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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa04LNT0245900.1 4 Osa04LNG0245900 715787-722218 long non-coding(lnc) isoforms of known genes 1866 46.73098 12
Osa04LNT0251100.1 4 Osa04LNG0251100 7201373-7201647 intergenetic lncRNA (lincRNA) 275 41.45455 1
Osa04LNT0251200.1 4 Osa04LNG0251200 7380329-7381190 intergenetic lncRNA (lincRNA) 862 53.48028 1
Osa04LNT0483000.1 4 Osa04LNG0483000 744915-745186 intergenetic lncRNA (lincRNA) 272 27.94118 1
Osa04LNT0482900.1 4 Osa04LNG0482900 744915-745186 intergenetic lncRNA (lincRNA) 272 27.94118 1
Osa04LNT0486600.1 4 Osa04LNG0486600 7495762-7496017 intergenetic lncRNA (lincRNA) 256 25.78125 1
Osa04LNT0486500.1 4 Osa04LNG0486500 7495762-7496017 intergenetic lncRNA (lincRNA) 256 25.78125 1
Osa04LNT0251300.1 4 Osa04LNG0251300 7498137-7499038 intergenetic lncRNA (lincRNA) 902 55.32151 1
Osa04LNT0486700.1 4 Osa04LNG0486700 7602135-7602342 intergenetic lncRNA (lincRNA) 208 49.51923 1
Osa04LNT0251400.1 4 Osa04LNG0251400 7873528-7876305 long non-coding(lnc) isoforms of known genes 2090 41.05263 3
Osa04LNT0251500.1 4 Osa04LNG0251500 7891070-7891272 intergenetic lncRNA (lincRNA) 203 22.6601 1
Osa04LNT0251600.1 4 Osa04LNG0251600 7893523-7901781 long non-coding(lnc) isoforms of known genes 3834 46.81794 3
Osa04LNT0246100.1 4 Osa04LNG0246100 793567-799305 long non-coding(lnc) isoforms of known genes 2880 48.54167 3
Osa04LNT0246100.2 4 Osa04LNG0246100 793567-799305 long non-coding(lnc) isoforms of known genes 2693 49.31303 4
Osa04LNT0251700.1 4 Osa04LNG0251700 7939747-7943929 intergenetic lncRNA (lincRNA) 1214 52.22405 8
Osa04LNT0251700.2 4 Osa04LNG0251700 7939747-7943929 intergenetic lncRNA (lincRNA) 2001 45.22739 7
Osa04LNT0486800.1 4 Osa04LNG0486800 7996920-7997145 intronic lncRNA 226 49.11504 1
Osa04LNT0251800.1 4 Osa04LNG0251800 8031370-8038086 long non-coding(lnc) isoforms of known genes 6273 46.56464 2
Osa04LNT0252000.1 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 3818 45.46883 9
Osa04LNT0252000.4 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 1779 42.552 6
Osa04LNT0252000.3 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 3154 45.21243 8
Osa04LNT0252000.2 4 Osa04LNG0252000 8083780-8090694 long non-coding(lnc) isoforms of known genes 4260 48.35681 10
Osa04LNT0251900.1 4 Osa04LNG0251900 8117548-8126285 long non-coding(lnc) isoforms of known genes 3511 49.4446 10
Osa04LNT0252100.1 4 Osa04LNG0252100 8216513-8233268 long non-coding(lnc) isoforms of known genes 2322 44.65978 23
Osa04LNT0252200.1 4 Osa04LNG0252200 8267100-8268818 sense lncRNA 1387 63.66258 2
Osa04LNT0252300.2 4 Osa04LNG0252300 8277248-8285271 long non-coding(lnc) isoforms of known genes 1861 46.74906 8
Osa04LNT0252300.1 4 Osa04LNG0252300 8277248-8285271 long non-coding(lnc) isoforms of known genes 3796 47.18124 7
Osa04LNT0252400.1 4 Osa04LNG0252400 8307367-8314102 long non-coding(lnc) isoforms of known genes 2017 47.0005 7
Osa04LNT0252500.1 4 Osa04LNG0252500 8322670-8327520 intergenetic lncRNA (lincRNA) 747 56.89424 3
Osa04LNT0246000.1 4 Osa04LNG0246000 835516-837306 long non-coding(lnc) isoforms of known genes 539 57.88497 2
Osa04LNT0252600.1 4 Osa04LNG0252600 8588685-8594100 long non-coding(lnc) isoforms of known genes 2145 49.09091 15
Osa04LNT0483100.1 4 Osa04LNG0483100 863327-863601 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0483200.1 4 Osa04LNG0483200 863327-863601 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa04LNT0252700.1 4 Osa04LNG0252700 8764579-8767163 long non-coding(lnc) isoforms of known genes 2270 41.32159 2
