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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0302000.1 5 Osa05LNG0302000 13385142-13391031 long non-coding(lnc) isoforms of known genes 2547 44.91559 16
Osa05LNT0292000.1 5 Osa05LNG0292000 1340213-1341131 intergenetic lncRNA (lincRNA) 919 51.14255 1
Osa05LNT0302100.1 5 Osa05LNG0302100 13421645-13424003 sense lncRNA 1894 50.21119 2
Osa05LNT0302100.2 5 Osa05LNG0302100 13421645-13424003 sense lncRNA 1854 50.48544 2
Osa05LNT0292100.2 5 Osa05LNG0292100 1348492-1355035 long non-coding(lnc) isoforms of known genes 2108 44.02277 9
Osa05LNT0292100.1 5 Osa05LNG0292100 1348492-1355035 long non-coding(lnc) isoforms of known genes 2122 44.53346 10
Osa05LNT0302200.1 5 Osa05LNG0302200 13491695-13492286 intergenetic lncRNA (lincRNA) 592 40.87838 1
Osa05LNT0302300.1 5 Osa05LNG0302300 13511797-13521191 intergenetic lncRNA (lincRNA) 1984 36.69355 7
Osa05LNT0302500.1 5 Osa05LNG0302500 13543055-13547500 long non-coding(lnc) isoforms of known genes 1302 48.3871 8
Osa05LNT0302500.2 5 Osa05LNG0302500 13543055-13547500 long non-coding(lnc) isoforms of known genes 1321 48.06964 8
Osa05LNT0302400.1 5 Osa05LNG0302400 13554176-13556181 intergenetic lncRNA (lincRNA) 2006 53.83848 1
Osa05LNT0290300.1 5 Osa05LNG0290300 136808-143130 sense lncRNA 5659 41.03198 2
Osa05LNT0302600.1 5 Osa05LNG0302600 13709153-13711842 long non-coding(lnc) isoforms of known genes 912 62.0614 3
Osa05LNT0517900.1 5 Osa05LNG0517900 13712361-13712635 intergenetic lncRNA (lincRNA) 275 28.0 1
Osa05LNT0518000.1 5 Osa05LNG0518000 13712361-13712635 intergenetic lncRNA (lincRNA) 275 28.0 1
Osa05LNT0302700.1 5 Osa05LNG0302700 13755513-13763437 long non-coding(lnc) isoforms of known genes 1996 53.45691 8
Osa05LNT0302800.1 5 Osa05LNG0302800 13791123-13791973 intergenetic lncRNA (lincRNA) 851 37.01528 1
Osa05LNT0518100.1 5 Osa05LNG0518100 13792598-13792800 intergenetic lncRNA (lincRNA) 203 22.6601 1
Osa05LNT0302900.1 5 Osa05LNG0302900 13823209-13828651 long non-coding(lnc) isoforms of known genes 1315 52.69962 7
Osa05LNT0303000.2 5 Osa05LNG0303000 13939740-13946493 long non-coding(lnc) isoforms of known genes 3052 50.62254 6
Osa05LNT0303000.1 5 Osa05LNG0303000 13939740-13946493 long non-coding(lnc) isoforms of known genes 1956 47.34151 8
Osa05LNT0292200.1 5 Osa05LNG0292200 1397320-1404503 long non-coding(lnc) isoforms of known genes 3316 43.39566 10
Osa05LNT0303200.1 5 Osa05LNG0303200 14294833-14297297 sense lncRNA 2359 41.54303 2
Osa05LNT0303100.1 5 Osa05LNG0303100 14309615-14310154 intergenetic lncRNA (lincRNA) 540 56.66667 1
Osa05LNT0303300.1 5 Osa05LNG0303300 14427905-14432505 long non-coding(lnc) isoforms of known genes 3570 49.7479 6
Osa05LNT0518200.1 5 Osa05LNG0518200 14480529-14480754 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa05LNT0303400.2 5 Osa05LNG0303400 14498561-14506847 long non-coding(lnc) isoforms of known genes 3473 46.58796 10
Osa05LNT0303400.1 5 Osa05LNG0303400 14498561-14506847 long non-coding(lnc) isoforms of known genes 3680 45.97826 10
Osa05LNT0303500.1 5 Osa05LNG0303500 14598051-14606210 long non-coding(lnc) isoforms of known genes 2269 50.28647 6
Osa05LNT0303600.1 5 Osa05LNG0303600 14646804-14647551 intergenetic lncRNA (lincRNA) 748 52.54011 1
Osa05LNT0518300.1 5 Osa05LNG0518300 14672186-14672463 intergenetic lncRNA (lincRNA) 278 25.53957 1
Osa05LNT0518400.1 5 Osa05LNG0518400 14672186-14672463 intergenetic lncRNA (lincRNA) 278 25.53957 1
Osa05LNT0292300.1 5 Osa05LNG0292300 1502980-1509332 long non-coding(lnc) isoforms of known genes 4715 53.3404 5
Osa05LNT0303700.1 5 Osa05LNG0303700 15059889-15060486 intergenetic lncRNA (lincRNA) 598 49.66555 1
