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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0320800.1 5 Osa05LNG0320800 27950781-27953229 long non-coding(lnc) isoforms of known genes 1750 44.8 7
Osa05LNT0320900.1 5 Osa05LNG0320900 27958358-27962817 long non-coding(lnc) isoforms of known genes 2840 49.64789 11
Osa05LNT0320900.2 5 Osa05LNG0320900 27958358-27962817 long non-coding(lnc) isoforms of known genes 2843 49.63067 11
Osa05LNT0321000.1 5 Osa05LNG0321000 27975701-27987045 long non-coding(lnc) isoforms of known genes 6470 47.6507 18
Osa05LNT0321100.1 5 Osa05LNG0321100 28005260-28012322 long non-coding(lnc) isoforms of known genes 3418 47.77648 14
Osa05LNT0321200.1 5 Osa05LNG0321200 28035563-28042695 long non-coding(lnc) isoforms of known genes 1322 49.01664 9
Osa05LNT0321300.2 5 Osa05LNG0321300 28070880-28076510 long non-coding(lnc) isoforms of known genes 2645 44.61248 5
Osa05LNT0321300.1 5 Osa05LNG0321300 28070880-28076510 long non-coding(lnc) isoforms of known genes 2680 45.5597 7
Osa05LNT0321400.1 5 Osa05LNG0321400 28188894-28194017 long non-coding(lnc) isoforms of known genes 3006 45.14305 10
Osa05LNT0321500.2 5 Osa05LNG0321500 28205482-28208652 long non-coding(lnc) isoforms of known genes 908 45.59471 7
Osa05LNT0321500.1 5 Osa05LNG0321500 28205482-28208652 long non-coding(lnc) isoforms of known genes 927 45.30744 7
Osa05LNT0321600.1 5 Osa05LNG0321600 28242072-28244772 long non-coding(lnc) isoforms of known genes 1604 46.25935 9
Osa05LNT0294300.1 5 Osa05LNG0294300 2834206-2840843 long non-coding(lnc) isoforms of known genes 2829 45.66985 18
Osa05LNT0321700.1 5 Osa05LNG0321700 28478301-28482901 long non-coding(lnc) isoforms of known genes 3182 55.62539 5
Osa05LNT0321800.1 5 Osa05LNG0321800 28539760-28543049 long non-coding(lnc) isoforms of known genes 1590 46.98113 4
Osa05LNT0321900.1 5 Osa05LNG0321900 28622588-28624564 long non-coding(lnc) isoforms of known genes 1656 41.12319 4
Osa05LNT0321900.2 5 Osa05LNG0321900 28622588-28624564 long non-coding(lnc) isoforms of known genes 1574 41.67726 5
Osa05LNT0521100.1 5 Osa05LNG0521100 28689079-28689304 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa05LNT0290700.1 5 Osa05LNG0290700 287362-290784 long non-coding(lnc) isoforms of known genes 1057 44.27625 8
Osa05LNT0322000.1 5 Osa05LNG0322000 28743711-28751662 long non-coding(lnc) isoforms of known genes 2153 57.68695 12
Osa05LNT0322000.2 5 Osa05LNG0322000 28743711-28751662 long non-coding(lnc) isoforms of known genes 2520 49.68254 12
Osa05LNT0322100.1 5 Osa05LNG0322100 28767134-28774079 long non-coding(lnc) isoforms of known genes 1820 45.0 15
Osa05LNT0322200.1 5 Osa05LNG0322200 28897436-28912194 long non-coding(lnc) isoforms of known genes 1606 44.76961 7
Osa05LNT0322200.2 5 Osa05LNG0322200 28897436-28912194 long non-coding(lnc) isoforms of known genes 1538 44.9935 6
Osa05LNT0322300.1 5 Osa05LNG0322300 28919870-28921443 long non-coding(lnc) isoforms of known genes 666 58.40841 4
Osa05LNT0294400.1 5 Osa05LNG0294400 2892746-2898791 long non-coding(lnc) isoforms of known genes 5255 40.8373 2
Osa05LNT0294400.2 5 Osa05LNG0294400 2892746-2898791 long non-coding(lnc) isoforms of known genes 5121 40.89045 3
Osa05LNT0322400.1 5 Osa05LNG0322400 28960225-28965678 long non-coding(lnc) isoforms of known genes 2105 41.80523 16
Osa05LNT0521200.1 5 Osa05LNG0521200 28982932-28983148 intergenetic lncRNA (lincRNA) 217 25.34562 1
Osa05LNT0294500.3 5 Osa05LNG0294500 2906339-2913774 long non-coding(lnc) isoforms of known genes 3174 45.71519 15
Osa05LNT0294500.2 5 Osa05LNG0294500 2906339-2913774 long non-coding(lnc) isoforms of known genes 3035 45.53542 16
