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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0340800.1 6 Osa06LNG0340800 12014622-12015701 intergenetic lncRNA (lincRNA) 560 40.71429 2
Osa06LNT0501200.1 6 Osa06LNG0501200 12152596-12152869 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa06LNT0501100.1 6 Osa06LNG0501100 12152596-12152869 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa06LNT0501300.1 6 Osa06LNG0501300 12293955-12294179 intergenetic lncRNA (lincRNA) 225 44.88889 1
Osa06LNT0501400.1 6 Osa06LNG0501400 12306509-12306782 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa06LNT0501500.1 6 Osa06LNG0501500 12306509-12306782 intergenetic lncRNA (lincRNA) 274 31.0219 1
Osa06LNT0340900.1 6 Osa06LNG0340900 12339203-12339903 sense lncRNA 624 51.44231 2
Osa06LNT0501700.1 6 Osa06LNG0501700 12369133-12369407 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0501600.1 6 Osa06LNG0501600 12369133-12369407 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0501800.1 6 Osa06LNG0501800 12549163-12549368 intergenetic lncRNA (lincRNA) 206 48.54369 1
Osa06LNT0341000.1 6 Osa06LNG0341000 12619742-12620702 intergenetic lncRNA (lincRNA) 802 51.24688 3
Osa06LNT0502000.1 6 Osa06LNG0502000 12643532-12643804 intergenetic lncRNA (lincRNA) 273 25.27473 1
Osa06LNT0501900.1 6 Osa06LNG0501900 12643532-12643804 intergenetic lncRNA (lincRNA) 273 25.27473 1
Osa06LNT0341100.1 6 Osa06LNG0341100 12763911-12764242 intergenetic lncRNA (lincRNA) 332 38.85542 1
Osa06LNT0502200.1 6 Osa06LNG0502200 12878340-12878613 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa06LNT0502100.1 6 Osa06LNG0502100 12878340-12878613 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa06LNT0341200.1 6 Osa06LNG0341200 12999324-13000888 long non-coding(lnc) isoforms of known genes 847 51.35773 4
Osa06LNT0341300.1 6 Osa06LNG0341300 13007784-13010587 sense lncRNA 1219 51.59967 2
Osa06LNT0502300.1 6 Osa06LNG0502300 13068667-13068939 intergenetic lncRNA (lincRNA) 273 27.10623 1
Osa06LNT0341400.1 6 Osa06LNG0341400 13101545-13112790 long non-coding(lnc) isoforms of known genes 3040 41.51316 10
Osa06LNT0341400.2 6 Osa06LNG0341400 13101545-13112790 long non-coding(lnc) isoforms of known genes 3045 41.54351 10
Osa06LNT0341500.1 6 Osa06LNG0341500 13182277-13189310 long non-coding(lnc) isoforms of known genes 2139 46.84432 8
Osa06LNT0341600.2 6 Osa06LNG0341600 13201039-13205821 long non-coding(lnc) isoforms of known genes 3272 49.17482 4
Osa06LNT0341600.1 6 Osa06LNG0341600 13201039-13205821 long non-coding(lnc) isoforms of known genes 3147 49.53924 4
Osa06LNT0341600.3 6 Osa06LNG0341600 13201039-13205821 long non-coding(lnc) isoforms of known genes 1645 58.78419 3
Osa06LNT0502500.1 6 Osa06LNG0502500 13370957-13371225 intergenetic lncRNA (lincRNA) 269 29.73978 1
Osa06LNT0502400.1 6 Osa06LNG0502400 13370957-13371225 intergenetic lncRNA (lincRNA) 269 29.73978 1
Osa06LNT0341700.1 6 Osa06LNG0341700 13375606-13385094 intergenetic lncRNA (lincRNA) 920 45.1087 2
Osa06LNT0502700.1 6 Osa06LNG0502700 13470797-13471029 intergenetic lncRNA (lincRNA) 233 24.8927 1
Osa06LNT0502600.1 6 Osa06LNG0502600 13470797-13471029 intergenetic lncRNA (lincRNA) 233 24.8927 1
Osa06LNT0502900.1 6 Osa06LNG0502900 13471099-13471373 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0502800.1 6 Osa06LNG0502800 13471099-13471373 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0325200.1 6 Osa06LNG0325200 1349802-1358953 long non-coding(lnc) isoforms of known genes 550 46.36364 3
