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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0519400.1 5 Osa05LNG0519400 18608281-18608535 intergenetic lncRNA (lincRNA) 255 28.23529 1
Osa05LNT0519500.1 5 Osa05LNG0519500 18608281-18608535 intergenetic lncRNA (lincRNA) 255 28.23529 1
Osa05LNT0519600.1 5 Osa05LNG0519600 18608307-18608509 intergenetic lncRNA (lincRNA) 203 28.57143 1
Osa05LNT0292500.1 5 Osa05LNG0292500 1885155-1888846 long non-coding(lnc) isoforms of known genes 1334 44.52774 4
Osa05LNT0308300.1 5 Osa05LNG0308300 18969361-18969564 Antisense lncRNA 204 39.21569 1
Osa05LNT0308400.1 5 Osa05LNG0308400 19056526-19067981 sense lncRNA 4680 50.9188 15
Osa05LNT0308500.2 5 Osa05LNG0308500 19217268-19224289 long non-coding(lnc) isoforms of known genes 4161 54.84259 9
Osa05LNT0308500.4 5 Osa05LNG0308500 19217268-19224289 long non-coding(lnc) isoforms of known genes 2266 42.63019 7
Osa05LNT0308500.1 5 Osa05LNG0308500 19217268-19224289 long non-coding(lnc) isoforms of known genes 4826 54.5172 9
Osa05LNT0308500.3 5 Osa05LNG0308500 19217268-19224289 long non-coding(lnc) isoforms of known genes 4060 54.60591 8
Osa05LNT0292600.1 5 Osa05LNG0292600 1924276-1927242 long non-coding(lnc) isoforms of known genes 990 54.44444 7
Osa05LNT0308600.1 5 Osa05LNG0308600 19336642-19340835 long non-coding(lnc) isoforms of known genes 3508 40.02281 3
Osa05LNT0308600.2 5 Osa05LNG0308600 19336642-19340835 long non-coding(lnc) isoforms of known genes 1026 49.7076 4
Osa05LNT0308600.3 5 Osa05LNG0308600 19336642-19340835 long non-coding(lnc) isoforms of known genes 2445 40.4908 3
Osa05LNT0308700.1 5 Osa05LNG0308700 19346175-19353382 long non-coding(lnc) isoforms of known genes 2459 48.80033 13
Osa05LNT0308800.1 5 Osa05LNG0308800 19363757-19365922 sense lncRNA 1183 43.36433 3
Osa05LNT0308900.1 5 Osa05LNG0308900 19368978-19373894 long non-coding(lnc) isoforms of known genes 1418 44.64034 13
Osa05LNT0519700.1 5 Osa05LNG0519700 19394188-19394431 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa05LNT0519800.1 5 Osa05LNG0519800 19438080-19438327 intergenetic lncRNA (lincRNA) 248 25.40323 1
Osa05LNT0309000.1 5 Osa05LNG0309000 19609681-19622106 long non-coding(lnc) isoforms of known genes 3023 43.76447 17
Osa05LNT0309100.1 5 Osa05LNG0309100 19624387-19624776 intergenetic lncRNA (lincRNA) 390 66.41026 1
Osa05LNT0309200.1 5 Osa05LNG0309200 19702828-19704986 sense lncRNA 922 50.65076 2
Osa05LNT0309300.1 5 Osa05LNG0309300 19739932-19740208 intergenetic lncRNA (lincRNA) 277 74.72924 1
Osa05LNT0309400.1 5 Osa05LNG0309400 19780205-19784807 long non-coding(lnc) isoforms of known genes 2678 48.39432 10
Osa05LNT0309500.1 5 Osa05LNG0309500 19780994-19781963 long non-coding(lnc) isoforms of known genes 834 43.64508 2
Osa05LNT0309600.1 5 Osa05LNG0309600 19784874-19785621 Antisense lncRNA 295 57.62712 2
Osa05LNT0309700.1 5 Osa05LNG0309700 19894399-19899925 long non-coding(lnc) isoforms of known genes 2597 53.09973 2
Osa05LNT0292700.1 5 Osa05LNG0292700 1998562-2002856 long non-coding(lnc) isoforms of known genes 2535 50.4931 6
Osa05LNT0309900.1 5 Osa05LNG0309900 20102713-20110677 long non-coding(lnc) isoforms of known genes 2475 40.0 11
Osa05LNT0310000.1 5 Osa05LNG0310000 20105088-20105291 intronic lncRNA 204 25.0 1
Osa05LNT0309800.1 5 Osa05LNG0309800 20154040-20156486 sense lncRNA 1873 53.44367 2
Osa05LNT0310100.1 5 Osa05LNG0310100 20243972-20247808 long non-coding(lnc) isoforms of known genes 2928 54.23497 9
Osa05LNT0310200.1 5 Osa05LNG0310200 20267977-20271119 long non-coding(lnc) isoforms of known genes 2379 44.64061 6
