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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0348700.1 6 Osa06LNG0348700 21343410-21350292 long non-coding(lnc) isoforms of known genes 3267 48.05632 12
Osa06LNT0508500.1 6 Osa06LNG0508500 21362055-21362327 intergenetic lncRNA (lincRNA) 273 27.47253 1
Osa06LNT0508600.1 6 Osa06LNG0508600 21362055-21362327 intergenetic lncRNA (lincRNA) 273 27.47253 1
Osa06LNT0348800.1 6 Osa06LNG0348800 21606849-21617120 long non-coding(lnc) isoforms of known genes 4729 45.46416 22
Osa06LNT0348800.2 6 Osa06LNG0348800 21606849-21617120 long non-coding(lnc) isoforms of known genes 3957 44.57923 20
Osa06LNT0326700.2 6 Osa06LNG0326700 2162738-2169698 long non-coding(lnc) isoforms of known genes 1323 54.34618 5
Osa06LNT0326700.1 6 Osa06LNG0326700 2162738-2169698 long non-coding(lnc) isoforms of known genes 1318 54.32473 5
Osa06LNT0348900.1 6 Osa06LNG0348900 21637467-21641982 long non-coding(lnc) isoforms of known genes 3648 42.87281 10
Osa06LNT0508700.1 6 Osa06LNG0508700 21646590-21646810 intergenetic lncRNA (lincRNA) 221 26.69683 1
Osa06LNT0349000.1 6 Osa06LNG0349000 21856766-21858211 intergenetic lncRNA (lincRNA) 1446 35.47718 1
Osa06LNT0349100.1 6 Osa06LNG0349100 21940214-21942985 intergenetic lncRNA (lincRNA) 1687 43.92413 2
Osa06LNT0349200.1 6 Osa06LNG0349200 21993390-21993693 intergenetic lncRNA (lincRNA) 304 45.06579 1
Osa06LNT0508800.1 6 Osa06LNG0508800 22019720-22019994 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0508900.1 6 Osa06LNG0508900 22020361-22020599 intergenetic lncRNA (lincRNA) 239 41.841 1
Osa06LNT0349300.1 6 Osa06LNG0349300 22020872-22024774 long non-coding(lnc) isoforms of known genes 2215 45.68849 5
Osa06LNT0349400.1 6 Osa06LNG0349400 22073976-22079683 long non-coding(lnc) isoforms of known genes 1917 52.42567 7
Osa06LNT0326800.1 6 Osa06LNG0326800 2208765-2209556 long non-coding(lnc) isoforms of known genes 568 57.04225 3
Osa06LNT0349500.2 6 Osa06LNG0349500 22123353-22127346 long non-coding(lnc) isoforms of known genes 1829 47.56698 12
Osa06LNT0349500.1 6 Osa06LNG0349500 22123353-22127346 long non-coding(lnc) isoforms of known genes 1704 48.18075 12
Osa06LNT0326900.1 6 Osa06LNG0326900 2231565-2233725 Antisense lncRNA 479 47.3904 2
Osa06LNT0509100.1 6 Osa06LNG0509100 22369133-22369407 intronic lncRNA 275 23.63636 1
Osa06LNT0509000.1 6 Osa06LNG0509000 22369133-22369407 intronic lncRNA 275 23.63636 1
Osa06LNT0509300.1 6 Osa06LNG0509300 22369474-22369718 intronic lncRNA 245 26.93878 1
Osa06LNT0509200.1 6 Osa06LNG0509200 22369474-22369718 intronic lncRNA 245 26.93878 1
Osa06LNT0509400.1 6 Osa06LNG0509400 22373735-22373979 intergenetic lncRNA (lincRNA) 245 25.30612 1
Osa06LNT0509500.1 6 Osa06LNG0509500 22374046-22374321 intergenetic lncRNA (lincRNA) 276 26.81159 1
Osa06LNT0509600.1 6 Osa06LNG0509600 22380991-22381265 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0509700.1 6 Osa06LNG0509700 22380991-22381265 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0509800.1 6 Osa06LNG0509800 22492547-22492893 intergenetic lncRNA (lincRNA) 347 32.56484 1
Osa06LNT0327000.1 6 Osa06LNG0327000 2251031-2256626 long non-coding(lnc) isoforms of known genes 2812 45.55477 11
Osa06LNT0509900.1 6 Osa06LNG0509900 22567488-22567688 intergenetic lncRNA (lincRNA) 201 23.38308 1
Osa06LNT0349600.1 6 Osa06LNG0349600 22794577-22800135 long non-coding(lnc) isoforms of known genes 1976 53.03644 5
Osa06LNT0349700.1 6 Osa06LNG0349700 22856115-22856945 intergenetic lncRNA (lincRNA) 831 51.26354 1
