\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

filter

Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa05LNT0297300.2 5 Osa05LNG0297300 6198344-6200904 intergenetic lncRNA (lincRNA) 1418 47.60226 3
Osa05LNT0513800.1 5 Osa05LNG0513800 6302747-6303021 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0513700.1 5 Osa05LNG0513700 6302747-6303021 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0513900.1 5 Osa05LNG0513900 6303236-6303462 intergenetic lncRNA (lincRNA) 227 38.76652 1
Osa05LNT0297400.2 5 Osa05LNG0297400 6358109-6363348 long non-coding(lnc) isoforms of known genes 2778 40.96472 18
Osa05LNT0297400.3 5 Osa05LNG0297400 6358109-6363348 long non-coding(lnc) isoforms of known genes 2635 41.17647 17
Osa05LNT0297400.1 5 Osa05LNG0297400 6358109-6363348 long non-coding(lnc) isoforms of known genes 2872 40.8078 18
Osa05LNT0297500.1 5 Osa05LNG0297500 6425734-6434639 intergenetic lncRNA (lincRNA) 956 45.60669 8
Osa05LNT0297600.1 5 Osa05LNG0297600 6468141-6470940 long non-coding(lnc) isoforms of known genes 2727 40.59406 2
Osa05LNT0514000.1 5 Osa05LNG0514000 6597965-6598238 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa05LNT0514100.1 5 Osa05LNG0514100 6597965-6598238 intergenetic lncRNA (lincRNA) 274 25.54745 1
Osa05LNT0297700.1 5 Osa05LNG0297700 6666888-6671865 long non-coding(lnc) isoforms of known genes 1717 53.17414 6
Osa05LNT0511800.1 5 Osa05LNG0511800 682655-682868 intergenetic lncRNA (lincRNA) 214 58.41121 1
Osa05LNT0297800.1 5 Osa05LNG0297800 6843396-6851431 long non-coding(lnc) isoforms of known genes 3522 41.39693 18
Osa05LNT0514300.1 5 Osa05LNG0514300 6872744-6873015 intergenetic lncRNA (lincRNA) 272 26.10294 1
Osa05LNT0514200.1 5 Osa05LNG0514200 6872744-6873015 intergenetic lncRNA (lincRNA) 272 26.10294 1
Osa05LNT0291000.1 5 Osa05LNG0291000 687860-690346 long non-coding(lnc) isoforms of known genes 1161 50.1292 2
Osa05LNT0297900.1 5 Osa05LNG0297900 6936886-6939626 long non-coding(lnc) isoforms of known genes 2154 44.47539 6
Osa05LNT0298000.3 5 Osa05LNG0298000 6957483-6964188 long non-coding(lnc) isoforms of known genes 1982 44.65187 10
Osa05LNT0298000.2 5 Osa05LNG0298000 6957483-6964188 long non-coding(lnc) isoforms of known genes 2407 42.75031 9
Osa05LNT0298000.1 5 Osa05LNG0298000 6957483-6964188 long non-coding(lnc) isoforms of known genes 1500 45.13333 9
Osa05LNT0298100.2 5 Osa05LNG0298100 7062008-7066128 long non-coding(lnc) isoforms of known genes 2716 47.42268 7
Osa05LNT0298100.1 5 Osa05LNG0298100 7062008-7066128 long non-coding(lnc) isoforms of known genes 2230 48.38565 5
Osa05LNT0298200.1 5 Osa05LNG0298200 7231490-7231948 intergenetic lncRNA (lincRNA) 291 65.2921 2
Osa05LNT0298300.1 5 Osa05LNG0298300 7395147-7395437 intergenetic lncRNA (lincRNA) 291 62.8866 1
Osa05LNT0298400.1 5 Osa05LNG0298400 7398553-7403297 long non-coding(lnc) isoforms of known genes 1837 50.73489 5
Osa05LNT0298500.1 5 Osa05LNG0298500 7455582-7460900 long non-coding(lnc) isoforms of known genes 1198 47.41235 7
Osa05LNT0514500.1 5 Osa05LNG0514500 7502470-7502744 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa05LNT0514400.1 5 Osa05LNG0514400 7502470-7502744 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa05LNT0298600.1 5 Osa05LNG0298600 7634230-7648189 long non-coding(lnc) isoforms of known genes 4485 47.7592 21
Osa05LNT0298600.2 5 Osa05LNG0298600 7634230-7648189 long non-coding(lnc) isoforms of known genes 4665 47.60986 22
Osa05LNT0298700.1 5 Osa05LNG0298700 7685180-7692544 Antisense lncRNA 455 35.16484 2
