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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0331800.1 6 Osa06LNG0331800 4870920-4874735 long non-coding(lnc) isoforms of known genes 2528 46.99367 3
Osa06LNT0332100.1 6 Osa06LNG0332100 4918893-4919297 intergenetic lncRNA (lincRNA) 405 69.1358 1
Osa06LNT0497300.1 6 Osa06LNG0497300 4993658-4993902 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa06LNT0497400.1 6 Osa06LNG0497400 4993658-4993902 intergenetic lncRNA (lincRNA) 245 27.34694 1
Osa06LNT0497500.1 6 Osa06LNG0497500 4993969-4994243 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0497600.1 6 Osa06LNG0497600 4993969-4994243 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa06LNT0497700.1 6 Osa06LNG0497700 4994427-4994688 intergenetic lncRNA (lincRNA) 262 41.22137 1
Osa06LNT0332200.1 6 Osa06LNG0332200 5005417-5008049 sense lncRNA 911 49.17673 3
Osa06LNT0332300.1 6 Osa06LNG0332300 5012418-5016651 long non-coding(lnc) isoforms of known genes 1260 44.28571 6
Osa06LNT0332400.2 6 Osa06LNG0332400 5024373-5034803 long non-coding(lnc) isoforms of known genes 6597 39.60891 7
Osa06LNT0332400.1 6 Osa06LNG0332400 5024373-5034803 long non-coding(lnc) isoforms of known genes 4814 44.30827 9
Osa06LNT0332500.1 6 Osa06LNG0332500 5054918-5056798 long non-coding(lnc) isoforms of known genes 1104 47.19203 3
Osa06LNT0332600.1 6 Osa06LNG0332600 5088086-5097867 sense lncRNA 1114 50.8079 2
Osa06LNT0332700.1 6 Osa06LNG0332700 5186447-5188307 long non-coding(lnc) isoforms of known genes 1537 40.85882 4
Osa06LNT0332800.1 6 Osa06LNG0332800 5276714-5286101 long non-coding(lnc) isoforms of known genes 1684 47.56532 18
Osa06LNT0332800.2 6 Osa06LNG0332800 5276714-5286101 long non-coding(lnc) isoforms of known genes 2955 43.35025 17
Osa06LNT0332900.1 6 Osa06LNG0332900 5354162-5354800 intergenetic lncRNA (lincRNA) 639 66.51017 1
Osa06LNT0333000.1 6 Osa06LNG0333000 5409030-5410024 sense lncRNA 735 50.61224 2
Osa06LNT0333100.1 6 Osa06LNG0333100 5461149-5471936 long non-coding(lnc) isoforms of known genes 2758 44.23495 13
Osa06LNT0333200.1 6 Osa06LNG0333200 5523839-5530352 long non-coding(lnc) isoforms of known genes 3053 46.60989 22
Osa06LNT0497800.1 6 Osa06LNG0497800 5563271-5563484 intergenetic lncRNA (lincRNA) 214 56.54206 1
Osa06LNT0333400.1 6 Osa06LNG0333400 5575897-5583890 long non-coding(lnc) isoforms of known genes 3515 43.32859 19
Osa06LNT0333300.1 6 Osa06LNG0333300 5601778-5604982 long non-coding(lnc) isoforms of known genes 870 51.26437 2
Osa06LNT0497900.1 6 Osa06LNG0497900 5754034-5754234 intergenetic lncRNA (lincRNA) 201 33.33333 1
Osa06LNT0333600.1 6 Osa06LNG0333600 5773657-5777294 long non-coding(lnc) isoforms of known genes 1270 56.77165 8
Osa06LNT0333500.1 6 Osa06LNG0333500 5778734-5779505 intergenetic lncRNA (lincRNA) 772 55.18135 1
Osa06LNT0333700.1 6 Osa06LNG0333700 5784199-5786277 long non-coding(lnc) isoforms of known genes 1990 39.74874 2
