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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0157500.1 2 Osa02LNG0157500 10897250-10902007 sense lncRNA 1435 59.5122 7
Osa02LNT0141300.1 2 Osa02LNG0141300 1090428-1095967 long non-coding(lnc) isoforms of known genes 1932 50.15528 12
Osa02LNT0475600.1 2 Osa02LNG0475600 10904990-10905264 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa02LNT0475700.1 2 Osa02LNG0475700 10904990-10905264 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa02LNT0157600.1 2 Osa02LNG0157600 10972770-10986816 long non-coding(lnc) isoforms of known genes 3098 46.32021 17
Osa02LNT0475800.1 2 Osa02LNG0475800 11021134-11021377 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa02LNT0475900.1 2 Osa02LNG0475900 11021134-11021377 intergenetic lncRNA (lincRNA) 244 25.0 1
Osa02LNT0476000.1 2 Osa02LNG0476000 11021444-11021718 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa02LNT0476100.1 2 Osa02LNG0476100 11021444-11021718 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa02LNT0157800.1 2 Osa02LNG0157800 11056973-11060282 long non-coding(lnc) isoforms of known genes 1773 42.8652 9
Osa02LNT0157700.1 2 Osa02LNG0157700 11066134-11069563 long non-coding(lnc) isoforms of known genes 1846 42.52438 6
Osa02LNT0141400.1 2 Osa02LNG0141400 1123516-1125397 long non-coding(lnc) isoforms of known genes 1599 55.28455 3
Osa02LNT0141500.1 2 Osa02LNG0141500 1126062-1132613 long non-coding(lnc) isoforms of known genes 2444 47.21768 14
Osa02LNT0157900.1 2 Osa02LNG0157900 11335486-11337934 intergenetic lncRNA (lincRNA) 1813 50.24821 3
Osa02LNT0158000.2 2 Osa02LNG0158000 11353388-11357713 long non-coding(lnc) isoforms of known genes 1293 49.88399 6
Osa02LNT0158000.1 2 Osa02LNG0158000 11353388-11357713 long non-coding(lnc) isoforms of known genes 1274 50.86342 7
Osa02LNT0158100.1 2 Osa02LNG0158100 11426993-11431281 long non-coding(lnc) isoforms of known genes 1004 51.79283 3
Osa02LNT0158200.1 2 Osa02LNG0158200 11484496-11488308 long non-coding(lnc) isoforms of known genes 1564 51.47059 10
Osa02LNT0158300.1 2 Osa02LNG0158300 11568279-11569112 sense lncRNA 616 49.18831 2
Osa02LNT0141600.1 2 Osa02LNG0141600 1158885-1161270 long non-coding(lnc) isoforms of known genes 918 49.89107 7
Osa02LNT0141700.1 2 Osa02LNG0141700 1166453-1173452 long non-coding(lnc) isoforms of known genes 1832 49.67249 14
Osa02LNT0141700.3 2 Osa02LNG0141700 1166453-1173452 long non-coding(lnc) isoforms of known genes 2470 45.66802 13
Osa02LNT0141700.2 2 Osa02LNG0141700 1166453-1173452 long non-coding(lnc) isoforms of known genes 2449 45.81462 13
Osa02LNT0158400.1 2 Osa02LNG0158400 11737311-11741850 long non-coding(lnc) isoforms of known genes 2922 49.86311 5
Osa02LNT0158400.2 2 Osa02LNG0158400 11737311-11741850 long non-coding(lnc) isoforms of known genes 2966 45.01011 3
Osa02LNT0158400.3 2 Osa02LNG0158400 11737311-11741850 long non-coding(lnc) isoforms of known genes 2669 45.78494 4
Osa02LNT0158500.1 2 Osa02LNG0158500 11882306-11885861 long non-coding(lnc) isoforms of known genes 2356 41.55348 4
Osa02LNT0158600.2 2 Osa02LNG0158600 11894444-11906139 intergenetic lncRNA (lincRNA) 438 47.03196 2
Osa02LNT0158600.1 2 Osa02LNG0158600 11894444-11906139 intergenetic lncRNA (lincRNA) 823 48.35966 3
Osa02LNT0141800.1 2 Osa02LNG0141800 1193472-1197056 long non-coding(lnc) isoforms of known genes 2303 46.54798 6
Osa02LNT0141900.1 2 Osa02LNG0141900 1198103-1202290 long non-coding(lnc) isoforms of known genes 1746 48.10997 11
Osa02LNT0158700.2 2 Osa02LNG0158700 12008815-12015423 long non-coding(lnc) isoforms of known genes 1921 43.15461 7
Osa02LNT0158700.1 2 Osa02LNG0158700 12008815-12015423 long non-coding(lnc) isoforms of known genes 1351 48.26055 8
Osa02LNT0142000.1 2 Osa02LNG0142000 1224734-1226866 long non-coding(lnc) isoforms of known genes 2048 52.00195 2
Osa02LNT0142100.1 2 Osa02LNG0142100 1231184-1234422 long non-coding(lnc) isoforms of known genes 1425 43.64912 10
Osa02LNT0158800.1 2 Osa02LNG0158800 12340258-12345904 long non-coding(lnc) isoforms of known genes 2704 38.16568 9
Osa02LNT0159000.1 2 Osa02LNG0159000 12398146-12405240 long non-coding(lnc) isoforms of known genes 2610 47.93103 13
Osa02LNT0158900.1 2 Osa02LNG0158900 12409437-12410646 intergenetic lncRNA (lincRNA) 1210 54.46281 1
Osa02LNT0159200.4 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 2615 53.53728 15
Osa02LNT0159200.3 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 4075 47.60736 14
Osa02LNT0159200.2 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 4309 46.92504 12
Osa02LNT0159200.1 2 Osa02LNG0159200 12414384-12421835 long non-coding(lnc) isoforms of known genes 4041 47.68622 14
Osa02LNT0159100.1 2 Osa02LNG0159100 12450786-12454429 intergenetic lncRNA (lincRNA) 2732 39.7511 5
Osa02LNT0476200.1 2 Osa02LNG0476200 12642727-12642984 intergenetic lncRNA (lincRNA) 258 43.02326 1
Osa02LNT0159300.1 2 Osa02LNG0159300 12663575-12669932 long non-coding(lnc) isoforms of known genes 4052 40.89339 17
Osa02LNT0159300.2 2 Osa02LNG0159300 12663575-12669932 long non-coding(lnc) isoforms of known genes 3600 40.69444 15
Osa02LNT0159400.1 2 Osa02LNG0159400 12731587-12736174 sense lncRNA 2668 53.29835 6
Osa02LNT0159500.1 2 Osa02LNG0159500 12757899-12762205 long non-coding(lnc) isoforms of known genes 2362 45.80864 8
Osa02LNT0159500.2 2 Osa02LNG0159500 12757899-12762205 long non-coding(lnc) isoforms of known genes 2289 45.91525 9
Osa02LNT0159600.1 2 Osa02LNG0159600 12809576-12817254 long non-coding(lnc) isoforms of known genes 2664 47.44745 5