Osa06LNT0327200.3 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 3269 42.64301 4
Osa06LNT0327200.2 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 1767 50.31126 5
Osa06LNT0327200.1 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 2021 48.63929 5
Osa06LNT0327200.4 6 Osa06LNG0327200 2285947-2289982 sense lncRNA 1878 49.73376 6
Osa06LNT0349800.1 6 Osa06LNG0349800 22953242-22955664 Antisense lncRNA 290 52.75862 2
Osa06LNT0349900.1 6 Osa06LNG0349900 22956669-22962696 long non-coding(lnc) isoforms of known genes 977 56.9089 4
Osa06LNT0327100.1 6 Osa06LNG0327100 2300677-2301294 intergenetic lncRNA (lincRNA) 618 37.54045 1
Osa06LNT0350000.1 6 Osa06LNG0350000 23009014-23009898 intergenetic lncRNA (lincRNA) 798 49.74937 2
Osa06LNT0350100.1 6 Osa06LNG0350100 23013152-23021462 long non-coding(lnc) isoforms of known genes 1240 53.87097 3
Osa06LNT0350200.1 6 Osa06LNG0350200 23096847-23098167 long non-coding(lnc) isoforms of known genes 318 59.43396 2
Osa06LNT0327300.1 6 Osa06LNG0327300 2320914-2329651 long non-coding(lnc) isoforms of known genes 3356 44.42789 25
Osa06LNT0510000.1 6 Osa06LNG0510000 23403970-23404217 intergenetic lncRNA (lincRNA) 248 35.8871 1
Osa06LNT0350300.1 6 Osa06LNG0350300 23442875-23449447 long non-coding(lnc) isoforms of known genes 3657 50.53322 5
Osa06LNT0510100.1 6 Osa06LNG0510100 23455120-23455394 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0510200.1 6 Osa06LNG0510200 23494164-23494401 intergenetic lncRNA (lincRNA) 238 29.41176 1
Osa06LNT0327400.3 6 Osa06LNG0327400 2358310-2365515 long non-coding(lnc) isoforms of known genes 2046 44.91691 15
Osa06LNT0327400.2 6 Osa06LNG0327400 2358310-2365515 long non-coding(lnc) isoforms of known genes 1596 44.61153 15
Osa06LNT0327400.1 6 Osa06LNG0327400 2358310-2365515 long non-coding(lnc) isoforms of known genes 1619 44.59543 15
Osa06LNT0350400.1 6 Osa06LNG0350400 23583722-23586396 intergenetic lncRNA (lincRNA) 2675 35.28972 1
Osa06LNT0350600.1 6 Osa06LNG0350600 23591723-23592240 intergenetic lncRNA (lincRNA) 518 39.38224 1
Osa06LNT0350500.1 6 Osa06LNG0350500 23592510-23592831 intergenetic lncRNA (lincRNA) 322 30.43478 1
Osa06LNT0350700.1 6 Osa06LNG0350700 23613214-23621152 long non-coding(lnc) isoforms of known genes 1788 52.12528 7
Osa06LNT0510300.1 6 Osa06LNG0510300 23634741-23635006 intergenetic lncRNA (lincRNA) 266 26.69173 1
Osa06LNT0327500.1 6 Osa06LNG0327500 2366746-2372091 long non-coding(lnc) isoforms of known genes 2402 46.33639 12
Osa06LNT0327600.1 6 Osa06LNG0327600 2367193-2370423 long non-coding(lnc) isoforms of known genes 2430 36.54321 3
Osa06LNT0350800.1 6 Osa06LNG0350800 23875544-23879853 long non-coding(lnc) isoforms of known genes 1158 52.59067 3
Osa06LNT0350900.1 6 Osa06LNG0350900 23891508-23898712 Antisense lncRNA 2122 42.64844 6
Osa06LNT0351000.1 6 Osa06LNG0351000 23899159-23904493 Antisense lncRNA 1418 51.05783 9
Osa06LNT0351100.1 6 Osa06LNG0351100 23956959-23957731 intergenetic lncRNA (lincRNA) 672 46.875 2
Osa06LNT0351200.1 6 Osa06LNG0351200 24069342-24072302 long non-coding(lnc) isoforms of known genes 818 48.89976 5
Osa06LNT0351300.1 6 Osa06LNG0351300 24091286-24096106 long non-coding(lnc) isoforms of known genes 1766 47.50849 8
Osa06LNT0351400.2 6 Osa06LNG0351400 24142517-24147434 long non-coding(lnc) isoforms of known genes 1204 42.02658 8
Osa06LNT0351400.1 6 Osa06LNG0351400 24142517-24147434 long non-coding(lnc) isoforms of known genes 1410 47.16312 11
Osa06LNT0351500.1 6 Osa06LNG0351500 24195717-24197670 intergenetic lncRNA (lincRNA) 1103 54.21578 2
