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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0314500.1 5 Osa05LNG0314500 23096797-23098577 sense lncRNA 1576 39.72081 3
Osa05LNT0314500.2 5 Osa05LNG0314500 23096797-23098577 sense lncRNA 1384 39.88439 3
Osa05LNT0314600.1 5 Osa05LNG0314600 23112962-23117179 long non-coding(lnc) isoforms of known genes 2491 45.32316 9
Osa05LNT0314700.1 5 Osa05LNG0314700 23273472-23280905 long non-coding(lnc) isoforms of known genes 3267 43.52617 12
Osa05LNT0314700.2 5 Osa05LNG0314700 23273472-23280905 long non-coding(lnc) isoforms of known genes 1579 51.29829 13
Osa05LNT0293200.1 5 Osa05LNG0293200 2334716-2339647 long non-coding(lnc) isoforms of known genes 1443 46.50035 8
Osa05LNT0293300.1 5 Osa05LNG0293300 2353949-2357744 Antisense lncRNA 1051 49.19125 5
Osa05LNT0314800.1 5 Osa05LNG0314800 23581039-23586717 long non-coding(lnc) isoforms of known genes 4019 46.57875 5
Osa05LNT0314900.1 5 Osa05LNG0314900 23622731-23627025 long non-coding(lnc) isoforms of known genes 2447 54.14794 5
Osa05LNT0315000.1 5 Osa05LNG0315000 23668165-23669353 intergenetic lncRNA (lincRNA) 1189 62.15307 1
Osa05LNT0315100.1 5 Osa05LNG0315100 23672914-23677150 long non-coding(lnc) isoforms of known genes 3193 42.21735 6
Osa05LNT0315100.2 5 Osa05LNG0315100 23672914-23677150 long non-coding(lnc) isoforms of known genes 3050 42.68852 7
Osa05LNT0315200.1 5 Osa05LNG0315200 23688076-23691187 long non-coding(lnc) isoforms of known genes 2446 57.31807 6
Osa05LNT0315300.1 5 Osa05LNG0315300 23688654-23689187 Antisense lncRNA 534 52.99625 1
Osa05LNT0293400.1 5 Osa05LNG0293400 2378503-2381834 long non-coding(lnc) isoforms of known genes 1387 50.03605 3
Osa05LNT0315400.1 5 Osa05LNG0315400 23798402-23799113 long non-coding(lnc) isoforms of known genes 517 52.99807 3
Osa05LNT0315500.1 5 Osa05LNG0315500 23873730-23877936 sense lncRNA 2205 42.35828 9
Osa05LNT0315600.1 5 Osa05LNG0315600 23883054-23885939 long non-coding(lnc) isoforms of known genes 1937 57.76975 4
Osa05LNT0315600.2 5 Osa05LNG0315600 23883054-23885939 long non-coding(lnc) isoforms of known genes 2026 59.27937 5
Osa05LNT0315600.3 5 Osa05LNG0315600 23883054-23885939 long non-coding(lnc) isoforms of known genes 2236 59.03399 3
Osa05LNT0315700.1 5 Osa05LNG0315700 23931558-23936901 long non-coding(lnc) isoforms of known genes 2823 43.64152 11
Osa05LNT0315900.1 5 Osa05LNG0315900 23988433-23993944 long non-coding(lnc) isoforms of known genes 3909 39.75441 6
Osa05LNT0315800.1 5 Osa05LNG0315800 24000267-24002607 long non-coding(lnc) isoforms of known genes 1780 50.73034 4
Osa05LNT0316000.1 5 Osa05LNG0316000 24107367-24109663 long non-coding(lnc) isoforms of known genes 1060 47.26415 5
Osa05LNT0316100.2 5 Osa05LNG0316100 24137727-24140854 long non-coding(lnc) isoforms of known genes 1451 51.55065 3
Osa05LNT0316100.1 5 Osa05LNG0316100 24137727-24140854 long non-coding(lnc) isoforms of known genes 1228 54.39739 4
Osa05LNT0316200.2 5 Osa05LNG0316200 24154090-24158054 long non-coding(lnc) isoforms of known genes 1468 49.38692 7
Osa05LNT0316200.1 5 Osa05LNG0316200 24154090-24158054 long non-coding(lnc) isoforms of known genes 2046 44.96579 6
Osa05LNT0316300.2 5 Osa05LNG0316300 24453133-24469242 long non-coding(lnc) isoforms of known genes 3999 41.91048 7
Osa05LNT0316300.1 5 Osa05LNG0316300 24453133-24469242 long non-coding(lnc) isoforms of known genes 3981 41.8739 7
Osa05LNT0316400.1 5 Osa05LNG0316400 24540877-24544098 sense lncRNA 2137 49.9766 3
Osa05LNT0316500.1 5 Osa05LNG0316500 24552461-24555115 long non-coding(lnc) isoforms of known genes 1428 47.47899 6
Osa05LNT0316600.1 5 Osa05LNG0316600 24565176-24565997 Antisense lncRNA 397 38.03526 2