Osa05LNT0303800.1 5 Osa05LNG0303800 15066490-15067228 intergenetic lncRNA (lincRNA) 739 45.60217 1
Osa05LNT0303900.1 5 Osa05LNG0303900 15092105-15095114 long non-coding(lnc) isoforms of known genes 2622 45.76659 5
Osa05LNT0304000.1 5 Osa05LNG0304000 15526644-15527388 intergenetic lncRNA (lincRNA) 636 59.74843 2
Osa05LNT0304100.1 5 Osa05LNG0304100 15609569-15613588 long non-coding(lnc) isoforms of known genes 1542 40.66148 13
Osa05LNT0304200.1 5 Osa05LNG0304200 15617637-15624148 long non-coding(lnc) isoforms of known genes 2865 45.51483 7
Osa05LNT0304300.1 5 Osa05LNG0304300 15635377-15638517 long non-coding(lnc) isoforms of known genes 2000 43.95 6
Osa05LNT0304500.1 5 Osa05LNG0304500 15656749-15662427 long non-coding(lnc) isoforms of known genes 2930 40.64846 5
Osa05LNT0304400.1 5 Osa05LNG0304400 15676096-15676409 intergenetic lncRNA (lincRNA) 314 37.26115 1
Osa05LNT0304600.1 5 Osa05LNG0304600 15681979-15688151 long non-coding(lnc) isoforms of known genes 2094 41.3085 9
Osa05LNT0304700.1 5 Osa05LNG0304700 15710700-15729194 long non-coding(lnc) isoforms of known genes 429 62.47086 3
Osa05LNT0304800.2 5 Osa05LNG0304800 15775700-15778750 long non-coding(lnc) isoforms of known genes 1107 49.50316 6
Osa05LNT0304800.1 5 Osa05LNG0304800 15775700-15778750 long non-coding(lnc) isoforms of known genes 1056 49.81061 5
Osa05LNT0304900.1 5 Osa05LNG0304900 15873585-15880419 long non-coding(lnc) isoforms of known genes 2322 48.62188 10
Osa05LNT0305000.1 5 Osa05LNG0305000 15998582-16011131 long non-coding(lnc) isoforms of known genes 2267 42.3026 11
Osa05LNT0305100.1 5 Osa05LNG0305100 16019208-16023701 long non-coding(lnc) isoforms of known genes 1141 45.22349 6
Osa05LNT0305200.1 5 Osa05LNG0305200 16184119-16186658 long non-coding(lnc) isoforms of known genes 2350 43.48936 2
Osa05LNT0305300.1 5 Osa05LNG0305300 16253132-16264981 long non-coding(lnc) isoforms of known genes 3162 43.83302 19
Osa05LNT0305400.2 5 Osa05LNG0305400 16267486-16273940 long non-coding(lnc) isoforms of known genes 2935 45.28109 13
Osa05LNT0305400.3 5 Osa05LNG0305400 16267486-16273940 long non-coding(lnc) isoforms of known genes 3280 42.71341 8
Osa05LNT0305400.1 5 Osa05LNG0305400 16267486-16273940 long non-coding(lnc) isoforms of known genes 2841 45.33615 14
Osa05LNT0305500.1 5 Osa05LNG0305500 16297074-16300385 long non-coding(lnc) isoforms of known genes 2486 46.90265 2
Osa05LNT0511900.1 5 Osa05LNG0511900 1632695-1632900 intergenetic lncRNA (lincRNA) 206 48.54369 1
Osa05LNT0305600.1 5 Osa05LNG0305600 16344071-16346557 long non-coding(lnc) isoforms of known genes 1491 42.45473 4
Osa05LNT0512000.1 5 Osa05LNG0512000 1636798-1637003 intergenetic lncRNA (lincRNA) 206 48.54369 1
Osa05LNT0305700.1 5 Osa05LNG0305700 16421495-16423179 long non-coding(lnc) isoforms of known genes 881 56.52667 5
Osa05LNT0518500.1 5 Osa05LNG0518500 16621528-16621790 intergenetic lncRNA (lincRNA) 263 24.3346 1
Osa05LNT0305800.1 5 Osa05LNG0305800 16622355-16625752 long non-coding(lnc) isoforms of known genes 1094 62.88848 4
Osa05LNT0305900.1 5 Osa05LNG0305900 16702120-16705206 long non-coding(lnc) isoforms of known genes 2473 61.09988 4
Osa05LNT0518700.1 5 Osa05LNG0518700 16710422-16710697 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa05LNT0518600.1 5 Osa05LNG0518600 16710422-16710697 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa05LNT0306000.1 5 Osa05LNG0306000 16781887-16786133 long non-coding(lnc) isoforms of known genes 2156 49.16512 4
Osa05LNT0306100.2 5 Osa05LNG0306100 16977286-16982184 long non-coding(lnc) isoforms of known genes 1715 52.18659 9