Osa04LNT0486900.1 4 Osa04LNG0486900 9115456-9115981 intergenetic lncRNA (lincRNA) 526 35.36122 1
Osa04LNT0252800.1 4 Osa04LNG0252800 9262698-9265370 long non-coding(lnc) isoforms of known genes 2218 46.25789 4
Osa04LNT0252900.1 4 Osa04LNG0252900 9368053-9369130 long non-coding(lnc) isoforms of known genes 957 52.87356 2
Osa04LNT0253000.1 4 Osa04LNG0253000 9376536-9388852 sense lncRNA 3517 43.87262 15
Osa04LNT0246200.1 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 538 53.90335 2
Osa04LNT0246200.2 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 595 53.44538 3
Osa04LNT0246200.3 4 Osa04LNG0246200 937900-940774 long non-coding(lnc) isoforms of known genes 1435 49.33798 3
Osa04LNT0253100.1 4 Osa04LNG0253100 9676364-9678593 sense lncRNA 776 60.69588 2
Osa04LNT0253200.1 4 Osa04LNG0253200 9687994-9689204 sense lncRNA 656 46.18902 3
Osa04LNT0253700.2 4 Osa04LNG0253700 9888904-9916256 long non-coding(lnc) isoforms of known genes 5341 44.35499 26
Osa04LNT0253700.1 4 Osa04LNG0253700 9888904-9916256 long non-coding(lnc) isoforms of known genes 5167 44.39714 26
Osa04LNT0253300.1 4 Osa04LNG0253300 9919847-9926446 intergenetic lncRNA (lincRNA) 513 50.87719 3
Osa04LNT0253600.1 4 Osa04LNG0253600 9939337-9956348 long non-coding(lnc) isoforms of known genes 2929 45.51041 21
Osa05LNT0291500.1 5 Osa05LNG0291500 1007909-1008429 intronic lncRNA 521 33.20537 1
Osa05LNT0291600.1 5 Osa05LNG0291600 1026087-1026890 intergenetic lncRNA (lincRNA) 499 55.11022 2
Osa05LNT0300300.1 5 Osa05LNG0300300 10266403-10269380 intergenetic lncRNA (lincRNA) 1230 52.84553 4
Osa05LNT0291700.1 5 Osa05LNG0291700 1045929-1049358 long non-coding(lnc) isoforms of known genes 1472 51.83424 7
Osa05LNT0300400.1 5 Osa05LNG0300400 10525087-10527433 long non-coding(lnc) isoforms of known genes 818 49.511 5
Osa05LNT0300500.1 5 Osa05LNG0300500 10531518-10534538 intergenetic lncRNA (lincRNA) 2105 47.69596 4
Osa05LNT0515900.1 5 Osa05LNG0515900 10534994-10535272 intergenetic lncRNA (lincRNA) 279 24.73118 1
Osa05LNT0515800.1 5 Osa05LNG0515800 10534994-10535272 intergenetic lncRNA (lincRNA) 279 24.73118 1
Osa05LNT0300600.1 5 Osa05LNG0300600 10538915-10546640 long non-coding(lnc) isoforms of known genes 496 44.75806 2
Osa05LNT0300700.2 5 Osa05LNG0300700 10720410-10723769 long non-coding(lnc) isoforms of known genes 2457 46.76435 3
Osa05LNT0300700.1 5 Osa05LNG0300700 10720410-10723769 long non-coding(lnc) isoforms of known genes 2607 46.37514 3
Osa05LNT0300800.1 5 Osa05LNG0300800 10799775-10803543 long non-coding(lnc) isoforms of known genes 1895 44.69657 7
Osa05LNT0516000.1 5 Osa05LNG0516000 10818116-10818360 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa05LNT0516100.1 5 Osa05LNG0516100 10818427-10818701 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa05LNT0516200.1 5 Osa05LNG0516200 10818427-10818701 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa05LNT0516300.1 5 Osa05LNG0516300 10846297-10846570 intergenetic lncRNA (lincRNA) 274 24.81752 1
Osa05LNT0516400.1 5 Osa05LNG0516400 11099280-11099486 intergenetic lncRNA (lincRNA) 207 53.62319 1
Osa05LNT0291800.1 5 Osa05LNG0291800 1127011-1132408 long non-coding(lnc) isoforms of known genes 1835 46.86649 14
Osa05LNT0516600.1 5 Osa05LNG0516600 11401530-11401806 intergenetic lncRNA (lincRNA) 277 25.63177 1
Osa05LNT0516500.1 5 Osa05LNG0516500 11401530-11401806 intergenetic lncRNA (lincRNA) 277 25.63177 1