Osa05LNT0316700.1 5 Osa05LNG0316700 24589287-24593259 long non-coding(lnc) isoforms of known genes 2067 44.65409 8
Osa05LNT0316700.2 5 Osa05LNG0316700 24589287-24593259 long non-coding(lnc) isoforms of known genes 1548 49.4186 9
Osa05LNT0316800.1 5 Osa05LNG0316800 24674485-24676244 long non-coding(lnc) isoforms of known genes 1362 56.97504 5
Osa05LNT0316900.1 5 Osa05LNG0316900 24756592-24757536 intergenetic lncRNA (lincRNA) 733 50.20464 2
Osa05LNT0317000.1 5 Osa05LNG0317000 24785001-24785390 intergenetic lncRNA (lincRNA) 390 59.23077 1
Osa05LNT0520400.1 5 Osa05LNG0520400 24882962-24883176 intergenetic lncRNA (lincRNA) 215 25.11628 1
Osa05LNT0520600.1 5 Osa05LNG0520600 24889800-24890015 intergenetic lncRNA (lincRNA) 216 36.11111 1
Osa05LNT0520500.1 5 Osa05LNG0520500 24889800-24890015 intergenetic lncRNA (lincRNA) 216 36.11111 1
Osa05LNT0317100.1 5 Osa05LNG0317100 25041565-25043493 long non-coding(lnc) isoforms of known genes 1218 48.35796 6
Osa05LNT0520700.1 5 Osa05LNG0520700 25070964-25071209 intergenetic lncRNA (lincRNA) 246 25.20325 1
Osa05LNT0317200.1 5 Osa05LNG0317200 25193479-25197518 long non-coding(lnc) isoforms of known genes 537 52.70019 2
Osa05LNT0293500.1 5 Osa05LNG0293500 2528977-2536253 long non-coding(lnc) isoforms of known genes 2166 46.99908 19
Osa05LNT0317300.1 5 Osa05LNG0317300 25321363-25330862 long non-coding(lnc) isoforms of known genes 2015 45.65757 18
Osa05LNT0317400.1 5 Osa05LNG0317400 25781845-25788535 long non-coding(lnc) isoforms of known genes 3014 46.11812 20
Osa05LNT0317400.2 5 Osa05LNG0317400 25781845-25788535 long non-coding(lnc) isoforms of known genes 1414 43.77652 9
Osa05LNT0317500.1 5 Osa05LNG0317500 25788842-25793522 long non-coding(lnc) isoforms of known genes 3000 49.83333 8
Osa05LNT0293600.1 5 Osa05LNG0293600 2584804-2590111 long non-coding(lnc) isoforms of known genes 2792 52.68625 11
Osa05LNT0317600.2 5 Osa05LNG0317600 25922422-25926084 long non-coding(lnc) isoforms of known genes 4374 40.39781 7
Osa05LNT0317600.1 5 Osa05LNG0317600 25922422-25926084 long non-coding(lnc) isoforms of known genes 1452 48.27824 10
Osa05LNT0317700.1 5 Osa05LNG0317700 26096071-26099189 long non-coding(lnc) isoforms of known genes 1625 49.72308 5
Osa05LNT0317800.1 5 Osa05LNG0317800 26237497-26245891 long non-coding(lnc) isoforms of known genes 3699 50.04055 14
Osa05LNT0293700.1 5 Osa05LNG0293700 2625815-2630378 long non-coding(lnc) isoforms of known genes 2004 47.60479 12
Osa05LNT0317900.1 5 Osa05LNG0317900 26322392-26326304 long non-coding(lnc) isoforms of known genes 1590 47.42138 9
Osa05LNT0318000.1 5 Osa05LNG0318000 26347162-26351609 long non-coding(lnc) isoforms of known genes 2064 45.83333 11
Osa05LNT0290500.1 5 Osa05LNG0290500 263744-266323 long non-coding(lnc) isoforms of known genes 1152 47.30903 8
Osa05LNT0318100.1 5 Osa05LNG0318100 26396141-26396789 intergenetic lncRNA (lincRNA) 649 46.84129 1
Osa05LNT0318200.1 5 Osa05LNG0318200 26418688-26422465 long non-coding(lnc) isoforms of known genes 1677 50.02982 9
Osa05LNT0318200.2 5 Osa05LNG0318200 26418688-26422465 long non-coding(lnc) isoforms of known genes 1681 50.02974 9
Osa05LNT0318300.1 5 Osa05LNG0318300 26596452-26602014 long non-coding(lnc) isoforms of known genes 2710 41.14391 10
Osa05LNT0318400.1 5 Osa05LNG0318400 26634885-26640861 long non-coding(lnc) isoforms of known genes 2357 46.16037 15
Osa05LNT0318700.1 5 Osa05LNG0318700 26705076-26708198 long non-coding(lnc) isoforms of known genes 1934 56.77353 4
Osa05LNT0293800.1 5 Osa05LNG0293800 2672369-2678630 long non-coding(lnc) isoforms of known genes 2063 44.6922 11
Osa05LNT0520800.1 5 Osa05LNG0520800 26739461-26739735 Antisense lncRNA 275 25.09091 1
Osa05LNT0520900.1 5 Osa05LNG0520900 26739461-26739735 Antisense lncRNA 275 25.09091 1