Osa06LNT0341800.1 6 Osa06LNG0341800 13514718-13521719 long non-coding(lnc) isoforms of known genes 1882 46.59936 12
Osa06LNT0341900.1 6 Osa06LNG0341900 13602068-13604906 long non-coding(lnc) isoforms of known genes 2547 48.9203 4
Osa06LNT0503000.1 6 Osa06LNG0503000 13606856-13607110 intergenetic lncRNA (lincRNA) 255 27.84314 1
Osa06LNT0503200.1 6 Osa06LNG0503200 13646397-13646641 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa06LNT0503100.1 6 Osa06LNG0503100 13646397-13646641 intergenetic lncRNA (lincRNA) 245 26.12245 1
Osa06LNT0342000.1 6 Osa06LNG0342000 13677508-13681870 long non-coding(lnc) isoforms of known genes 909 50.49505 4
Osa06LNT0325300.1 6 Osa06LNG0325300 1371096-1373671 Antisense lncRNA 881 52.09989 3
Osa06LNT0342200.2 6 Osa06LNG0342200 13723595-13730079 intergenetic lncRNA (lincRNA) 1104 47.64493 3
Osa06LNT0342200.1 6 Osa06LNG0342200 13723595-13730079 sense lncRNA 4198 52.23916 3
Osa06LNT0325400.1 6 Osa06LNG0325400 1373898-1374727 Antisense lncRNA 380 51.05263 4
Osa06LNT0342100.1 6 Osa06LNG0342100 13751154-13751858 intergenetic lncRNA (lincRNA) 432 42.59259 2
Osa06LNT0325500.1 6 Osa06LNG0325500 1385845-1388026 Antisense lncRNA 252 50.0 3
Osa06LNT0342300.1 6 Osa06LNG0342300 13886690-13888915 long non-coding(lnc) isoforms of known genes 658 40.88146 4
Osa06LNT0342400.2 6 Osa06LNG0342400 13888929-13889619 long non-coding(lnc) isoforms of known genes 498 73.69478 3
Osa06LNT0342400.1 6 Osa06LNG0342400 13888929-13889619 long non-coding(lnc) isoforms of known genes 621 75.52335 2
Osa06LNT0503400.1 6 Osa06LNG0503400 13890051-13890358 intergenetic lncRNA (lincRNA) 308 24.35065 1
Osa06LNT0503300.1 6 Osa06LNG0503300 13890051-13890358 intergenetic lncRNA (lincRNA) 308 24.35065 1
Osa06LNT0503600.1 6 Osa06LNG0503600 13891306-13891579 intergenetic lncRNA (lincRNA) 274 27.0073 1
Osa06LNT0503500.1 6 Osa06LNG0503500 13891306-13891579 intergenetic lncRNA (lincRNA) 274 27.0073 1
Osa06LNT0325700.1 6 Osa06LNG0325700 1389894-1392540 long non-coding(lnc) isoforms of known genes 1442 44.93759 5
Osa06LNT0342500.1 6 Osa06LNG0342500 13899249-13901956 long non-coding(lnc) isoforms of known genes 2351 44.19396 5
Osa06LNT0342600.1 6 Osa06LNG0342600 13905135-13907448 long non-coding(lnc) isoforms of known genes 1171 52.09223 6
Osa06LNT0325600.2 6 Osa06LNG0325600 1405305-1406281 long non-coding(lnc) isoforms of known genes 900 58.77778 3
Osa06LNT0325600.1 6 Osa06LNG0325600 1405305-1406281 long non-coding(lnc) isoforms of known genes 710 50.70423 3
Osa06LNT0503800.1 6 Osa06LNG0503800 14092610-14092884 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa06LNT0503700.1 6 Osa06LNG0503700 14092610-14092884 intergenetic lncRNA (lincRNA) 275 27.63636 1
Osa06LNT0503900.1 6 Osa06LNG0503900 14137879-14138079 intergenetic lncRNA (lincRNA) 201 27.8607 1
Osa06LNT0504000.1 6 Osa06LNG0504000 14188980-14189179 intergenetic lncRNA (lincRNA) 200 30.5 1
Osa06LNT0504200.1 6 Osa06LNG0504200 14300239-14300526 intergenetic lncRNA (lincRNA) 288 27.08333 1
Osa06LNT0504100.1 6 Osa06LNG0504100 14300239-14300526 intergenetic lncRNA (lincRNA) 288 27.08333 1
Osa06LNT0342700.1 6 Osa06LNG0342700 14341194-14343610 intergenetic lncRNA (lincRNA) 555 57.47748 3
Osa06LNT0325800.1 6 Osa06LNG0325800 1438387-1445164 long non-coding(lnc) isoforms of known genes 2486 44.69027 15
Osa06LNT0342800.4 6 Osa06LNG0342800 14418400-14428766 long non-coding(lnc) isoforms of known genes 4330 37.96767 5
Osa06LNT0342800.1 6 Osa06LNG0342800 14418400-14428766 long non-coding(lnc) isoforms of known genes 1433 47.80181 6