Osa05LNT0516700.1 5 Osa05LNG0516700 11401888-11402105 intergenetic lncRNA (lincRNA) 218 30.73394 1
Osa05LNT0300900.1 5 Osa05LNG0300900 11436332-11440534 long non-coding(lnc) isoforms of known genes 2067 49.78229 12
Osa05LNT0516800.1 5 Osa05LNG0516800 11491627-11491886 intergenetic lncRNA (lincRNA) 260 39.23077 1
Osa05LNT0291900.2 5 Osa05LNG0291900 1156300-1160271 long non-coding(lnc) isoforms of known genes 2282 58.45749 7
Osa05LNT0291900.1 5 Osa05LNG0291900 1156300-1160271 long non-coding(lnc) isoforms of known genes 2514 56.68258 6
Osa05LNT0516900.1 5 Osa05LNG0516900 11619900-11620104 intergenetic lncRNA (lincRNA) 205 21.46341 1
Osa05LNT0301000.1 5 Osa05LNG0301000 11647853-11656581 long non-coding(lnc) isoforms of known genes 1204 48.75415 6
Osa05LNT0517000.1 5 Osa05LNG0517000 11890849-11891121 intergenetic lncRNA (lincRNA) 273 26.73993 1
Osa05LNT0517100.1 5 Osa05LNG0517100 11890849-11891121 intergenetic lncRNA (lincRNA) 273 26.73993 1
Osa05LNT0517300.1 5 Osa05LNG0517300 11905927-11906192 intergenetic lncRNA (lincRNA) 266 24.43609 1
Osa05LNT0517200.1 5 Osa05LNG0517200 11905927-11906192 intergenetic lncRNA (lincRNA) 266 24.43609 1
Osa05LNT0517500.1 5 Osa05LNG0517500 12672786-12673056 intergenetic lncRNA (lincRNA) 271 27.67528 1
Osa05LNT0517400.1 5 Osa05LNG0517400 12672786-12673056 intergenetic lncRNA (lincRNA) 271 27.67528 1
Osa05LNT0301100.1 5 Osa05LNG0301100 12675159-12680939 long non-coding(lnc) isoforms of known genes 3662 37.46587 7
Osa05LNT0301200.2 5 Osa05LNG0301200 12926437-12931288 intergenetic lncRNA (lincRNA) 4038 45.2947 2
Osa05LNT0301200.1 5 Osa05LNG0301200 12926437-12931288 intergenetic lncRNA (lincRNA) 4852 43.40478 1
Osa05LNT0301200.3 5 Osa05LNG0301200 12926437-12931288 intergenetic lncRNA (lincRNA) 2455 44.92872 3
Osa05LNT0301300.1 5 Osa05LNG0301300 12993987-12997459 intergenetic lncRNA (lincRNA) 1981 41.89803 7
Osa05LNT0301400.1 5 Osa05LNG0301400 13006292-13012753 long non-coding(lnc) isoforms of known genes 4038 41.30758 6
Osa05LNT0301400.2 5 Osa05LNG0301400 13006292-13012753 long non-coding(lnc) isoforms of known genes 2122 47.73798 6
Osa05LNT0301500.1 5 Osa05LNG0301500 13057124-13060284 long non-coding(lnc) isoforms of known genes 1172 43.94198 8
Osa05LNT0301600.1 5 Osa05LNG0301600 13064221-13078062 long non-coding(lnc) isoforms of known genes 7648 44.41684 34
Osa05LNT0301600.2 5 Osa05LNG0301600 13064221-13078062 long non-coding(lnc) isoforms of known genes 7632 44.41824 34
Osa05LNT0301700.1 5 Osa05LNG0301700 13088610-13092914 long non-coding(lnc) isoforms of known genes 2008 46.71315 9
Osa05LNT0301700.2 5 Osa05LNG0301700 13088610-13092914 long non-coding(lnc) isoforms of known genes 1505 51.29568 9
Osa05LNT0517700.1 5 Osa05LNG0517700 13268111-13268347 intergenetic lncRNA (lincRNA) 237 27.42616 1
Osa05LNT0517600.1 5 Osa05LNG0517600 13268111-13268347 intergenetic lncRNA (lincRNA) 237 27.42616 1
Osa05LNT0301800.1 5 Osa05LNG0301800 13320188-13321044 intergenetic lncRNA (lincRNA) 759 39.52569 2
Osa05LNT0301800.2 5 Osa05LNG0301800 13320188-13321044 intergenetic lncRNA (lincRNA) 1059 56.46837 2
Osa05LNT0301800.3 5 Osa05LNG0301800 13320188-13321044 intergenetic lncRNA (lincRNA) 1158 56.39033 2
Osa05LNT0517800.1 5 Osa05LNG0517800 13366511-13366743 intergenetic lncRNA (lincRNA) 233 45.49356 1
Osa05LNT0301900.1 5 Osa05LNG0301900 13374532-13383400 long non-coding(lnc) isoforms of known genes 1758 56.54152 7
Osa05LNT0302000.2 5 Osa05LNG0302000 13385142-13391031 long non-coding(lnc) isoforms of known genes 2544 45.04717 16