Osa05LNT0294500.1 5 Osa05LNG0294500 2906339-2913774 long non-coding(lnc) isoforms of known genes 3141 45.71792 15
Osa05LNT0322500.1 5 Osa05LNG0322500 29257818-29262204 long non-coding(lnc) isoforms of known genes 3144 53.97583 7
Osa05LNT0322600.1 5 Osa05LNG0322600 29271392-29274798 long non-coding(lnc) isoforms of known genes 2271 45.48657 3
Osa05LNT0322700.1 5 Osa05LNG0322700 29281652-29284348 sense lncRNA 1589 45.87791 6
Osa05LNT0322800.1 5 Osa05LNG0322800 29284596-29286853 long non-coding(lnc) isoforms of known genes 1423 64.5116 5
Osa05LNT0322900.1 5 Osa05LNG0322900 29293506-29304267 long non-coding(lnc) isoforms of known genes 6386 40.46351 16
Osa05LNT0322900.2 5 Osa05LNG0322900 29293506-29304267 long non-coding(lnc) isoforms of known genes 5402 39.59645 9
Osa05LNT0521400.1 5 Osa05LNG0521400 29418798-29419071 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa05LNT0521300.1 5 Osa05LNG0521300 29418798-29419071 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa05LNT0323000.1 5 Osa05LNG0323000 29488014-29492018 Antisense lncRNA 661 41.45234 2
Osa05LNT0323100.1 5 Osa05LNG0323100 29571146-29575990 long non-coding(lnc) isoforms of known genes 2322 47.37295 16
Osa05LNT0323200.1 5 Osa05LNG0323200 29618234-29622923 long non-coding(lnc) isoforms of known genes 1557 46.37123 13
Osa05LNT0323300.1 5 Osa05LNG0323300 29652337-29653169 intergenetic lncRNA (lincRNA) 833 31.45258 1
Osa05LNT0323400.1 5 Osa05LNG0323400 29664055-29666544 long non-coding(lnc) isoforms of known genes 1999 40.27014 6
Osa05LNT0294600.1 5 Osa05LNG0294600 2970911-2972775 long non-coding(lnc) isoforms of known genes 1748 52.17391 2
Osa05LNT0323600.1 5 Osa05LNG0323600 29729419-29740775 long non-coding(lnc) isoforms of known genes 3083 44.11288 25
Osa05LNT0323500.1 5 Osa05LNG0323500 29759285-29761472 long non-coding(lnc) isoforms of known genes 2059 55.94949 2
Osa05LNT0323700.1 5 Osa05LNG0323700 29765669-29767226 intergenetic lncRNA (lincRNA) 841 43.1629 2
Osa05LNT0512100.1 5 Osa05LNG0512100 3128856-3129056 intergenetic lncRNA (lincRNA) 201 48.25871 1
Osa05LNT0512200.1 5 Osa05LNG0512200 3166046-3166315 intergenetic lncRNA (lincRNA) 270 54.07407 1
Osa05LNT0512300.1 5 Osa05LNG0512300 3173777-3174050 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa05LNT0512400.1 5 Osa05LNG0512400 3173777-3174050 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa05LNT0294700.1 5 Osa05LNG0294700 3189795-3195510 long non-coding(lnc) isoforms of known genes 2588 43.3153 5
Osa05LNT0294900.1 5 Osa05LNG0294900 3233024-3237383 long non-coding(lnc) isoforms of known genes 3177 45.89235 6
Osa05LNT0294800.1 5 Osa05LNG0294800 3251082-3256034 long non-coding(lnc) isoforms of known genes 2622 50.87719 11
Osa05LNT0295000.1 5 Osa05LNG0295000 3313455-3319824 long non-coding(lnc) isoforms of known genes 2203 50.0227 15
Osa05LNT0295100.1 5 Osa05LNG0295100 3348862-3352787 long non-coding(lnc) isoforms of known genes 2185 43.79863 10
Osa05LNT0295200.1 5 Osa05LNG0295200 3439304-3443769 long non-coding(lnc) isoforms of known genes 2324 46.21343 9
Osa05LNT0295300.1 5 Osa05LNG0295300 3499107-3507534 long non-coding(lnc) isoforms of known genes 1764 53.23129 5
Osa05LNT0295400.1 5 Osa05LNG0295400 3561007-3571391 long non-coding(lnc) isoforms of known genes 1779 51.88308 10
Osa05LNT0295500.1 5 Osa05LNG0295500 3652897-3653860 long non-coding(lnc) isoforms of known genes 660 43.63636 2
Osa05LNT0295600.1 5 Osa05LNG0295600 3704302-3714723 long non-coding(lnc) isoforms of known genes 7585 45.76137 13
Osa05LNT0295700.2 5 Osa05LNG0295700 3718368-3725411 long non-coding(lnc) isoforms of known genes 5989 41.62631 7
