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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0353500.1 6 Osa06LNG0353500 25707202-25714678 long non-coding(lnc) isoforms of known genes 4060 46.69951 6
Osa06LNT0353600.1 6 Osa06LNG0353600 25718165-25722139 long non-coding(lnc) isoforms of known genes 1411 47.1297 8
Osa06LNT0353700.1 6 Osa06LNG0353700 25727513-25733219 long non-coding(lnc) isoforms of known genes 2870 47.31707 16
Osa06LNT0353800.1 6 Osa06LNG0353800 25858898-25863343 intergenetic lncRNA (lincRNA) 1094 51.64534 4
Osa06LNT0353900.1 6 Osa06LNG0353900 25928042-25929248 long non-coding(lnc) isoforms of known genes 1077 41.22563 2
Osa06LNT0354000.2 6 Osa06LNG0354000 25963878-25974634 long non-coding(lnc) isoforms of known genes 4197 48.24875 9
Osa06LNT0354000.1 6 Osa06LNG0354000 25963878-25974634 long non-coding(lnc) isoforms of known genes 5861 47.92697 15
Osa06LNT0510500.1 6 Osa06LNG0510500 26031190-26031427 intergenetic lncRNA (lincRNA) 238 42.43697 1
Osa06LNT0510600.1 6 Osa06LNG0510600 26031258-26031457 intergenetic lncRNA (lincRNA) 200 40.0 1
Osa06LNT0354100.1 6 Osa06LNG0354100 26190057-26197385 long non-coding(lnc) isoforms of known genes 3248 41.53325 9
Osa06LNT0354200.2 6 Osa06LNG0354200 26220050-26220355 intergenetic lncRNA (lincRNA) 305 63.93443 1
Osa06LNT0354200.1 6 Osa06LNG0354200 26220050-26220355 intergenetic lncRNA (lincRNA) 306 63.72549 1
Osa06LNT0354300.1 6 Osa06LNG0354300 26242050-26250398 long non-coding(lnc) isoforms of known genes 3574 46.33464 13
Osa06LNT0354400.1 6 Osa06LNG0354400 26254217-26259239 long non-coding(lnc) isoforms of known genes 2119 46.95611 10
Osa06LNT0328200.3 6 Osa06LNG0328200 2635915-2641269 long non-coding(lnc) isoforms of known genes 1420 49.29577 10
Osa06LNT0328200.1 6 Osa06LNG0328200 2635915-2641269 long non-coding(lnc) isoforms of known genes 2087 43.93867 8
Osa06LNT0328200.2 6 Osa06LNG0328200 2635915-2641269 long non-coding(lnc) isoforms of known genes 2014 44.43893 9
Osa06LNT0328200.4 6 Osa06LNG0328200 2635915-2641269 long non-coding(lnc) isoforms of known genes 2354 44.18012 7
Osa06LNT0354500.1 6 Osa06LNG0354500 26361294-26367555 long non-coding(lnc) isoforms of known genes 2766 42.08243 9
Osa06LNT0354600.1 6 Osa06LNG0354600 26421531-26427844 sense lncRNA 1464 59.90437 5
Osa06LNT0328100.1 6 Osa06LNG0328100 2642359-2645172 long non-coding(lnc) isoforms of known genes 863 48.08806 4
Osa06LNT0354700.1 6 Osa06LNG0354700 26471877-26478872 sense lncRNA 6917 40.24866 2
Osa06LNT0354800.3 6 Osa06LNG0354800 26554465-26561225 intergenetic lncRNA (lincRNA) 1964 45.16293 6
Osa06LNT0354800.4 6 Osa06LNG0354800 26554465-26561225 intergenetic lncRNA (lincRNA) 2009 45.69438 6
Osa06LNT0354800.2 6 Osa06LNG0354800 26554465-26561225 intergenetic lncRNA (lincRNA) 2088 45.25862 5
Osa06LNT0354800.1 6 Osa06LNG0354800 26554465-26561225 intergenetic lncRNA (lincRNA) 2091 45.28934 5
Osa06LNT0510700.1 6 Osa06LNG0510700 26640826-26641080 intergenetic lncRNA (lincRNA) 255 29.01961 1
Osa06LNT0354900.1 6 Osa06LNG0354900 26650225-26652370 long non-coding(lnc) isoforms of known genes 1299 64.43418 5
Osa06LNT0355000.1 6 Osa06LNG0355000 26665179-26669578 long non-coding(lnc) isoforms of known genes 1671 47.93537 12
Osa06LNT0510800.1 6 Osa06LNG0510800 26669885-26670140 intergenetic lncRNA (lincRNA) 256 29.29688 1
Osa06LNT0355100.1 6 Osa06LNG0355100 26703275-26703584 intergenetic lncRNA (lincRNA) 310 44.83871 1
Osa06LNT0355300.1 6 Osa06LNG0355300 26785125-26791736 long non-coding(lnc) isoforms of known genes 3782 44.57959 11