Osa05LNT0310200.3 5 Osa05LNG0310200 20267977-20271119 long non-coding(lnc) isoforms of known genes 2390 44.81172 6
Osa05LNT0310200.2 5 Osa05LNG0310200 20267977-20271119 long non-coding(lnc) isoforms of known genes 2373 44.62705 6
Osa05LNT0310300.2 5 Osa05LNG0310300 20278636-20282097 long non-coding(lnc) isoforms of known genes 2682 49.36614 3
Osa05LNT0310300.1 5 Osa05LNG0310300 20278636-20282097 long non-coding(lnc) isoforms of known genes 2679 49.34677 3
Osa05LNT0310400.1 5 Osa05LNG0310400 20414809-20418507 long non-coding(lnc) isoforms of known genes 1195 62.00837 3
Osa05LNT0310500.1 5 Osa05LNG0310500 20484964-20490119 long non-coding(lnc) isoforms of known genes 2019 49.13323 14
Osa05LNT0310600.1 5 Osa05LNG0310600 20568922-20573378 long non-coding(lnc) isoforms of known genes 1587 46.3138 7
Osa05LNT0310700.1 5 Osa05LNG0310700 20659890-20660950 intergenetic lncRNA (lincRNA) 975 45.74359 2
Osa05LNT0310800.1 5 Osa05LNG0310800 20728020-20735339 sense lncRNA 2373 44.45849 13
Osa05LNT0310800.2 5 Osa05LNG0310800 20728020-20735339 sense lncRNA 2541 41.00748 10
Osa05LNT0310900.1 5 Osa05LNG0310900 20816604-20820498 long non-coding(lnc) isoforms of known genes 2755 49.50998 4
Osa05LNT0520000.1 5 Osa05LNG0520000 20863367-20863640 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa05LNT0519900.1 5 Osa05LNG0519900 20863367-20863640 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa05LNT0311000.1 5 Osa05LNG0311000 20898521-20903638 long non-coding(lnc) isoforms of known genes 2412 49.25373 5
Osa05LNT0311100.2 5 Osa05LNG0311100 20944820-20951325 long non-coding(lnc) isoforms of known genes 3096 54.03747 10
Osa05LNT0311100.1 5 Osa05LNG0311100 20944820-20951325 long non-coding(lnc) isoforms of known genes 3680 53.125 11
Osa05LNT0311200.1 5 Osa05LNG0311200 21126879-21129643 long non-coding(lnc) isoforms of known genes 1431 48.07827 9
Osa05LNT0311300.1 5 Osa05LNG0311300 21184600-21192934 long non-coding(lnc) isoforms of known genes 3328 51.89303 3
Osa05LNT0311400.1 5 Osa05LNG0311400 21231712-21232751 intergenetic lncRNA (lincRNA) 1040 61.25 1
Osa05LNT0292800.1 5 Osa05LNG0292800 2131194-2131737 intergenetic lncRNA (lincRNA) 544 58.27206 1
Osa05LNT0311500.1 5 Osa05LNG0311500 21342205-21345468 long non-coding(lnc) isoforms of known genes 1971 61.74531 7
Osa05LNT0520100.1 5 Osa05LNG0520100 21352189-21352449 intergenetic lncRNA (lincRNA) 261 28.35249 1
Osa05LNT0311600.1 5 Osa05LNG0311600 21415028-21420708 long non-coding(lnc) isoforms of known genes 1978 47.97776 14
Osa05LNT0311600.2 5 Osa05LNG0311600 21415028-21420708 long non-coding(lnc) isoforms of known genes 2688 44.60565 14
Osa05LNT0311700.2 5 Osa05LNG0311700 21451049-21457121 sense lncRNA 5987 42.20812 2
Osa05LNT0311700.1 5 Osa05LNG0311700 21451049-21457121 sense lncRNA 2567 45.07207 4
Osa05LNT0311800.1 5 Osa05LNG0311800 21567370-21571263 long non-coding(lnc) isoforms of known genes 1791 52.93132 3
Osa05LNT0311900.2 5 Osa05LNG0311900 21613710-21616111 long non-coding(lnc) isoforms of known genes 1857 42.11093 3
Osa05LNT0311900.1 5 Osa05LNG0311900 21613710-21616111 long non-coding(lnc) isoforms of known genes 1846 42.36186 3
Osa05LNT0311900.3 5 Osa05LNG0311900 21613710-21616111 long non-coding(lnc) isoforms of known genes 1465 44.7099 4
Osa05LNT0312000.1 5 Osa05LNG0312000 21699330-21703558 long non-coding(lnc) isoforms of known genes 1691 59.43229 4
Osa05LNT0312100.1 5 Osa05LNG0312100 21705751-21707209 sense lncRNA 841 50.05945 2
Osa05LNT0312300.1 5 Osa05LNG0312300 21889050-21893084 Antisense lncRNA 2650 39.66038 8
Osa05LNT0312300.2 5 Osa05LNG0312300 21889050-21893084 Antisense lncRNA 2141 40.72863 9