Osa06LNT0342800.3 6 Osa06LNG0342800 14418400-14428766 long non-coding(lnc) isoforms of known genes 3488 39.70757 6
Osa06LNT0342800.2 6 Osa06LNG0342800 14418400-14428766 long non-coding(lnc) isoforms of known genes 3499 39.55416 6
Osa06LNT0342900.1 6 Osa06LNG0342900 14504152-14510090 long non-coding(lnc) isoforms of known genes 1929 43.33852 13
Osa06LNT0343100.2 6 Osa06LNG0343100 14602718-14605945 long non-coding(lnc) isoforms of known genes 2925 39.21368 4
Osa06LNT0343100.1 6 Osa06LNG0343100 14602718-14605945 long non-coding(lnc) isoforms of known genes 2929 39.87709 3
Osa06LNT0343000.1 6 Osa06LNG0343000 14790217-14790891 intergenetic lncRNA (lincRNA) 675 53.92593 1
Osa06LNT0343200.1 6 Osa06LNG0343200 14889330-14889619 intronic lncRNA 290 22.06897 1
Osa06LNT0343300.1 6 Osa06LNG0343300 15055943-15057682 intergenetic lncRNA (lincRNA) 347 47.83862 3
Osa06LNT0323800.1 6 Osa06LNG0323800 153418-156578 long non-coding(lnc) isoforms of known genes 2146 50.55918 6
Osa06LNT0343400.1 6 Osa06LNG0343400 15414870-15423582 long non-coding(lnc) isoforms of known genes 2281 45.24331 10
Osa06LNT0343400.2 6 Osa06LNG0343400 15414870-15423582 long non-coding(lnc) isoforms of known genes 2125 45.41176 9
Osa06LNT0504300.1 6 Osa06LNG0504300 15625351-15625625 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0504400.1 6 Osa06LNG0504400 15625351-15625625 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0343500.1 6 Osa06LNG0343500 15696931-15698844 intergenetic lncRNA (lincRNA) 1347 51.8931 3
Osa06LNT0343600.1 6 Osa06LNG0343600 15761155-15765558 long non-coding(lnc) isoforms of known genes 2320 46.37931 4
Osa06LNT0343700.1 6 Osa06LNG0343700 15781397-15785896 long non-coding(lnc) isoforms of known genes 1475 48.88136 10
Osa06LNT0343800.2 6 Osa06LNG0343800 15811011-15821769 long non-coding(lnc) isoforms of known genes 2205 44.08163 10
Osa06LNT0343800.3 6 Osa06LNG0343800 15811011-15821769 long non-coding(lnc) isoforms of known genes 2188 44.14991 10
Osa06LNT0343800.1 6 Osa06LNG0343800 15811011-15821769 long non-coding(lnc) isoforms of known genes 2207 44.087 10
Osa06LNT0504500.1 6 Osa06LNG0504500 15831198-15831402 intergenetic lncRNA (lincRNA) 205 24.39024 1
Osa06LNT0344000.2 6 Osa06LNG0344000 15923035-15933069 long non-coding(lnc) isoforms of known genes 3136 46.81122 21
Osa06LNT0344000.3 6 Osa06LNG0344000 15923035-15933069 long non-coding(lnc) isoforms of known genes 3149 46.33217 21
Osa06LNT0344000.1 6 Osa06LNG0344000 15923035-15933069 long non-coding(lnc) isoforms of known genes 3368 45.87292 19
Osa06LNT0343900.1 6 Osa06LNG0343900 15983123-15985278 sense lncRNA 1199 52.54379 2
Osa06LNT0344100.1 6 Osa06LNG0344100 16100007-16102043 intergenetic lncRNA (lincRNA) 1056 47.15909 4
Osa06LNT0344100.2 6 Osa06LNG0344100 16100007-16102043 intergenetic lncRNA (lincRNA) 1419 35.79986 2
Osa06LNT0325900.1 6 Osa06LNG0325900 1613670-1620183 long non-coding(lnc) isoforms of known genes 1833 49.48172 15
Osa06LNT0504600.1 6 Osa06LNG0504600 16222205-16222478 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa06LNT0504700.1 6 Osa06LNG0504700 16222205-16222478 intergenetic lncRNA (lincRNA) 274 25.18248 1
Osa06LNT0504800.1 6 Osa06LNG0504800 16223304-16223545 intergenetic lncRNA (lincRNA) 242 28.09917 1
Osa06LNT0504900.1 6 Osa06LNG0504900 16223304-16223545 intergenetic lncRNA (lincRNA) 242 28.09917 1
Osa06LNT0344200.2 6 Osa06LNG0344200 16235180-16238085 intergenetic lncRNA (lincRNA) 2228 41.06822 2
Osa06LNT0344200.1 6 Osa06LNG0344200 16235180-16238085 intergenetic lncRNA (lincRNA) 2906 39.67653 1