 38.73995 3
Osa04LNT0248900.1 4 Osa04LNG0248900 5164110-5165320 intronic lncRNA 863 33.25608 2
Osa04LNT0249000.1 4 Osa04LNG0249000 5165387-5165661 intronic lncRNA 275 24.72727 1
Osa04LNT0249100.1 4 Osa04LNG0249100 5165387-5165661 intronic lncRNA 275 24.72727 1
Osa04LNT0249200.1 4 Osa04LNG0249200 5167579-5170532 intergenetic lncRNA (lincRNA) 2298 40.07833 3
Osa04LNT0249300.1 4 Osa04LNG0249300 5291177-5306497 long non-coding(lnc) isoforms of known genes 2146 44.22181 21
Osa04LNT0249300.2 4 Osa04LNG0249300 5291177-5306497 long non-coding(lnc) isoforms of known genes 2162 44.31082 21
Osa04LNT0249400.1 4 Osa04LNG0249400 5380120-5381564 sense lncRNA 1079 61.63114 2
Osa04LNT0249500.1 4 Osa04LNG0249500 5417086-5417716 intergenetic lncRNA (lincRNA) 631 42.78922 1
Osa04LNT0249700.2 4 Osa04LNG0249700 5655847-5666489 long non-coding(lnc) isoforms of known genes 1716 44.17249 12
Osa04LNT0249700.1 4 Osa04LNG0249700 5655847-5666489 long non-coding(lnc) isoforms of known genes 1723 44.28323 12
Osa04LNT0249600.1 4 Osa04LNG0249600 5706720-5711050 intergenetic lncRNA (lincRNA) 876 43.26484 2
Osa04LNT0249800.1 4 Osa04LNG0249800 5712772-5713895 intergenetic lncRNA (lincRNA) 466 40.34335 3
Osa04LNT0482500.1 4 Osa04LNG0482500 575339-575583 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa04LNT0482400.1 4 Osa04LNG0482400 575339-575583 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa04LNT0482700.1 4 Osa04LNG0482700 575650-575924 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0482600.1 4 Osa04LNG0482600 575650-575924 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0482800.1 4 Osa04LNG0482800 576133-576366 intergenetic lncRNA (lincRNA) 234 40.17094 1
Osa04LNT0249900.1 4 Osa04LNG0249900 5923962-5924764 intergenetic lncRNA (lincRNA) 683 39.23865 2
Osa04LNT0250000.1 4 Osa04LNG0250000 6053705-6054979 long non-coding(lnc) isoforms of known genes 567 41.62257 2
Osa04LNT0250100.2 4 Osa04LNG0250100 6095780-6096941 intergenetic lncRNA (lincRNA) 620 40.0 3
Osa04LNT0250100.1 4 Osa04LNG0250100 6095780-6096941 intergenetic lncRNA (lincRNA) 749 38.8518 2
Osa04LNT0250200.1 4 Osa04LNG0250200 6231634-6232379 long non-coding(lnc) isoforms of known genes 628 42.35669 2
Osa04LNT0486100.1 4 Osa04LNG0486100 6464211-6464454 intergenetic lncRNA (lincRNA) 244 22.95082 1
Osa04LNT0486300.1 4 Osa04LNG0486300 6464521-6464795 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa04LNT0486200.1 4 Osa04LNG0486200 6464521-6464795 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa04LNT0486400.1 4 Osa04LNG0486400 6550790-6551002 intergenetic lncRNA (lincRNA) 213 48.35681 1
Osa04LNT0245700.2 4 Osa04LNG0245700 661169-667536 long non-coding(lnc) isoforms of known genes 2433 42.54007 5
Osa04LNT0245700.1 4 Osa04LNG0245700 661169-667536 long non-coding(lnc) isoforms of known genes 2515 42.34592 4
Osa04LNT0250300.1 4 Osa04LNG0250300 6888688-6894412 sense lncRNA 3947 43.83076 2
Osa04LNT0250400.1 4 Osa04LNG0250400 6902893-6909832 long non-coding(lnc) isoforms of known genes 2817 46.50337 9
Osa04LNT0250500.1 4 Osa04LNG0250500 6913133-6927133 long non-coding(lnc) isoforms of known genes 2195 50.75171 12
Osa04LNT0250700.1 4 Osa04LNG0250700 6954536-6958372 long non-coding(lnc) isoforms of known genes 2954 46.61476 3
Osa04LNT0250600.1 4 Osa04LNG0250600 6961749-6965577 intergenetic lncRNA (lincRNA) 555 47.92793 2
Osa04LNT0250800.1 4 Osa04LNG0250800 6997052-7005620 long non-coding(lnc) isoforms of known genes 1147 42.19704 7
Osa04LNT0245800.1 4 Osa04LNG0245800 706855-711276 long non-coding(lnc) isoforms of known genes 1637 45.69334 13
Osa04LNT0250900.1 4 Osa04LNG0250900 7081791-7083021 intergenetic lncRNA (lincRNA) 1131 63.39523 2
Osa04LNT0251000.1 4 Osa04LNG0251000 7100079-7100870 intergenetic lncRNA (lincRNA) 792 46.08586 1