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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa12LNT0112800.1 12 Osa12LNG0112800 833844-835277 intergenetic lncRNA (lincRNA) 751 39.81358 2
Osa12LNT0560900.1 12 Osa12LNG0560900 8498701-8498948 intergenetic lncRNA (lincRNA) 248 27.01613 1
Osa12LNT0561000.1 12 Osa12LNG0561000 8498701-8498948 intergenetic lncRNA (lincRNA) 248 27.01613 1
Osa12LNT0561200.1 12 Osa12LNG0561200 8499853-8500126 intergenetic lncRNA (lincRNA) 274 22.9927 1
Osa12LNT0561100.1 12 Osa12LNG0561100 8499853-8500126 intergenetic lncRNA (lincRNA) 274 22.9927 1
Osa12LNT0122200.1 12 Osa12LNG0122200 8670057-8679483 long non-coding(lnc) isoforms of known genes 3389 44.43789 7
Osa12LNT0122200.2 12 Osa12LNG0122200 8670057-8679483 long non-coding(lnc) isoforms of known genes 2376 43.01347 6
Osa12LNT0122300.2 12 Osa12LNG0122300 8695284-8699390 long non-coding(lnc) isoforms of known genes 1948 41.63244 4
Osa12LNT0122300.1 12 Osa12LNG0122300 8695284-8699390 long non-coding(lnc) isoforms of known genes 987 50.45593 4
Osa12LNT0122400.1 12 Osa12LNG0122400 8726067-8737949 long non-coding(lnc) isoforms of known genes 2360 42.62712 10
Osa12LNT0122600.3 12 Osa12LNG0122600 8809699-8818252 long non-coding(lnc) isoforms of known genes 1085 56.03687 2
Osa12LNT0122600.2 12 Osa12LNG0122600 8809699-8818252 long non-coding(lnc) isoforms of known genes 1190 54.53782 3
Osa12LNT0122600.1 12 Osa12LNG0122600 8809699-8818252 sense lncRNA 1970 45.7868 2
Osa12LNT0122500.2 12 Osa12LNG0122500 8823330-8826763 sense lncRNA 3001 43.71876 3
Osa12LNT0122500.1 12 Osa12LNG0122500 8823330-8826763 sense lncRNA 3344 42.49402 2
Osa12LNT0113000.3 12 Osa12LNG0113000 917265-927893 long non-coding(lnc) isoforms of known genes 2187 47.23365 6
Osa12LNT0113000.1 12 Osa12LNG0113000 917265-927893 long non-coding(lnc) isoforms of known genes 2508 47.96651 7
Osa12LNT0113000.2 12 Osa12LNG0113000 917265-927893 long non-coding(lnc) isoforms of known genes 2353 46.79133 7
Osa12LNT0122700.1 12 Osa12LNG0122700 9263613-9270109 long non-coding(lnc) isoforms of known genes 2069 47.26921 12
Osa12LNT0122800.1 12 Osa12LNG0122800 9286790-9291493 long non-coding(lnc) isoforms of known genes 1217 49.21939 5
Osa12LNT0122800.2 12 Osa12LNG0122800 9286790-9291493 long non-coding(lnc) isoforms of known genes 959 49.63504 4
Osa12LNT0122900.2 12 Osa12LNG0122900 9303179-9318103 long non-coding(lnc) isoforms of known genes 8700 41.36782 16
Osa12LNT0122900.1 12 Osa12LNG0122900 9303179-9318103 long non-coding(lnc) isoforms of known genes 8284 41.33269 17
Osa12LNT0123000.1 12 Osa12LNG0123000 9371225-9373404 long non-coding(lnc) isoforms of known genes 1032 51.93798 3
Osa12LNT0123100.1 12 Osa12LNG0123100 9466296-9468196 sense lncRNA 652 55.06135 2
Osa12LNT0123100.2 12 Osa12LNG0123100 9466296-9468196 sense lncRNA 635 55.27559 2
Osa12LNT0123200.4 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2814 41.47122 4
Osa12LNT0123200.3 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2337 44.15918 6
Osa12LNT0123200.2 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2162 44.07956 5
Osa12LNT0123200.1 12 Osa12LNG0123200 9514404-9517532 long non-coding(lnc) isoforms of known genes 2828 41.7256 4
Osa12LNT0113100.1 12 Osa12LNG0113100 991532-996318 long non-coding(lnc) isoforms of known genes 1895 49.76253 6
Osa12LNT0123400.1 12 Osa12LNG0123400 9965589-9967931 intergenetic lncRNA (lincRNA) 2241 36.81392 2
Osa12LNT0123500.1 12 Osa12LNG0123500 9968066-9968437 intergenetic lncRNA (lincRNA) 372 67.47312 1
Osa12LNT0123300.1 12 Osa12LNG0123300 9993816-9996544 intergenetic lncRNA (lincRNA) 2633 41.89138 2
Osa12LNT0111700.1 12 Osa12LNG0111700 99964-104024 long non-coding(lnc) isoforms of known genes 2972 48.55316 3
Osa02LNT0141000.1 2 Osa02LNG0141000 1008469-1011856 long non-coding(lnc) isoforms of known genes 1533 50.68493 13
Osa02LNT0156400.1 2 Osa02LNG0156400 10122945-10124303 intergenetic lncRNA (lincRNA) 1359 54.4518 1
Osa02LNT0156500.1 2 Osa02LNG0156500 10125933-10126733 intergenetic lncRNA (lincRNA) 801 58.17728 1
Osa02LNT0156600.1 2 Osa02LNG0156600 10135285-10143931 long non-coding(lnc) isoforms of known genes 1046 46.46272 5
Osa02LNT0475500.1 2 Osa02LNG0475500 10252198-10252444 intergenetic lncRNA (lincRNA) 247 51.01215 1
Osa02LNT0156700.1 2 Osa02LNG0156700 10378457-10380327 long non-coding(lnc) isoforms of known genes 1116 52.95699 8
Osa02LNT0141100.1 2 Osa02LNG0141100 1038123-1039684 sense lncRNA 1481 57.86631 2
Osa02LNT0156800.1 2 Osa02LNG0156800 10437396-10440764 long non-coding(lnc) isoforms of known genes 1450 44.55172 10
Osa02LNT0156900.1 2 Osa02LNG0156900 10534438-10534655 intergenetic lncRNA (lincRNA) 218 43.57798 1
Osa02LNT0157000.1 2 Osa02LNG0157000 10539146-10543155 sense lncRNA 3595 46.56467 2
Osa02LNT0157100.1 2 Osa02LNG0157100 10552654-10558881 long non-coding(lnc) isoforms of known genes 2453 46.02528 13
Osa02LNT0157200.1 2 Osa02LNG0157200 10656004-10656369 intergenetic lncRNA (lincRNA) 366 61.47541 1
Osa02LNT0141200.1 2 Osa02LNG0141200 1068979-1072119 long non-coding(lnc) isoforms of known genes 1237 47.21099 7
Osa02LNT0157300.1 2 Osa02LNG0157300 10791760-10803576 intergenetic lncRNA (lincRNA) 681 40.67548 3
Osa02LNT0157400.1 2 Osa02LNG0157400 10792671-10792894 intergenetic lncRNA (lincRNA) 224 46.42857 1