Osa05LNT0298800.1 5 Osa05LNG0298800 7685330-7693417 sense lncRNA 1174 50.85179 2
Osa05LNT0298900.1 5 Osa05LNG0298900 7722255-7747982 sense lncRNA 510 55.88235 4
Osa05LNT0298900.2 5 Osa05LNG0298900 7722255-7747982 sense lncRNA 384 55.20833 3
Osa05LNT0299000.1 5 Osa05LNG0299000 7848169-7850668 long non-coding(lnc) isoforms of known genes 1822 46.65203 2
Osa05LNT0514600.1 5 Osa05LNG0514600 7851108-7851382 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0514700.1 5 Osa05LNG0514700 7851108-7851382 intergenetic lncRNA (lincRNA) 275 25.81818 1
Osa05LNT0291200.1 5 Osa05LNG0291200 788600-791379 long non-coding(lnc) isoforms of known genes 1574 44.85388 4
Osa05LNT0514800.1 5 Osa05LNG0514800 7920975-7921217 intergenetic lncRNA (lincRNA) 243 27.57202 1
Osa05LNT0514900.1 5 Osa05LNG0514900 7921284-7921558 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa05LNT0515000.1 5 Osa05LNG0515000 7921284-7921558 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa05LNT0291100.1 5 Osa05LNG0291100 809696-811312 intergenetic lncRNA (lincRNA) 1509 37.9059 2
Osa05LNT0299100.1 5 Osa05LNG0299100 8107373-8108277 intergenetic lncRNA (lincRNA) 818 40.5868 2
Osa05LNT0291300.1 5 Osa05LNG0291300 839423-841577 intergenetic lncRNA (lincRNA) 734 48.50136 2
Osa05LNT0299200.1 5 Osa05LNG0299200 8441449-8442927 intronic lncRNA 1479 40.2975 1
Osa05LNT0299400.2 5 Osa05LNG0299400 8526487-8535118 long non-coding(lnc) isoforms of known genes 5552 45.76729 9
Osa05LNT0299400.1 5 Osa05LNG0299400 8526487-8535118 long non-coding(lnc) isoforms of known genes 4855 46.48816 10
Osa05LNT0299300.1 5 Osa05LNG0299300 8578962-8580142 intergenetic lncRNA (lincRNA) 771 56.03113 2
Osa05LNT0299500.1 5 Osa05LNG0299500 8616503-8618486 long non-coding(lnc) isoforms of known genes 746 49.7319 5
Osa05LNT0299600.1 5 Osa05LNG0299600 8689448-8691503 long non-coding(lnc) isoforms of known genes 1600 45.625 5
Osa05LNT0299600.2 5 Osa05LNG0299600 8689448-8691503 long non-coding(lnc) isoforms of known genes 1404 46.72365 5
Osa05LNT0299600.3 5 Osa05LNG0299600 8689448-8691503 long non-coding(lnc) isoforms of known genes 1478 45.8728 4
Osa05LNT0299800.1 5 Osa05LNG0299800 8691778-8696463 long non-coding(lnc) isoforms of known genes 1370 51.53285 5
Osa05LNT0299800.2 5 Osa05LNG0299800 8691778-8696463 long non-coding(lnc) isoforms of known genes 1278 50.07825 5
Osa05LNT0299700.1 5 Osa05LNG0299700 8704396-8705005 intergenetic lncRNA (lincRNA) 610 60.4918 1
Osa05LNT0299900.1 5 Osa05LNG0299900 8766745-8774381 long non-coding(lnc) isoforms of known genes 2097 53.36195 8
Osa05LNT0300000.1 5 Osa05LNG0300000 8966227-8973304 long non-coding(lnc) isoforms of known genes 3111 44.58374 7
Osa05LNT0300100.1 5 Osa05LNG0300100 9294745-9295558 intergenetic lncRNA (lincRNA) 646 38.39009 2
Osa05LNT0515200.1 5 Osa05LNG0515200 9332063-9332335 intergenetic lncRNA (lincRNA) 273 28.57143 1
Osa05LNT0515100.1 5 Osa05LNG0515100 9332063-9332335 intergenetic lncRNA (lincRNA) 273 28.57143 1
Osa05LNT0515400.1 5 Osa05LNG0515400 9332402-9332650 intergenetic lncRNA (lincRNA) 249 24.49799 1
Osa05LNT0515300.1 5 Osa05LNG0515300 9332402-9332650 intergenetic lncRNA (lincRNA) 249 24.49799 1
Osa05LNT0515500.1 5 Osa05LNG0515500 9332723-9332994 intergenetic lncRNA (lincRNA) 272 26.47059 1
Osa05LNT0515600.1 5 Osa05LNG0515600 9332723-9332994 intergenetic lncRNA (lincRNA) 272 26.47059 1
Osa05LNT0515700.1 5 Osa05LNG0515700 9431909-9432167 intergenetic lncRNA (lincRNA) 259 49.80695 1