Osa05LNT0312200.1 5 Osa05LNG0312200 21894387-21896812 long non-coding(lnc) isoforms of known genes 2197 50.02276 3
Osa05LNT0312500.1 5 Osa05LNG0312500 21942980-21959335 long non-coding(lnc) isoforms of known genes 6458 44.73521 23
Osa05LNT0312400.1 5 Osa05LNG0312400 22033934-22038045 Antisense lncRNA 1041 41.69068 6
Osa05LNT0312400.2 5 Osa05LNG0312400 22033934-22038045 Antisense lncRNA 2210 37.55656 6
Osa05LNT0293000.2 5 Osa05LNG0293000 2204256-2207098 long non-coding(lnc) isoforms of known genes 1622 39.95068 2
Osa05LNT0293000.1 5 Osa05LNG0293000 2204256-2207098 long non-coding(lnc) isoforms of known genes 593 51.43339 3
Osa05LNT0292900.1 5 Osa05LNG0292900 2207519-2209503 intergenetic lncRNA (lincRNA) 912 45.39474 2
Osa05LNT0312600.1 5 Osa05LNG0312600 22160242-22162325 long non-coding(lnc) isoforms of known genes 905 53.92265 4
Osa05LNT0312700.1 5 Osa05LNG0312700 22214698-22219616 long non-coding(lnc) isoforms of known genes 1918 49.00938 11
Osa05LNT0312800.1 5 Osa05LNG0312800 22238995-22241620 long non-coding(lnc) isoforms of known genes 2286 58.88014 5
Osa05LNT0312900.1 5 Osa05LNG0312900 22263224-22266786 long non-coding(lnc) isoforms of known genes 1359 51.3613 9
Osa05LNT0312900.2 5 Osa05LNG0312900 22263224-22266786 long non-coding(lnc) isoforms of known genes 1354 51.32939 9
Osa05LNT0313000.1 5 Osa05LNG0313000 22303574-22306359 long non-coding(lnc) isoforms of known genes 2020 43.21782 5
Osa05LNT0313100.1 5 Osa05LNG0313100 22389647-22389864 Antisense lncRNA 218 35.77982 1
Osa05LNT0313200.1 5 Osa05LNG0313200 22430052-22435756 intergenetic lncRNA (lincRNA) 5705 42.43646 1
Osa05LNT0313300.1 5 Osa05LNG0313300 22440648-22445327 long non-coding(lnc) isoforms of known genes 1705 50.49853 11
Osa05LNT0520300.1 5 Osa05LNG0520300 22543048-22543321 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa05LNT0520200.1 5 Osa05LNG0520200 22543048-22543321 intergenetic lncRNA (lincRNA) 274 29.56204 1
Osa05LNT0313400.1 5 Osa05LNG0313400 22553231-22561060 long non-coding(lnc) isoforms of known genes 2570 45.05837 9
Osa05LNT0293100.1 5 Osa05LNG0293100 2258068-2259902 sense lncRNA 1733 50.25967 2
Osa05LNT0313500.1 5 Osa05LNG0313500 22630231-22632486 long non-coding(lnc) isoforms of known genes 774 52.06718 6
Osa05LNT0313600.1 5 Osa05LNG0313600 22706591-22714674 long non-coding(lnc) isoforms of known genes 4834 46.89698 11
Osa05LNT0313600.2 5 Osa05LNG0313600 22706591-22714674 long non-coding(lnc) isoforms of known genes 4710 47.19745 11
Osa05LNT0313700.1 5 Osa05LNG0313700 22725538-22734007 long non-coding(lnc) isoforms of known genes 3937 44.09449 13
Osa05LNT0313700.2 5 Osa05LNG0313700 22725538-22734007 long non-coding(lnc) isoforms of known genes 3554 45.30107 15
Osa05LNT0313800.1 5 Osa05LNG0313800 22770094-22774072 long non-coding(lnc) isoforms of known genes 1209 54.92142 8
Osa05LNT0314000.1 5 Osa05LNG0314000 22776072-22785036 long non-coding(lnc) isoforms of known genes 4629 44.00518 15
Osa05LNT0313900.1 5 Osa05LNG0313900 22785320-22785638 intergenetic lncRNA (lincRNA) 319 73.04075 1
Osa05LNT0314100.1 5 Osa05LNG0314100 22869859-22873172 intergenetic lncRNA (lincRNA) 3314 44.38745 1
Osa05LNT0314100.2 5 Osa05LNG0314100 22869859-22873172 intergenetic lncRNA (lincRNA) 2836 45.38082 3
Osa05LNT0314200.1 5 Osa05LNG0314200 22904302-22906120 intergenetic lncRNA (lincRNA) 1143 46.89414 2
Osa05LNT0314300.1 5 Osa05LNG0314300 22946525-22946733 intergenetic lncRNA (lincRNA) 209 43.0622 1
Osa05LNT0314400.1 5 Osa05LNG0314400 22955512-22960812 long non-coding(lnc) isoforms of known genes 3201 46.42299 5