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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0142200.1 2 Osa02LNG0142200 1288998-1292271 sense lncRNA 1617 51.94805 6
Osa02LNT0142300.1 2 Osa02LNG0142300 1289509-1289871 Antisense lncRNA 363 50.13774 1
Osa02LNT0159700.1 2 Osa02LNG0159700 12903031-12905529 intergenetic lncRNA (lincRNA) 1367 45.6474 2
Osa02LNT0159700.2 2 Osa02LNG0159700 12903031-12905529 intergenetic lncRNA (lincRNA) 1274 45.44741 3
Osa02LNT0159800.1 2 Osa02LNG0159800 13002652-13005194 long non-coding(lnc) isoforms of known genes 1053 54.13105 5
Osa02LNT0159900.1 2 Osa02LNG0159900 13036012-13036928 intergenetic lncRNA (lincRNA) 917 41.11232 1
Osa02LNT0160000.1 2 Osa02LNG0160000 13137869-13141201 long non-coding(lnc) isoforms of known genes 1799 44.13563 4
Osa02LNT0160100.1 2 Osa02LNG0160100 13179053-13184655 long non-coding(lnc) isoforms of known genes 2014 51.63853 5
Osa02LNT0476300.1 2 Osa02LNG0476300 13316442-13316645 intergenetic lncRNA (lincRNA) 204 26.96078 1
Osa02LNT0160200.1 2 Osa02LNG0160200 13361034-13364227 long non-coding(lnc) isoforms of known genes 2374 46.29318 6
Osa02LNT0160300.1 2 Osa02LNG0160300 13459486-13460007 intergenetic lncRNA (lincRNA) 397 38.53904 3
Osa02LNT0160400.1 2 Osa02LNG0160400 13560894-13565931 long non-coding(lnc) isoforms of known genes 1829 52.97977 3
Osa02LNT0142400.1 2 Osa02LNG0142400 1360251-1363739 intergenetic lncRNA (lincRNA) 829 44.75271 3
Osa02LNT0142500.1 2 Osa02LNG0142500 1363113-1363317 intergenetic lncRNA (lincRNA) 205 25.85366 1
Osa02LNT0142600.1 2 Osa02LNG0142600 1369761-1373693 intergenetic lncRNA (lincRNA) 750 47.86667 5
Osa02LNT0160500.1 2 Osa02LNG0160500 13772054-13773468 sense lncRNA 1297 55.74402 2
Osa02LNT0160600.1 2 Osa02LNG0160600 13855869-13859316 long non-coding(lnc) isoforms of known genes 909 51.48515 3
Osa02LNT0160700.1 2 Osa02LNG0160700 13863865-13866022 long non-coding(lnc) isoforms of known genes 1664 41.10577 4
Osa02LNT0160800.2 2 Osa02LNG0160800 13878356-13880470 intergenetic lncRNA (lincRNA) 1917 47.20918 3
Osa02LNT0160800.1 2 Osa02LNG0160800 13878356-13880470 intergenetic lncRNA (lincRNA) 1924 47.19335 3
Osa02LNT0160900.1 2 Osa02LNG0160900 13891760-13893097 intergenetic lncRNA (lincRNA) 1338 35.35127 1
Osa02LNT0161000.2 2 Osa02LNG0161000 13949434-13951812 sense lncRNA 1571 53.27817 6
Osa02LNT0161000.1 2 Osa02LNG0161000 13949434-13951812 sense lncRNA 1422 53.65682 6
Osa02LNT0161100.1 2 Osa02LNG0161100 13978689-13987358 long non-coding(lnc) isoforms of known genes 1557 48.94027 10
Osa02LNT0142700.1 2 Osa02LNG0142700 1405094-1409188 intergenetic lncRNA (lincRNA) 1475 51.05085 6
Osa02LNT0142800.2 2 Osa02LNG0142800 1420005-1424390 sense lncRNA 678 56.78466 2
Osa02LNT0142800.1 2 Osa02LNG0142800 1420005-1424390 sense lncRNA 698 55.15759 2
Osa02LNT0161200.1 2 Osa02LNG0161200 14261880-14265253 intergenetic lncRNA (lincRNA) 3374 37.16657 1
Osa02LNT0161400.1 2 Osa02LNG0161400 14356945-14361112 long non-coding(lnc) isoforms of known genes 3272 42.38998 7
Osa02LNT0161300.1 2 Osa02LNG0161300 14391906-14394959 long non-coding(lnc) isoforms of known genes 1143 56.95538 5
Osa02LNT0161500.1 2 Osa02LNG0161500 14532810-14533287 long non-coding(lnc) isoforms of known genes 335 40.29851 2
Osa02LNT0142900.1 2 Osa02LNG0142900 1461552-1468248 long non-coding(lnc) isoforms of known genes 2840 49.01408 12
Osa02LNT0143000.1 2 Osa02LNG0143000 1481272-1482452 long non-coding(lnc) isoforms of known genes 843 51.12693 3
Osa02LNT0161800.1 2 Osa02LNG0161800 14942625-14962036 long non-coding(lnc) isoforms of known genes 2553 44.73169 21
Osa02LNT0161600.1 2 Osa02LNG0161600 14966473-14967697 intergenetic lncRNA (lincRNA) 965 44.66321 2
Osa02LNT0161700.1 2 Osa02LNG0161700 14970175-14973267 intergenetic lncRNA (lincRNA) 1912 40.79498 5
Osa02LNT0162000.2 2 Osa02LNG0162000 14979099-14982717 long non-coding(lnc) isoforms of known genes 3206 41.82782 3
Osa02LNT0162000.1 2 Osa02LNG0162000 14979099-14982717 long non-coding(lnc) isoforms of known genes 3300 41.66667 2
Osa02LNT0161900.1 2 Osa02LNG0161900 14991803-14993674 long non-coding(lnc) isoforms of known genes 1540 49.87013 4
Osa02LNT0162100.1 2 Osa02LNG0162100 15000028-15003048 sense lncRNA 2590 46.37066 5
Osa02LNT0476400.1 2 Osa02LNG0476400 15127728-15127941 intergenetic lncRNA (lincRNA) 214 37.85047 1
Osa02LNT0162200.1 2 Osa02LNG0162200 15138891-15143539 sense lncRNA 2478 56.41646 2
Osa02LNT0162300.1 2 Osa02LNG0162300 15211332-15211584 intergenetic lncRNA (lincRNA) 253 37.54941 1
Osa02LNT0143100.3 2 Osa02LNG0143100 1532451-1535776 long non-coding(lnc) isoforms of known genes 1263 43.46793 9
Osa02LNT0143100.2 2 Osa02LNG0143100 1532451-1535776 long non-coding(lnc) isoforms of known genes 1254 43.54067 9
Osa02LNT0143100.1 2 Osa02LNG0143100 1532451-1535776 long non-coding(lnc) isoforms of known genes 1345 42.75093 8
Osa02LNT0476600.1 2 Osa02LNG0476600 15373466-15373710 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa02LNT0476500.1 2 Osa02LNG0476500 15373466-15373710 intergenetic lncRNA (lincRNA) 245 28.16327 1
Osa02LNT0476700.1 2 Osa02LNG0476700 15379197-15379468 intergenetic lncRNA (lincRNA) 272 31.25 1
Osa02LNT0476800.1 2 Osa02LNG0476800 15379197-15379468 intergenetic lncRNA (lincRNA) 272 31.25 1