Osa05LNT0300200.1 5 Osa05LNG0300200 9533141-9534106 intergenetic lncRNA (lincRNA) 966 54.24431 1
Osa05LNT0291400.1 5 Osa05LNG0291400 993324-994268 sense lncRNA 786 54.83461 2
Osa06LNT0500400.1 6 Osa06LNG0500400 10269915-10270120 intergenetic lncRNA (lincRNA) 206 22.81553 1
Osa06LNT0500500.1 6 Osa06LNG0500500 10429751-10430023 intergenetic lncRNA (lincRNA) 273 27.47253 1
Osa06LNT0500600.1 6 Osa06LNG0500600 10429751-10430023 intergenetic lncRNA (lincRNA) 273 27.47253 1
Osa06LNT0325100.1 6 Osa06LNG0325100 1054296-1055141 intergenetic lncRNA (lincRNA) 846 48.93617 1
Osa06LNT0339000.1 6 Osa06LNG0339000 10637740-10638282 intergenetic lncRNA (lincRNA) 543 51.01289 1
Osa06LNT0500700.1 6 Osa06LNG0500700 10659381-10659585 intergenetic lncRNA (lincRNA) 205 39.5122 1
Osa06LNT0339100.1 6 Osa06LNG0339100 10690711-10693716 long non-coding(lnc) isoforms of known genes 2363 46.59331 3
Osa06LNT0339200.2 6 Osa06LNG0339200 10738687-10745051 sense lncRNA 5099 44.77348 4
Osa06LNT0339200.1 6 Osa06LNG0339200 10738687-10745051 sense lncRNA 5180 44.71042 3
Osa06LNT0500800.1 6 Osa06LNG0500800 10780009-10780280 intergenetic lncRNA (lincRNA) 272 27.57353 1
Osa06LNT0339300.1 6 Osa06LNG0339300 10853237-10853467 intergenetic lncRNA (lincRNA) 231 41.55844 1
Osa06LNT0339400.1 6 Osa06LNG0339400 10956726-10960625 sense lncRNA 627 60.44657 3
Osa06LNT0500900.1 6 Osa06LNG0500900 10977901-10978105 intergenetic lncRNA (lincRNA) 205 40.97561 1
Osa06LNT0339500.1 6 Osa06LNG0339500 11030403-11034085 long non-coding(lnc) isoforms of known genes 2057 42.63491 6
Osa06LNT0339600.1 6 Osa06LNG0339600 11055861-11065433 long non-coding(lnc) isoforms of known genes 3859 41.66883 6
Osa06LNT0339700.1 6 Osa06LNG0339700 11149769-11150288 intergenetic lncRNA (lincRNA) 520 61.34615 1
Osa06LNT0501000.1 6 Osa06LNG0501000 11228630-11228831 intergenetic lncRNA (lincRNA) 202 29.20792 1
Osa06LNT0339800.1 6 Osa06LNG0339800 11448759-11450848 sense lncRNA 1263 53.28583 4
Osa06LNT0496200.1 6 Osa06LNG0496200 1156370-1156586 intergenetic lncRNA (lincRNA) 217 39.63134 1
Osa06LNT0496300.1 6 Osa06LNG0496300 1157136-1157354 intergenetic lncRNA (lincRNA) 219 30.59361 1
Osa06LNT0496400.1 6 Osa06LNG0496400 1157136-1157354 intergenetic lncRNA (lincRNA) 219 30.59361 1
Osa06LNT0339900.1 6 Osa06LNG0339900 11603933-11605727 intergenetic lncRNA (lincRNA) 513 47.75828 3
Osa06LNT0340000.1 6 Osa06LNG0340000 11670344-11673364 long non-coding(lnc) isoforms of known genes 2158 53.15107 5
Osa06LNT0340100.1 6 Osa06LNG0340100 11684230-11687910 long non-coding(lnc) isoforms of known genes 1245 47.71084 6
Osa06LNT0340100.2 6 Osa06LNG0340100 11684230-11687910 long non-coding(lnc) isoforms of known genes 1251 47.72182 6
Osa06LNT0340200.1 6 Osa06LNG0340200 11719034-11722831 long non-coding(lnc) isoforms of known genes 1955 42.35294 5
Osa06LNT0340400.1 6 Osa06LNG0340400 11737149-11741013 long non-coding(lnc) isoforms of known genes 1715 49.15452 6
Osa06LNT0340400.2 6 Osa06LNG0340400 11737149-11741013 long non-coding(lnc) isoforms of known genes 2925 44.06838 3
Osa06LNT0340300.1 6 Osa06LNG0340300 11773570-11778188 intergenetic lncRNA (lincRNA) 521 40.88292 2
Osa06LNT0340600.1 6 Osa06LNG0340600 11781838-11789081 long non-coding(lnc) isoforms of known genes 3185 51.58556 21
Osa06LNT0340500.1 6 Osa06LNG0340500 11967291-11968747 intergenetic lncRNA (lincRNA) 1457 54.63281 1
Osa06LNT0340700.1 6 Osa06LNG0340700 11985620-11989718 long non-coding(lnc) isoforms of known genes 1914 42.16301 3