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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa01LNT0038100.1 1 Osa01LNG0038100 31677381-31689878 long non-coding(lnc) isoforms of known genes 2874 43.45859 18
Osa01LNT0038200.1 1 Osa01LNG0038200 31717124-31719673 long non-coding(lnc) isoforms of known genes 1979 51.238 3
Osa01LNT0038300.1 1 Osa01LNG0038300 31737980-31742787 long non-coding(lnc) isoforms of known genes 1550 50.3871 11
Osa01LNT0038400.1 1 Osa01LNG0038400 31787577-31788085 intergenetic lncRNA (lincRNA) 509 49.50884 1
Osa01LNT0038500.2 1 Osa01LNG0038500 31826639-31830179 long non-coding(lnc) isoforms of known genes 1297 43.56207 6
Osa01LNT0038500.1 1 Osa01LNG0038500 31826639-31830179 long non-coding(lnc) isoforms of known genes 1292 43.49845 6
Osa01LNT0038600.2 1 Osa01LNG0038600 31836076-31839761 long non-coding(lnc) isoforms of known genes 2180 44.0367 9
Osa01LNT0038600.1 1 Osa01LNG0038600 31836076-31839761 long non-coding(lnc) isoforms of known genes 1728 47.39583 9
Osa01LNT0038700.1 1 Osa01LNG0038700 31863777-31865553 long non-coding(lnc) isoforms of known genes 601 52.74542 3
Osa01LNT0003900.2 1 Osa01LNG0003900 3189117-3191262 sense lncRNA 1254 59.72887 3
Osa01LNT0003900.1 1 Osa01LNG0003900 3189117-3191262 sense lncRNA 1475 56.81356 2
Osa01LNT0038800.1 1 Osa01LNG0038800 31998927-32000458 long non-coding(lnc) isoforms of known genes 1342 37.77943 2
Osa01LNT0038900.1 1 Osa01LNG0038900 32106729-32109857 long non-coding(lnc) isoforms of known genes 1868 57.54818 2
Osa01LNT0039000.2 1 Osa01LNG0039000 32177351-32181676 long non-coding(lnc) isoforms of known genes 2980 45.36913 9
Osa01LNT0039000.1 1 Osa01LNG0039000 32177351-32181676 long non-coding(lnc) isoforms of known genes 2426 47.85655 10
Osa01LNT0039100.1 1 Osa01LNG0039100 32184289-32189752 long non-coding(lnc) isoforms of known genes 1403 49.67926 13
Osa01LNT0039200.2 1 Osa01LNG0039200 32226157-32232595 long non-coding(lnc) isoforms of known genes 3121 51.52195 8
Osa01LNT0039200.1 1 Osa01LNG0039200 32226157-32232595 long non-coding(lnc) isoforms of known genes 3395 49.98527 8
Osa01LNT0039300.1 1 Osa01LNG0039300 32318616-32322018 sense lncRNA 1808 45.4646 5
Osa01LNT0039400.1 1 Osa01LNG0039400 32327830-32333037 long non-coding(lnc) isoforms of known genes 3578 44.63387 8
Osa01LNT0039500.1 1 Osa01LNG0039500 32381348-32385673 long non-coding(lnc) isoforms of known genes 1333 47.11178 9
Osa01LNT0039600.1 1 Osa01LNG0039600 32396592-32399072 intergenetic lncRNA (lincRNA) 1228 40.30945 10
Osa01LNT0039700.1 1 Osa01LNG0039700 32399198-32400432 intergenetic lncRNA (lincRNA) 892 39.57399 3
Osa01LNT0039800.1 1 Osa01LNG0039800 32484548-32486867 long non-coding(lnc) isoforms of known genes 1256 38.93312 4
Osa01LNT0039900.1 1 Osa01LNG0039900 32580714-32586155 long non-coding(lnc) isoforms of known genes 2592 45.33179 11
Osa01LNT0040000.1 1 Osa01LNG0040000 32586928-32591875 long non-coding(lnc) isoforms of known genes 1722 50.29036 6
Osa01LNT0040100.2 1 Osa01LNG0040100 32598097-32601804 long non-coding(lnc) isoforms of known genes 1271 48.22974 6
Osa01LNT0040100.1 1 Osa01LNG0040100 32598097-32601804 long non-coding(lnc) isoforms of known genes 1373 47.05025 5
Osa01LNT0040200.1 1 Osa01LNG0040200 32660519-32667347 long non-coding(lnc) isoforms of known genes 3160 47.1519 17
Osa01LNT0040300.3 1 Osa01LNG0040300 32676081-32681406 long non-coding(lnc) isoforms of known genes 2606 45.01151 13
Osa01LNT0040300.1 1 Osa01LNG0040300 32676081-32681406 long non-coding(lnc) isoforms of known genes 2636 44.15781 14
Osa01LNT0040300.2 1 Osa01LNG0040300 32676081-32681406 long non-coding(lnc) isoforms of known genes 2305 46.68113 14