Osa06LNT0328300.1 6 Osa06LNG0328300 2679054-2684011 long non-coding(lnc) isoforms of known genes 2193 49.9772 14
Osa06LNT0355200.1 6 Osa06LNG0355200 26843118-26844275 sense lncRNA 1071 63.21195 2
Osa06LNT0510900.1 6 Osa06LNG0510900 27114704-27114917 intergenetic lncRNA (lincRNA) 214 55.60748 1
Osa06LNT0355400.1 6 Osa06LNG0355400 27135569-27144857 long non-coding(lnc) isoforms of known genes 3591 43.91534 23
Osa06LNT0355500.1 6 Osa06LNG0355500 27210975-27211757 intergenetic lncRNA (lincRNA) 783 59.89783 1
Osa06LNT0355600.1 6 Osa06LNG0355600 27265418-27269890 long non-coding(lnc) isoforms of known genes 3168 43.56061 4
Osa06LNT0355700.1 6 Osa06LNG0355700 27273988-27274200 intronic lncRNA 213 25.8216 1
Osa06LNT0355800.1 6 Osa06LNG0355800 27294007-27299327 Antisense lncRNA 668 47.30539 2
Osa06LNT0356200.1 6 Osa06LNG0356200 27316183-27330523 sense lncRNA 1589 40.33984 3
Osa06LNT0356300.1 6 Osa06LNG0356300 27316706-27324236 Antisense lncRNA 790 40.0 2
Osa06LNT0356300.2 6 Osa06LNG0356300 27316706-27324236 Antisense lncRNA 784 39.66837 2
Osa06LNT0356400.3 6 Osa06LNG0356400 27326543-27378419 Antisense lncRNA 725 45.7931 2
Osa06LNT0356400.4 6 Osa06LNG0356400 27326543-27378419 Antisense lncRNA 681 46.69604 2
Osa06LNT0356400.1 6 Osa06LNG0356400 27326543-27378419 Antisense lncRNA 321 58.25545 3
Osa06LNT0356400.2 6 Osa06LNG0356400 27326543-27378419 Antisense lncRNA 403 34.73945 2
Osa06LNT0356500.1 6 Osa06LNG0356500 27333660-27334094 sense lncRNA 308 53.57143 2
Osa06LNT0355900.1 6 Osa06LNG0355900 27402525-27403746 long non-coding(lnc) isoforms of known genes 928 67.56466 3
Osa06LNT0356000.1 6 Osa06LNG0356000 27419365-27427845 long non-coding(lnc) isoforms of known genes 2356 45.88285 16
Osa06LNT0356100.1 6 Osa06LNG0356100 27428890-27431107 long non-coding(lnc) isoforms of known genes 1903 50.86705 2
Osa06LNT0356600.1 6 Osa06LNG0356600 27492866-27499531 long non-coding(lnc) isoforms of known genes 2365 56.06765 12
Osa06LNT0356700.1 6 Osa06LNG0356700 27545628-27546423 intergenetic lncRNA (lincRNA) 796 55.65327 1
Osa06LNT0511000.1 6 Osa06LNG0511000 27574529-27574736 intergenetic lncRNA (lincRNA) 208 37.5 1
Osa06LNT0356800.1 6 Osa06LNG0356800 27654732-27654962 Antisense lncRNA 231 51.08225 1
Osa06LNT0324000.1 6 Osa06LNG0324000 276729-282165 long non-coding(lnc) isoforms of known genes 2707 46.69376 14
Osa06LNT0324000.3 6 Osa06LNG0324000 276729-282165 long non-coding(lnc) isoforms of known genes 2711 46.66175 14
Osa06LNT0324000.2 6 Osa06LNG0324000 276729-282165 long non-coding(lnc) isoforms of known genes 2548 46.93878 15
Osa06LNT0511100.1 6 Osa06LNG0511100 27674746-27674951 intergenetic lncRNA (lincRNA) 206 45.14563 1
Osa06LNT0356900.1 6 Osa06LNG0356900 27708558-27718445 long non-coding(lnc) isoforms of known genes 4943 43.37447 17
Osa06LNT0356900.2 6 Osa06LNG0356900 27708558-27718445 long non-coding(lnc) isoforms of known genes 4040 43.5396 15
Osa06LNT0357000.1 6 Osa06LNG0357000 27734973-27740719 long non-coding(lnc) isoforms of known genes 1513 50.82617 9
Osa06LNT0328400.3 6 Osa06LNG0328400 2774537-2779814 long non-coding(lnc) isoforms of known genes 1143 46.89414 8
Osa06LNT0328400.1 6 Osa06LNG0328400 2774537-2779814 long non-coding(lnc) isoforms of known genes 1650 43.45455 6
Osa06LNT0328400.2 6 Osa06LNG0328400 2774537-2779814 long non-coding(lnc) isoforms of known genes 1042 47.98464 7
Osa06LNT0357100.1 6 Osa06LNG0357100 27814803-27815748 intergenetic lncRNA (lincRNA) 801 39.70037 2
Osa06LNT0357300.1 6 Osa06LNG0357300 27923555-27926275 sense lncRNA 938 49.25373 3