Osa06LNT0351600.1 6 Osa06LNG0351600 24277407-24282132 long non-coding(lnc) isoforms of known genes 2087 45.85529 14
Osa06LNT0351600.2 6 Osa06LNG0351600 24277407-24282132 long non-coding(lnc) isoforms of known genes 2651 43.64391 13
Osa06LNT0351600.4 6 Osa06LNG0351600 24277407-24282132 long non-coding(lnc) isoforms of known genes 2093 45.86718 14
Osa06LNT0351600.3 6 Osa06LNG0351600 24277407-24282132 long non-coding(lnc) isoforms of known genes 2082 45.82133 14
Osa06LNT0351700.1 6 Osa06LNG0351700 24332053-24338431 long non-coding(lnc) isoforms of known genes 1857 50.56543 14
Osa06LNT0351800.1 6 Osa06LNG0351800 24334294-24335221 long non-coding(lnc) isoforms of known genes 424 38.4434 3
Osa06LNT0327700.1 6 Osa06LNG0327700 2433533-2437377 long non-coding(lnc) isoforms of known genes 1364 52.6393 9
Osa06LNT0351900.1 6 Osa06LNG0351900 24399546-24406121 long non-coding(lnc) isoforms of known genes 3622 56.54335 15
Osa06LNT0352000.1 6 Osa06LNG0352000 24481995-24482805 sense lncRNA 712 51.82584 2
Osa06LNT0352000.2 6 Osa06LNG0352000 24481995-24482805 sense lncRNA 683 50.07321 2
Osa06LNT0352200.1 6 Osa06LNG0352200 24495729-24500436 Antisense lncRNA 1695 55.45723 12
Osa06LNT0352200.2 6 Osa06LNG0352200 24495729-24500436 Antisense lncRNA 1872 53.84615 13
Osa06LNT0352300.1 6 Osa06LNG0352300 24502484-24507123 long non-coding(lnc) isoforms of known genes 2502 56.51479 12
Osa06LNT0352400.1 6 Osa06LNG0352400 24506702-24506925 intergenetic lncRNA (lincRNA) 224 55.35714 1
Osa06LNT0352100.1 6 Osa06LNG0352100 24509578-24511683 intergenetic lncRNA (lincRNA) 1913 39.51908 2
Osa06LNT0352500.1 6 Osa06LNG0352500 24522241-24528522 long non-coding(lnc) isoforms of known genes 1597 59.23607 7
Osa06LNT0510400.1 6 Osa06LNG0510400 24612124-24612354 intergenetic lncRNA (lincRNA) 231 39.39394 1
Osa06LNT0352600.1 6 Osa06LNG0352600 24808764-24811947 sense lncRNA 1378 51.88679 3
Osa06LNT0352700.3 6 Osa06LNG0352700 24813851-24817759 long non-coding(lnc) isoforms of known genes 2227 46.51998 8
Osa06LNT0352700.2 6 Osa06LNG0352700 24813851-24817759 long non-coding(lnc) isoforms of known genes 1833 50.19094 8
Osa06LNT0352700.1 6 Osa06LNG0352700 24813851-24817759 long non-coding(lnc) isoforms of known genes 2313 46.34674 7
Osa06LNT0352800.2 6 Osa06LNG0352800 24946101-24953168 intergenetic lncRNA (lincRNA) 5416 42.9099 5
Osa06LNT0352800.1 6 Osa06LNG0352800 24946101-24953168 intergenetic lncRNA (lincRNA) 5399 42.97092 6
Osa06LNT0352900.1 6 Osa06LNG0352900 24974772-24978033 long non-coding(lnc) isoforms of known genes 2998 43.36224 2
Osa06LNT0353000.1 6 Osa06LNG0353000 24986845-24997890 long non-coding(lnc) isoforms of known genes 3545 43.35684 17
Osa06LNT0327800.1 6 Osa06LNG0327800 2498863-2502887 long non-coding(lnc) isoforms of known genes 1539 46.71865 9
Osa06LNT0353100.1 6 Osa06LNG0353100 25024583-25034830 long non-coding(lnc) isoforms of known genes 2876 46.03616 16
Osa06LNT0353100.2 6 Osa06LNG0353100 25024583-25034830 long non-coding(lnc) isoforms of known genes 2984 45.87802 16
Osa06LNT0353200.1 6 Osa06LNG0353200 25054771-25058817 long non-coding(lnc) isoforms of known genes 1748 53.20366 8
Osa06LNT0327900.1 6 Osa06LNG0327900 2505623-2509012 long non-coding(lnc) isoforms of known genes 1039 50.14437 6
Osa06LNT0353300.1 6 Osa06LNG0353300 25200382-25207810 long non-coding(lnc) isoforms of known genes 3208 43.26683 19
Osa06LNT0328000.1 6 Osa06LNG0328000 2553095-2554545 Antisense lncRNA 359 48.46797 3
Osa06LNT0353400.1 6 Osa06LNG0353400 25669995-25671891 sense lncRNA 760 42.89474 2