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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0143800.1 2 Osa02LNG0143800 1708916-1718007 long non-coding(lnc) isoforms of known genes 3575 46.51748 17
Osa02LNT0164200.1 2 Osa02LNG0164200 17245012-17253809 long non-coding(lnc) isoforms of known genes 1254 42.58373 9
Osa02LNT0164300.1 2 Osa02LNG0164300 17258255-17265927 long non-coding(lnc) isoforms of known genes 1424 49.7191 11
Osa02LNT0164500.3 2 Osa02LNG0164500 17271329-17274241 Antisense lncRNA 791 50.31606 5
Osa02LNT0164500.2 2 Osa02LNG0164500 17271329-17274241 long non-coding(lnc) isoforms of known genes 1409 50.60326 11
Osa02LNT0164500.1 2 Osa02LNG0164500 17271329-17274241 Antisense lncRNA 913 49.83571 5
Osa02LNT0164600.1 2 Osa02LNG0164600 17274344-17275865 long non-coding(lnc) isoforms of known genes 1249 69.09528 3
Osa02LNT0164700.1 2 Osa02LNG0164700 17308143-17315813 long non-coding(lnc) isoforms of known genes 1479 46.99121 9
Osa02LNT0143900.1 2 Osa02LNG0143900 1734446-1736136 long non-coding(lnc) isoforms of known genes 1203 44.3059 5
Osa02LNT0164400.1 2 Osa02LNG0164400 17461173-17462456 intergenetic lncRNA (lincRNA) 1284 60.66978 1
Osa02LNT0164800.1 2 Osa02LNG0164800 17489975-17505476 long non-coding(lnc) isoforms of known genes 3871 41.46215 24
Osa02LNT0478500.1 2 Osa02LNG0478500 17517043-17517283 intergenetic lncRNA (lincRNA) 241 45.22822 1
Osa02LNT0144000.1 2 Osa02LNG0144000 1754546-1757796 long non-coding(lnc) isoforms of known genes 1825 42.52055 10
Osa02LNT0144100.2 2 Osa02LNG0144100 1758456-1764600 intergenetic lncRNA (lincRNA) 2383 43.47461 19
Osa02LNT0144100.1 2 Osa02LNG0144100 1758456-1764600 intergenetic lncRNA (lincRNA) 2259 43.73617 19
Osa02LNT0478600.1 2 Osa02LNG0478600 17636161-17636433 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa02LNT0478700.1 2 Osa02LNG0478700 17636161-17636433 intergenetic lncRNA (lincRNA) 273 26.37363 1
Osa02LNT0165000.1 2 Osa02LNG0165000 17718578-17720440 long non-coding(lnc) isoforms of known genes 440 42.72727 3
Osa02LNT0164900.1 2 Osa02LNG0164900 17755396-17756199 intergenetic lncRNA (lincRNA) 804 62.06468 1
Osa02LNT0165100.1 2 Osa02LNG0165100 17759906-17764027 intergenetic lncRNA (lincRNA) 2950 38.94915 4
Osa02LNT0478800.1 2 Osa02LNG0478800 17811815-17812059 intergenetic lncRNA (lincRNA) 245 26.53061 1
Osa02LNT0165200.1 2 Osa02LNG0165200 17859680-17860232 intergenetic lncRNA (lincRNA) 553 57.86618 1
Osa02LNT0165300.1 2 Osa02LNG0165300 17886590-17889823 long non-coding(lnc) isoforms of known genes 2777 38.49478 4
Osa02LNT0165400.1 2 Osa02LNG0165400 17958536-17961703 long non-coding(lnc) isoforms of known genes 2322 45.34884 3
Osa02LNT0144200.1 2 Osa02LNG0144200 1826675-1829240 long non-coding(lnc) isoforms of known genes 1221 59.86896 3
Osa02LNT0165500.1 2 Osa02LNG0165500 18311053-18314355 long non-coding(lnc) isoforms of known genes 2200 44.04545 6
Osa02LNT0144300.2 2 Osa02LNG0144300 1837765-1838864 long non-coding(lnc) isoforms of known genes 875 47.77143 3
Osa02LNT0144300.1 2 Osa02LNG0144300 1837765-1838864 long non-coding(lnc) isoforms of known genes 653 50.84227 2
Osa02LNT0165600.1 2 Osa02LNG0165600 18379667-18380274 intergenetic lncRNA (lincRNA) 608 49.50658 1
Osa02LNT0139700.1 2 Osa02LNG0139700 183982-185188 long non-coding(lnc) isoforms of known genes 1114 60.77199 2
Osa02LNT0165700.1 2 Osa02LNG0165700 18501234-18509632 long non-coding(lnc) isoforms of known genes 3077 43.25642 12
Osa02LNT0144400.1 2 Osa02LNG0144400 1850981-1854705 long non-coding(lnc) isoforms of known genes 1978 41.65824 10
Osa02LNT0165800.1 2 Osa02LNG0165800 18657686-18661609 long non-coding(lnc) isoforms of known genes 1239 64.32607 2
Osa02LNT0166000.1 2 Osa02LNG0166000 18713602-18717331 long non-coding(lnc) isoforms of known genes 614 52.443 3
Osa02LNT0165900.1 2 Osa02LNG0165900 18731387-18731767 intergenetic lncRNA (lincRNA) 381 38.05774 1
Osa02LNT0166100.1 2 Osa02LNG0166100 18786569-18786874 intergenetic lncRNA (lincRNA) 306 31.04575 1
Osa02LNT0166200.1 2 Osa02LNG0166200 18827027-18831743 long non-coding(lnc) isoforms of known genes 1901 43.92425 14
Osa02LNT0166300.1 2 Osa02LNG0166300 18849376-18849603 intronic lncRNA 228 49.12281 1
Osa02LNT0166400.1 2 Osa02LNG0166400 18889930-18896996 long non-coding(lnc) isoforms of known genes 3195 42.19092 13
Osa02LNT0166400.3 2 Osa02LNG0166400 18889930-18896996 long non-coding(lnc) isoforms of known genes 1749 45.62607 14
Osa02LNT0166400.2 2 Osa02LNG0166400 18889930-18896996 long non-coding(lnc) isoforms of known genes 2031 43.77154 14
Osa02LNT0166500.4 2 Osa02LNG0166500 18994018-19001009 long non-coding(lnc) isoforms of known genes 2019 41.10946 12
Osa02LNT0166500.3 2 Osa02LNG0166500 18994018-19001009 long non-coding(lnc) isoforms of known genes 3599 44.65129 15
Osa02LNT0166500.2 2 Osa02LNG0166500 18994018-19001009 long non-coding(lnc) isoforms of known genes 3364 45.65993 15
Osa02LNT0166500.1 2 Osa02LNG0166500 18994018-19001009 long non-coding(lnc) isoforms of known genes 3256 45.76167 16
Osa02LNT0144500.1 2 Osa02LNG0144500 1913186-1915256 long non-coding(lnc) isoforms of known genes 1888 58.31568 2
Osa02LNT0166600.1 2 Osa02LNG0166600 19176516-19179938 sense lncRNA 3098 49.90316 2
Osa02LNT0166700.1 2 Osa02LNG0166700 19251183-19251714 intergenetic lncRNA (lincRNA) 532 55.07519 1
Osa02LNT0166800.1 2 Osa02LNG0166800 19256918-19260039 long non-coding(lnc) isoforms of known genes 1373 48.94392 5
Osa02LNT0166800.2 2 Osa02LNG0166800 19256918-19260039 long non-coding(lnc) isoforms of known genes 1994 44.98495 5