Osa05LNT0318500.1 5 Osa05LNG0318500 26794411-26801239 long non-coding(lnc) isoforms of known genes 3223 41.76233 18
Osa05LNT0290600.1 5 Osa05LNG0290600 267986-278127 long non-coding(lnc) isoforms of known genes 3604 45.78246 12
Osa05LNT0318600.2 5 Osa05LNG0318600 26815665-26818731 long non-coding(lnc) isoforms of known genes 1197 54.38596 4
Osa05LNT0318600.1 5 Osa05LNG0318600 26815665-26818731 long non-coding(lnc) isoforms of known genes 1184 54.72973 4
Osa05LNT0318800.1 5 Osa05LNG0318800 26846176-26847985 sense lncRNA 1701 52.32216 2
Osa05LNT0318900.1 5 Osa05LNG0318900 26902013-26905007 long non-coding(lnc) isoforms of known genes 764 51.3089 4
Osa05LNT0319100.1 5 Osa05LNG0319100 26911172-26914749 long non-coding(lnc) isoforms of known genes 2033 43.53173 4
Osa05LNT0319100.2 5 Osa05LNG0319100 26911172-26914749 long non-coding(lnc) isoforms of known genes 2011 43.61014 4
Osa05LNT0319000.1 5 Osa05LNG0319000 26921087-26923380 long non-coding(lnc) isoforms of known genes 644 42.85714 4
Osa05LNT0319200.1 5 Osa05LNG0319200 26966645-26969821 long non-coding(lnc) isoforms of known genes 1443 49.41095 11
Osa05LNT0319400.1 5 Osa05LNG0319400 26995748-26999172 long non-coding(lnc) isoforms of known genes 1876 47.28145 6
Osa05LNT0319300.1 5 Osa05LNG0319300 27036923-27039229 long non-coding(lnc) isoforms of known genes 779 44.28755 4
Osa05LNT0319500.1 5 Osa05LNG0319500 27163275-27166806 long non-coding(lnc) isoforms of known genes 1064 47.93233 6
Osa05LNT0319600.1 5 Osa05LNG0319600 27224856-27227332 long non-coding(lnc) isoforms of known genes 777 54.69755 5
Osa05LNT0319700.1 5 Osa05LNG0319700 27236794-27243388 long non-coding(lnc) isoforms of known genes 2348 48.63714 13
Osa05LNT0319800.1 5 Osa05LNG0319800 27310808-27314759 long non-coding(lnc) isoforms of known genes 1360 51.02941 8
Osa05LNT0293900.1 5 Osa05LNG0293900 2737045-2737565 Antisense lncRNA 294 40.47619 2
Osa05LNT0320000.1 5 Osa05LNG0320000 27383444-27387674 long non-coding(lnc) isoforms of known genes 3403 48.92742 5
Osa05LNT0319900.1 5 Osa05LNG0319900 27403242-27404260 sense lncRNA 795 65.15723 2
Osa05LNT0320100.1 5 Osa05LNG0320100 27474112-27479029 long non-coding(lnc) isoforms of known genes 2065 46.97337 11
Osa05LNT0320100.3 5 Osa05LNG0320100 27474112-27479029 long non-coding(lnc) isoforms of known genes 2070 47.00483 11
Osa05LNT0320100.2 5 Osa05LNG0320100 27474112-27479029 long non-coding(lnc) isoforms of known genes 3326 43.86651 11
Osa05LNT0294000.1 5 Osa05LNG0294000 2748512-2752887 long non-coding(lnc) isoforms of known genes 3478 40.36803 7
Osa05LNT0521000.1 5 Osa05LNG0521000 27572103-27572356 intergenetic lncRNA (lincRNA) 254 38.18898 1
Osa05LNT0320200.1 5 Osa05LNG0320200 27592305-27598783 long non-coding(lnc) isoforms of known genes 5710 44.5359 4
Osa05LNT0294100.1 5 Osa05LNG0294100 2767388-2775242 long non-coding(lnc) isoforms of known genes 1524 47.76903 17
Osa05LNT0320300.1 5 Osa05LNG0320300 27733895-27738318 long non-coding(lnc) isoforms of known genes 3320 43.46386 7
Osa05LNT0320400.1 5 Osa05LNG0320400 27740218-27749755 long non-coding(lnc) isoforms of known genes 3938 43.60081 12
Osa05LNT0320500.1 5 Osa05LNG0320500 27759551-27763654 long non-coding(lnc) isoforms of known genes 2267 49.13983 8
Osa05LNT0294200.2 5 Osa05LNG0294200 2777390-2783543 long non-coding(lnc) isoforms of known genes 2773 43.09412 14
Osa05LNT0294200.1 5 Osa05LNG0294200 2777390-2783543 long non-coding(lnc) isoforms of known genes 2744 43.22157 14
Osa05LNT0320600.1 5 Osa05LNG0320600 27793450-27794243 intergenetic lncRNA (lincRNA) 794 47.98489 1
Osa05LNT0320700.1 5 Osa05LNG0320700 27886611-27889407 long non-coding(lnc) isoforms of known genes 2011 45.89756 7