Osa05LNT0295700.3 5 Osa05LNG0295700 3718368-3725411 long non-coding(lnc) isoforms of known genes 5900 41.83051 8
Osa05LNT0295700.1 5 Osa05LNG0295700 3718368-3725411 long non-coding(lnc) isoforms of known genes 5027 41.0185 8
Osa05LNT0290800.1 5 Osa05LNG0290800 372788-375616 long non-coding(lnc) isoforms of known genes 1325 46.49057 5
Osa05LNT0295800.1 5 Osa05LNG0295800 3816363-3817092 Antisense lncRNA 475 46.73684 3
Osa05LNT0295900.1 5 Osa05LNG0295900 3876382-3972390 sense lncRNA 3597 39.67195 2
Osa05LNT0290200.1 5 Osa05LNG0290200 38790-47165 long non-coding(lnc) isoforms of known genes 4754 44.29954 23
Osa05LNT0512500.1 5 Osa05LNG0512500 4030998-4031276 intergenetic lncRNA (lincRNA) 279 56.98925 1
Osa05LNT0296000.1 5 Osa05LNG0296000 4096771-4100732 long non-coding(lnc) isoforms of known genes 1273 46.97565 11
Osa05LNT0290900.1 5 Osa05LNG0290900 421312-432965 long non-coding(lnc) isoforms of known genes 4636 44.21915 26
Osa05LNT0296100.1 5 Osa05LNG0296100 4309927-4310629 intergenetic lncRNA (lincRNA) 620 53.06452 2
Osa05LNT0296200.1 5 Osa05LNG0296200 4801878-4803277 intergenetic lncRNA (lincRNA) 1400 57.64286 1
Osa05LNT0512600.1 5 Osa05LNG0512600 4807213-4807522 intergenetic lncRNA (lincRNA) 310 53.22581 1
Osa05LNT0296300.1 5 Osa05LNG0296300 4828195-4828820 intergenetic lncRNA (lincRNA) 626 45.84665 1
Osa05LNT0296400.1 5 Osa05LNG0296400 4831545-4835649 long non-coding(lnc) isoforms of known genes 2601 46.48212 4
Osa05LNT0296500.1 5 Osa05LNG0296500 4887344-4890234 long non-coding(lnc) isoforms of known genes 1030 44.36893 5
Osa05LNT0512700.1 5 Osa05LNG0512700 4987195-4987395 intergenetic lncRNA (lincRNA) 201 27.36318 1
Osa05LNT0296600.1 5 Osa05LNG0296600 4998309-4999626 long non-coding(lnc) isoforms of known genes 799 55.06884 3
Osa05LNT0296700.2 5 Osa05LNG0296700 5254254-5262132 long non-coding(lnc) isoforms of known genes 1869 45.96041 10
Osa05LNT0296700.1 5 Osa05LNG0296700 5254254-5262132 long non-coding(lnc) isoforms of known genes 1841 46.0076 10
Osa05LNT0296800.1 5 Osa05LNG0296800 5266519-5277751 long non-coding(lnc) isoforms of known genes 778 56.2982 4
Osa05LNT0296900.1 5 Osa05LNG0296900 5284540-5287858 intergenetic lncRNA (lincRNA) 968 45.45455 3
Osa05LNT0297000.1 5 Osa05LNG0297000 5455649-5458451 intergenetic lncRNA (lincRNA) 674 56.97329 3
Osa05LNT0512900.1 5 Osa05LNG0512900 5691426-5691699 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa05LNT0512800.1 5 Osa05LNG0512800 5691426-5691699 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa05LNT0297100.1 5 Osa05LNG0297100 5756474-5760791 long non-coding(lnc) isoforms of known genes 1500 50.0 11
Osa05LNT0297200.1 5 Osa05LNG0297200 5818039-5821462 intergenetic lncRNA (lincRNA) 714 50.70028 3
Osa05LNT0513100.1 5 Osa05LNG0513100 5933534-5933778 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa05LNT0513000.1 5 Osa05LNG0513000 5933534-5933778 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa05LNT0513200.1 5 Osa05LNG0513200 5989240-5989482 intergenetic lncRNA (lincRNA) 243 23.04527 1
Osa05LNT0513300.1 5 Osa05LNG0513300 5989240-5989483 intergenetic lncRNA (lincRNA) 244 22.95082 1
Osa05LNT0513400.1 5 Osa05LNG0513400 5989550-5989822 intergenetic lncRNA (lincRNA) 273 25.27473 1
Osa05LNT0513500.1 5 Osa05LNG0513500 5989550-5989822 intergenetic lncRNA (lincRNA) 273 25.27473 1
Osa05LNT0513600.1 5 Osa05LNG0513600 6106827-6107034 intergenetic lncRNA (lincRNA) 208 40.86538 1
Osa05LNT0297300.3 5 Osa05LNG0297300 6198344-6200904 intergenetic lncRNA (lincRNA) 1518 47.62846 4
Osa05LNT0297300.1 5 Osa05LNG0297300 6198344-6200904 intergenetic lncRNA (lincRNA) 2130 43.38028 2
Osa05LNT0297300.4 5 Osa05LNG0297300 6198344-6200904 intergenetic lncRNA (lincRNA) 944 52.22458 3