Osa01LNT0040400.1 1 Osa01LNG0040400 32751201-32751410 intronic lncRNA 210 50.47619 1
Osa01LNT0040500.1 1 Osa01LNG0040500 32759126-32764797 long non-coding(lnc) isoforms of known genes 3549 44.23781 7
Osa01LNT0040700.1 1 Osa01LNG0040700 32773442-32783794 long non-coding(lnc) isoforms of known genes 4416 45.24457 14
Osa01LNT0040600.2 1 Osa01LNG0040600 32788491-32791466 long non-coding(lnc) isoforms of known genes 2400 57.41667 3
Osa01LNT0040600.1 1 Osa01LNG0040600 32788491-32791466 long non-coding(lnc) isoforms of known genes 1942 59.93821 3
Osa01LNT0040800.1 1 Osa01LNG0040800 32810952-32819425 long non-coding(lnc) isoforms of known genes 3743 48.16992 14
Osa01LNT0040900.1 1 Osa01LNG0040900 32855435-32858093 long non-coding(lnc) isoforms of known genes 878 60.25057 4
Osa01LNT0041200.1 1 Osa01LNG0041200 32900885-32907645 sense lncRNA 409 74.32763 2
Osa01LNT0041300.3 1 Osa01LNG0041300 32903045-32925673 long non-coding(lnc) isoforms of known genes 4633 41.31232 31
Osa01LNT0041300.2 1 Osa01LNG0041300 32903045-32925673 long non-coding(lnc) isoforms of known genes 4902 40.45288 30
Osa01LNT0041300.1 1 Osa01LNG0041300 32903045-32925673 long non-coding(lnc) isoforms of known genes 3819 42.47185 32
Osa01LNT0041000.1 1 Osa01LNG0041000 32929073-32932791 long non-coding(lnc) isoforms of known genes 1348 47.84866 8
Osa01LNT0041100.1 1 Osa01LNG0041100 32956325-32956524 intergenetic lncRNA (lincRNA) 200 47.0 1
Osa01LNT0041400.1 1 Osa01LNG0041400 33000078-33010217 long non-coding(lnc) isoforms of known genes 5110 42.83757 12
Osa01LNT0041700.1 1 Osa01LNG0041700 33145928-33152519 long non-coding(lnc) isoforms of known genes 2619 47.42268 9
Osa01LNT0041800.1 1 Osa01LNG0041800 33147601-33153350 sense lncRNA 470 55.10638 2
Osa01LNT0041500.1 1 Osa01LNG0041500 33154311-33158317 long non-coding(lnc) isoforms of known genes 863 45.88644 3
Osa01LNT0041600.1 1 Osa01LNG0041600 33195216-33196426 intergenetic lncRNA (lincRNA) 891 43.32211 2
Osa01LNT0041900.1 1 Osa01LNG0041900 33249300-33250376 long non-coding(lnc) isoforms of known genes 763 38.92529 3
Osa01LNT0004000.2 1 Osa01LNG0004000 3332952-3336035 long non-coding(lnc) isoforms of known genes 1381 46.63287 12
Osa01LNT0004000.1 1 Osa01LNG0004000 3332952-3336035 long non-coding(lnc) isoforms of known genes 1724 44.54756 11
Osa01LNT0461200.1 1 Osa01LNG0461200 33341332-33341584 intergenetic lncRNA (lincRNA) 253 43.083 1
Osa01LNT0042000.1 1 Osa01LNG0042000 33484564-33487837 long non-coding(lnc) isoforms of known genes 1865 44.7185 3
Osa01LNT0042100.1 1 Osa01LNG0042100 33502745-33504236 intergenetic lncRNA (lincRNA) 1492 35.85791 1
Osa01LNT0461300.1 1 Osa01LNG0461300 33562268-33562793 intergenetic lncRNA (lincRNA) 526 35.55133 1
Osa01LNT0042200.1 1 Osa01LNG0042200 33609436-33616252 long non-coding(lnc) isoforms of known genes 1869 47.99358 7
Osa01LNT0042300.1 1 Osa01LNG0042300 33703331-33704885 intergenetic lncRNA (lincRNA) 1555 53.37621 1
Osa01LNT0042400.1 1 Osa01LNG0042400 33705395-33706199 intergenetic lncRNA (lincRNA) 805 57.63975 1
Osa01LNT0042500.1 1 Osa01LNG0042500 33733124-33735425 long non-coding(lnc) isoforms of known genes 1037 49.66249 5
Osa01LNT0042600.1 1 Osa01LNG0042600 33816601-33821270 long non-coding(lnc) isoforms of known genes 3353 43.39398 2
Osa01LNT0004100.1 1 Osa01LNG0004100 3386766-3390803 long non-coding(lnc) isoforms of known genes 2577 47.30307 9
Osa01LNT0042700.1 1 Osa01LNG0042700 33952187-33956006 long non-coding(lnc) isoforms of known genes 2065 53.7046 5
Osa01LNT0461400.1 1 Osa01LNG0461400 34106523-34106817 intergenetic lncRNA (lincRNA) 295 43.38983 1
Osa01LNT0042800.1 1 Osa01LNG0042800 34153520-34159963 long non-coding(lnc) isoforms of known genes 2808 45.65527 12