Osa06LNT0357200.1 6 Osa06LNG0357200 27929735-27932433 long non-coding(lnc) isoforms of known genes 867 47.2895 3
Osa06LNT0357400.1 6 Osa06LNG0357400 27953257-27956709 sense lncRNA 1483 49.02225 2
Osa06LNT0357500.3 6 Osa06LNG0357500 27960874-27971394 long non-coding(lnc) isoforms of known genes 681 43.46549 6
Osa06LNT0357500.1 6 Osa06LNG0357500 27960874-27971394 long non-coding(lnc) isoforms of known genes 234 42.73504 3
Osa06LNT0357500.2 6 Osa06LNG0357500 27960874-27971394 long non-coding(lnc) isoforms of known genes 641 43.83775 5
Osa06LNT0511200.1 6 Osa06LNG0511200 27997452-27997665 intergenetic lncRNA (lincRNA) 214 39.25234 1
Osa06LNT0357600.1 6 Osa06LNG0357600 28059549-28065151 long non-coding(lnc) isoforms of known genes 2112 45.73864 14
Osa06LNT0357700.1 6 Osa06LNG0357700 28173143-28174156 intergenetic lncRNA (lincRNA) 1014 45.26627 1
Osa06LNT0357800.1 6 Osa06LNG0357800 28183101-28183908 intergenetic lncRNA (lincRNA) 808 34.5297 1
Osa06LNT0357900.1 6 Osa06LNG0357900 28191068-28196198 long non-coding(lnc) isoforms of known genes 1971 46.72755 11
Osa06LNT0358100.1 6 Osa06LNG0358100 28208657-28234184 long non-coding(lnc) isoforms of known genes 10449 40.24309 39
Osa06LNT0496700.1 6 Osa06LNG0496700 2827563-2827765 intergenetic lncRNA (lincRNA) 203 22.6601 1
Osa06LNT0358000.2 6 Osa06LNG0358000 28281180-28285338 long non-coding(lnc) isoforms of known genes 1593 50.09416 6
Osa06LNT0358000.1 6 Osa06LNG0358000 28281180-28285338 long non-coding(lnc) isoforms of known genes 2231 45.85388 5
Osa06LNT0358200.1 6 Osa06LNG0358200 28390431-28396001 long non-coding(lnc) isoforms of known genes 3082 43.64049 6
Osa06LNT0358200.2 6 Osa06LNG0358200 28390431-28396001 long non-coding(lnc) isoforms of known genes 795 54.96855 3
Osa06LNT0511300.1 6 Osa06LNG0511300 28442533-28442789 intergenetic lncRNA (lincRNA) 257 28.01556 1
Osa06LNT0358400.1 6 Osa06LNG0358400 28457982-28463484 long non-coding(lnc) isoforms of known genes 3098 43.86701 10
Osa06LNT0358300.2 6 Osa06LNG0358300 28463798-28466237 long non-coding(lnc) isoforms of known genes 1592 49.5603 5
Osa06LNT0358300.1 6 Osa06LNG0358300 28463798-28466237 long non-coding(lnc) isoforms of known genes 1908 47.48428 4
Osa06LNT0358500.1 6 Osa06LNG0358500 28504187-28508822 long non-coding(lnc) isoforms of known genes 2433 42.66338 10
Osa06LNT0358600.1 6 Osa06LNG0358600 28639414-28641655 intergenetic lncRNA (lincRNA) 589 50.93379 4
Osa06LNT0358700.1 6 Osa06LNG0358700 28658265-28662647 long non-coding(lnc) isoforms of known genes 1974 49.54407 11
Osa06LNT0358800.1 6 Osa06LNG0358800 28682065-28687077 long non-coding(lnc) isoforms of known genes 2122 49.05749 14
Osa06LNT0496800.1 6 Osa06LNG0496800 2868835-2869039 intergenetic lncRNA (lincRNA) 205 22.43902 1
Osa06LNT0358900.1 6 Osa06LNG0358900 28706875-28708349 long non-coding(lnc) isoforms of known genes 803 52.92653 3
Osa06LNT0359000.1 6 Osa06LNG0359000 28807709-28815595 long non-coding(lnc) isoforms of known genes 3332 41.14646 17
Osa06LNT0359100.1 6 Osa06LNG0359100 28969545-28974541 long non-coding(lnc) isoforms of known genes 2470 50.93117 3
Osa06LNT0359200.1 6 Osa06LNG0359200 28988099-28990115 long non-coding(lnc) isoforms of known genes 1795 40.89136 2
Osa06LNT0359300.1 6 Osa06LNG0359300 28989047-28989940 Antisense lncRNA 526 38.97338 3
Osa06LNT0328500.1 6 Osa06LNG0328500 2908148-2910469 long non-coding(lnc) isoforms of known genes 1358 57.58468 4
Osa06LNT0328600.1 6 Osa06LNG0328600 2908506-2910062 sense lncRNA 785 57.07006 2
Osa06LNT0359400.1 6 Osa06LNG0359400 29173235-29175519 long non-coding(lnc) isoforms of known genes 670 49.25373 5