Osa05LNT0306100.1 5 Osa05LNG0306100 16977286-16982184 long non-coding(lnc) isoforms of known genes 1722 52.14866 9
Osa05LNT0306200.2 5 Osa05LNG0306200 16984532-16987132 long non-coding(lnc) isoforms of known genes 884 45.13575 5
Osa05LNT0306200.1 5 Osa05LNG0306200 16984532-16987132 long non-coding(lnc) isoforms of known genes 1353 40.05913 5
Osa05LNT0306300.1 5 Osa05LNG0306300 16988964-16993972 long non-coding(lnc) isoforms of known genes 1291 50.6584 5
Osa05LNT0306400.1 5 Osa05LNG0306400 17006521-17011746 long non-coding(lnc) isoforms of known genes 2005 43.04239 17
Osa05LNT0306600.1 5 Osa05LNG0306600 17051414-17062707 long non-coding(lnc) isoforms of known genes 3999 44.7862 20
Osa05LNT0306500.2 5 Osa05LNG0306500 17119563-17120402 intergenetic lncRNA (lincRNA) 550 47.63636 3
Osa05LNT0306500.1 5 Osa05LNG0306500 17119563-17120402 intergenetic lncRNA (lincRNA) 364 39.28571 2
Osa05LNT0306700.1 5 Osa05LNG0306700 17318476-17319784 sense lncRNA 813 50.67651 2
Osa05LNT0306800.1 5 Osa05LNG0306800 17343645-17347613 long non-coding(lnc) isoforms of known genes 3593 49.90259 4
Osa05LNT0306900.1 5 Osa05LNG0306900 17433072-17433699 intergenetic lncRNA (lincRNA) 535 67.66355 2
Osa05LNT0307100.1 5 Osa05LNG0307100 17441754-17445913 long non-coding(lnc) isoforms of known genes 3323 44.32741 2
Osa05LNT0307000.1 5 Osa05LNG0307000 17482470-17483784 intergenetic lncRNA (lincRNA) 1168 54.10959 2
Osa05LNT0307200.1 5 Osa05LNG0307200 17621500-17623499 long non-coding(lnc) isoforms of known genes 1061 56.64467 6
Osa05LNT0307300.1 5 Osa05LNG0307300 17794142-17795130 sense lncRNA 453 54.74614 2
Osa05LNT0307400.1 5 Osa05LNG0307400 17846080-17847487 intergenetic lncRNA (lincRNA) 1408 51.70455 1
Osa05LNT0307500.1 5 Osa05LNG0307500 17854913-17865113 long non-coding(lnc) isoforms of known genes 5205 41.44092 13
Osa05LNT0307600.1 5 Osa05LNG0307600 17880820-17882234 long non-coding(lnc) isoforms of known genes 681 53.01028 3
Osa05LNT0307700.1 5 Osa05LNG0307700 17942072-17945452 long non-coding(lnc) isoforms of known genes 1899 44.91838 9
Osa05LNT0307800.1 5 Osa05LNG0307800 18001558-18007379 long non-coding(lnc) isoforms of known genes 2097 50.5484 5
Osa05LNT0307900.1 5 Osa05LNG0307900 18161343-18169055 long non-coding(lnc) isoforms of known genes 1493 52.64568 7
Osa05LNT0290400.1 5 Osa05LNG0290400 182380-184740 long non-coding(lnc) isoforms of known genes 986 48.07302 5
Osa05LNT0518800.1 5 Osa05LNG0518800 18272252-18272479 intergenetic lncRNA (lincRNA) 228 22.80702 1
Osa05LNT0518900.1 5 Osa05LNG0518900 18303233-18303454 intergenetic lncRNA (lincRNA) 222 28.37838 1
Osa05LNT0519000.1 5 Osa05LNG0519000 18303233-18303454 intergenetic lncRNA (lincRNA) 222 28.37838 1
Osa05LNT0292400.2 5 Osa05LNG0292400 1830765-1833326 long non-coding(lnc) isoforms of known genes 1262 50.15848 7
Osa05LNT0292400.1 5 Osa05LNG0292400 1830765-1833326 long non-coding(lnc) isoforms of known genes 1585 47.06625 5
Osa05LNT0308000.1 5 Osa05LNG0308000 18313487-18318438 long non-coding(lnc) isoforms of known genes 2979 42.59819 6
Osa05LNT0308100.1 5 Osa05LNG0308100 18370452-18371184 long non-coding(lnc) isoforms of known genes 661 53.70651 2
Osa05LNT0308200.1 5 Osa05LNG0308200 18383597-18385808 long non-coding(lnc) isoforms of known genes 1027 44.49854 3
Osa05LNT0308200.2 5 Osa05LNG0308200 18383597-18385808 long non-coding(lnc) isoforms of known genes 1034 44.58414 3
Osa05LNT0519100.1 5 Osa05LNG0519100 18482023-18482263 intergenetic lncRNA (lincRNA) 241 29.04564 1
Osa05LNT0519200.1 5 Osa05LNG0519200 18482032-18482254 intergenetic lncRNA (lincRNA) 223 28.25112 1
Osa05LNT0519300.1 5 Osa05LNG0519300 18602801-18603059 intergenetic lncRNA (lincRNA) 259 41.31274 1