Osa01LNT0043000.1 1 Osa01LNG0043000 34176198-34179807 long non-coding(lnc) isoforms of known genes 983 49.44049 8
Osa01LNT0042900.1 1 Osa01LNG0042900 34256800-34258347 intergenetic lncRNA (lincRNA) 1548 43.08786 1
Osa01LNT0043100.1 1 Osa01LNG0043100 34295651-34299876 long non-coding(lnc) isoforms of known genes 763 51.90039 2
Osa01LNT0043200.1 1 Osa01LNG0043200 34295788-34297945 Antisense lncRNA 1674 44.26523 2
Osa01LNT0043300.1 1 Osa01LNG0043300 34306542-34313315 long non-coding(lnc) isoforms of known genes 2154 47.91086 11
Osa01LNT0461500.1 1 Osa01LNG0461500 34361360-34361616 intergenetic lncRNA (lincRNA) 257 28.79377 1
Osa01LNT0043400.1 1 Osa01LNG0043400 34427866-34432457 Antisense lncRNA 455 56.26374 3
Osa01LNT0043500.1 1 Osa01LNG0043500 34458172-34463288 long non-coding(lnc) isoforms of known genes 367 55.58583 3
Osa01LNT0043600.1 1 Osa01LNG0043600 34485352-34489812 long non-coding(lnc) isoforms of known genes 1736 52.13134 9
Osa01LNT0043700.2 1 Osa01LNG0043700 34560584-34564323 sense lncRNA 853 49.12075 5
Osa01LNT0043700.1 1 Osa01LNG0043700 34560584-34564323 sense lncRNA 1972 42.64706 4
Osa01LNT0043800.1 1 Osa01LNG0043800 34565278-34568305 long non-coding(lnc) isoforms of known genes 1471 52.41332 3
Osa01LNT0004200.1 1 Osa01LNG0004200 3456801-3464081 long non-coding(lnc) isoforms of known genes 2980 40.67114 17
Osa01LNT0043900.1 1 Osa01LNG0043900 34583893-34587110 long non-coding(lnc) isoforms of known genes 2276 51.49385 7
Osa01LNT0043900.2 1 Osa01LNG0043900 34583893-34587110 long non-coding(lnc) isoforms of known genes 2339 50.9192 6
Osa01LNT0044000.1 1 Osa01LNG0044000 34629205-34635185 long non-coding(lnc) isoforms of known genes 2781 43.29378 12
Osa01LNT0044100.1 1 Osa01LNG0044100 34643311-34646270 long non-coding(lnc) isoforms of known genes 1349 53.81764 5
Osa01LNT0044200.1 1 Osa01LNG0044200 34647146-34650723 long non-coding(lnc) isoforms of known genes 1605 48.47352 10
Osa01LNT0044300.1 1 Osa01LNG0044300 34685668-34689816 sense lncRNA 2157 41.72462 2
Osa01LNT0044400.1 1 Osa01LNG0044400 34692912-34694382 long non-coding(lnc) isoforms of known genes 1371 59.81036 2
Osa01LNT0044500.1 1 Osa01LNG0044500 34737293-34738568 Antisense lncRNA 1033 42.11036 3
Osa01LNT0044600.1 1 Osa01LNG0044600 34738831-34746460 Antisense lncRNA 275 58.18182 3
Osa01LNT0461600.1 1 Osa01LNG0461600 34761140-34761343 intergenetic lncRNA (lincRNA) 204 27.94118 1
Osa01LNT0044700.1 1 Osa01LNG0044700 34949168-34959311 long non-coding(lnc) isoforms of known genes 3108 46.33205 20
Osa01LNT0004300.1 1 Osa01LNG0004300 3516766-3519077 long non-coding(lnc) isoforms of known genes 2114 51.13529 3
Osa01LNT0044800.1 1 Osa01LNG0044800 35518523-35523595 intergenetic lncRNA (lincRNA) 1131 45.00442 9
Osa01LNT0044900.1 1 Osa01LNG0044900 35601142-35603964 long non-coding(lnc) isoforms of known genes 1233 48.82401 5
Osa01LNT0044900.2 1 Osa01LNG0044900 35601142-35603964 long non-coding(lnc) isoforms of known genes 1061 51.46089 6
Osa01LNT0045000.1 1 Osa01LNG0045000 35700437-35707863 long non-coding(lnc) isoforms of known genes 1939 43.21815 12
Osa01LNT0045100.3 1 Osa01LNG0045100 35709533-35713312 long non-coding(lnc) isoforms of known genes 2250 50.62222 6
Osa01LNT0045100.1 1 Osa01LNG0045100 35709533-35713312 long non-coding(lnc) isoforms of known genes 1994 49.24774 6
Osa01LNT0045100.2 1 Osa01LNG0045100 35709533-35713312 long non-coding(lnc) isoforms of known genes 2223 50.60729 6
Osa01LNT0045100.4 1 Osa01LNG0045100 35709533-35713312 long non-coding(lnc) isoforms of known genes 2146 49.67381 6
Osa01LNT0045200.1 1 Osa01LNG0045200 35745526-35749594 long non-coding(lnc) isoforms of known genes 3853 38.46353 3