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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0179700.1 2 Osa02LNG0179700 28415143-28417062 long non-coding(lnc) isoforms of known genes 1053 44.25451 4
Osa02LNT0179800.1 2 Osa02LNG0179800 28429214-28430034 intergenetic lncRNA (lincRNA) 821 61.02314 1
Osa02LNT0179900.1 2 Osa02LNG0179900 28517219-28521387 long non-coding(lnc) isoforms of known genes 1338 49.77578 5
Osa02LNT0180100.1 2 Osa02LNG0180100 28548351-28551798 long non-coding(lnc) isoforms of known genes 1595 44.82759 12
Osa02LNT0180000.1 2 Osa02LNG0180000 28572927-28574543 intergenetic lncRNA (lincRNA) 1617 58.75077 1
Osa02LNT0180200.1 2 Osa02LNG0180200 28625318-28630932 long non-coding(lnc) isoforms of known genes 2908 41.64374 15
Osa02LNT0180300.1 2 Osa02LNG0180300 28795625-28800683 long non-coding(lnc) isoforms of known genes 3664 46.09716 3
Osa02LNT0180400.3 2 Osa02LNG0180400 28898568-28900900 sense lncRNA 634 47.63407 4
Osa02LNT0180400.2 2 Osa02LNG0180400 28898568-28900900 sense lncRNA 631 47.54358 4
Osa02LNT0180400.1 2 Osa02LNG0180400 28898568-28900900 sense lncRNA 651 47.61905 4
Osa02LNT0180500.1 2 Osa02LNG0180500 28967587-28971989 long non-coding(lnc) isoforms of known genes 1617 49.41249 6
Osa02LNT0180500.2 2 Osa02LNG0180500 28967587-28971989 long non-coding(lnc) isoforms of known genes 3273 39.90223 6
Osa02LNT0146600.1 2 Osa02LNG0146600 2898907-2903732 long non-coding(lnc) isoforms of known genes 3835 44.82399 5
Osa02LNT0180600.1 2 Osa02LNG0180600 29059400-29064276 long non-coding(lnc) isoforms of known genes 3127 48.92869 6
Osa02LNT0180700.1 2 Osa02LNG0180700 29072649-29076550 long non-coding(lnc) isoforms of known genes 1776 51.35135 4
Osa02LNT0180800.1 2 Osa02LNG0180800 29088552-29097436 long non-coding(lnc) isoforms of known genes 5757 39.32604 16
Osa02LNT0180900.1 2 Osa02LNG0180900 29287709-29291570 long non-coding(lnc) isoforms of known genes 2894 49.65446 2
Osa02LNT0181000.1 2 Osa02LNG0181000 29373020-29381657 long non-coding(lnc) isoforms of known genes 2670 44.94382 16
Osa02LNT0181100.1 2 Osa02LNG0181100 29382372-29386574 long non-coding(lnc) isoforms of known genes 3391 43.05515 6
Osa02LNT0481200.1 2 Osa02LNG0481200 29425878-29426140 intergenetic lncRNA (lincRNA) 263 34.60076 1
Osa02LNT0181200.1 2 Osa02LNG0181200 29481005-29482742 long non-coding(lnc) isoforms of known genes 1353 61.19734 2
Osa02LNT0181300.1 2 Osa02LNG0181300 29483433-29495702 long non-coding(lnc) isoforms of known genes 3826 46.83743 24
Osa02LNT0181400.1 2 Osa02LNG0181400 29523354-29528321 long non-coding(lnc) isoforms of known genes 2828 40.77086 7
Osa02LNT0181500.1 2 Osa02LNG0181500 29587103-29592124 long non-coding(lnc) isoforms of known genes 2114 58.13623 4
Osa02LNT0181600.1 2 Osa02LNG0181600 29715886-29718849 sense lncRNA 1886 42.47084 2
Osa02LNT0181700.1 2 Osa02LNG0181700 29795451-29797237 sense lncRNA 708 50.42373 2
Osa02LNT0181800.1 2 Osa02LNG0181800 29804863-29805544 intergenetic lncRNA (lincRNA) 682 55.71848 1
Osa02LNT0181900.1 2 Osa02LNG0181900 29950719-29956811 long non-coding(lnc) isoforms of known genes 2748 44.97817 15
Osa02LNT0181900.2 2 Osa02LNG0181900 29950719-29956811 long non-coding(lnc) isoforms of known genes 3433 42.70318 14
Osa02LNT0182000.1 2 Osa02LNG0182000 29958925-29978911 long non-coding(lnc) isoforms of known genes 1507 42.53484 11
Osa02LNT0182100.1 2 Osa02LNG0182100 30044338-30048008 intergenetic lncRNA (lincRNA) 1017 57.52212 4
Osa02LNT0182200.1 2 Osa02LNG0182200 30053467-30058548 long non-coding(lnc) isoforms of known genes 1297 47.72552 10
Osa02LNT0182300.1 2 Osa02LNG0182300 30102002-30102825 intergenetic lncRNA (lincRNA) 824 59.2233 1
Osa02LNT0182400.1 2 Osa02LNG0182400 30155109-30156448 intergenetic lncRNA (lincRNA) 522 50.95785 3
Osa02LNT0182500.1 2 Osa02LNG0182500 30159145-30159503 intergenetic lncRNA (lincRNA) 359 72.9805 1
Osa02LNT0182700.1 2 Osa02LNG0182700 30232893-30235221 long non-coding(lnc) isoforms of known genes 1522 47.70039 9
Osa02LNT0182600.1 2 Osa02LNG0182600 30238297-30238754 intergenetic lncRNA (lincRNA) 458 51.52838 1
Osa02LNT0182800.1 2 Osa02LNG0182800 30259579-30265652 long non-coding(lnc) isoforms of known genes 4048 51.03755 6
Osa02LNT0473200.1 2 Osa02LNG0473200 3026085-3026312 intergenetic lncRNA (lincRNA) 228 29.82456 1
Osa02LNT0481300.1 2 Osa02LNG0481300 30275264-30275538 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa02LNT0182900.1 2 Osa02LNG0182900 30316251-30319805 long non-coding(lnc) isoforms of known genes 2305 48.19957 11
Osa02LNT0183000.1 2 Osa02LNG0183000 30323406-30325666 long non-coding(lnc) isoforms of known genes 795 49.68553 4
Osa02LNT0183100.1 2 Osa02LNG0183100 30361908-30363806 long non-coding(lnc) isoforms of known genes 1435 63.0662 6
Osa02LNT0183200.1 2 Osa02LNG0183200 30398551-30402611 long non-coding(lnc) isoforms of known genes 1638 44.99389 8
Osa02LNT0183300.2 2 Osa02LNG0183300 30459297-30464310 Antisense lncRNA 2001 40.62969 4
Osa02LNT0183300.1 2 Osa02LNG0183300 30459297-30464310 Antisense lncRNA 2283 40.64827 3
Osa02LNT0183300.3 2 Osa02LNG0183300 30459297-30464310 Antisense lncRNA 1939 40.48479 3
Osa02LNT0183400.2 2 Osa02LNG0183400 30542197-30553539 long non-coding(lnc) isoforms of known genes 5423 43.97935 20
Osa02LNT0183400.1 2 Osa02LNG0183400 30542197-30553539 long non-coding(lnc) isoforms of known genes 6582 42.17563 18
Osa02LNT0183600.1 2 Osa02LNG0183600 30674877-30675542 Antisense lncRNA 315 60.63492 3