Osa06LNT0333800.1 6 Osa06LNG0333800 5837535-5844481 long non-coding(lnc) isoforms of known genes 2725 57.46789 12
Osa06LNT0333900.1 6 Osa06LNG0333900 5857430-5861115 long non-coding(lnc) isoforms of known genes 1055 47.39336 6
Osa06LNT0334000.1 6 Osa06LNG0334000 5918191-5919676 sense lncRNA 1367 57.20556 2
Osa06LNT0334100.1 6 Osa06LNG0334100 5977401-5980737 long non-coding(lnc) isoforms of known genes 1113 56.33423 5
Osa06LNT0334200.1 6 Osa06LNG0334200 5982681-5998715 long non-coding(lnc) isoforms of known genes 4057 44.34311 23
Osa06LNT0334400.2 6 Osa06LNG0334400 6036739-6046262 long non-coding(lnc) isoforms of known genes 2132 46.81051 19
Osa06LNT0334400.1 6 Osa06LNG0334400 6036739-6046262 long non-coding(lnc) isoforms of known genes 2128 46.80451 19
Osa06LNT0334300.1 6 Osa06LNG0334300 6046744-6050316 long non-coding(lnc) isoforms of known genes 3314 42.45625 4
Osa06LNT0334600.2 6 Osa06LNG0334600 6088114-6097660 long non-coding(lnc) isoforms of known genes 3079 44.46249 21
Osa06LNT0334600.1 6 Osa06LNG0334600 6088114-6097660 long non-coding(lnc) isoforms of known genes 2809 44.92702 21
Osa06LNT0334500.1 6 Osa06LNG0334500 6152002-6153244 sense lncRNA 1106 63.6528 2
Osa06LNT0334700.1 6 Osa06LNG0334700 6243743-6247717 long non-coding(lnc) isoforms of known genes 1699 48.02825 7
Osa06LNT0334800.1 6 Osa06LNG0334800 6277319-6280812 long non-coding(lnc) isoforms of known genes 893 48.1523 7
Osa06LNT0324300.1 6 Osa06LNG0324300 629986-633799 long non-coding(lnc) isoforms of known genes 3017 50.04972 8
Osa06LNT0324300.2 6 Osa06LNG0324300 629986-633799 long non-coding(lnc) isoforms of known genes 3028 50.06605 8
Osa06LNT0334900.1 6 Osa06LNG0334900 6440527-6447589 long non-coding(lnc) isoforms of known genes 2625 42.78095 7
Osa06LNT0335000.1 6 Osa06LNG0335000 6477679-6478637 intronic lncRNA 598 45.1505 2
Osa06LNT0335100.1 6 Osa06LNG0335100 6489534-6493821 long non-coding(lnc) isoforms of known genes 705 54.46809 4
Osa06LNT0335100.2 6 Osa06LNG0335100 6489534-6493821 long non-coding(lnc) isoforms of known genes 700 54.57143 4
Osa06LNT0498100.1 6 Osa06LNG0498100 6499654-6499903 intergenetic lncRNA (lincRNA) 250 27.6 1
Osa06LNT0498000.1 6 Osa06LNG0498000 6499654-6499903 intergenetic lncRNA (lincRNA) 250 27.6 1
Osa06LNT0335200.1 6 Osa06LNG0335200 6503743-6514424 long non-coding(lnc) isoforms of known genes 3496 49.39931 24
Osa06LNT0335300.1 6 Osa06LNG0335300 6648430-6652995 long non-coding(lnc) isoforms of known genes 2203 51.88379 4
Osa06LNT0335400.1 6 Osa06LNG0335400 6823036-6832896 long non-coding(lnc) isoforms of known genes 3880 47.80928 13
Osa06LNT0335500.1 6 Osa06LNG0335500 6906933-6908001 long non-coding(lnc) isoforms of known genes 947 47.51848 2
Osa06LNT0335600.1 6 Osa06LNG0335600 7005888-7008330 long non-coding(lnc) isoforms of known genes 1544 62.24093 3
Osa06LNT0335800.1 6 Osa06LNG0335800 7078859-7082232 long non-coding(lnc) isoforms of known genes 1330 47.66917 8
Osa06LNT0335700.1 6 Osa06LNG0335700 7086668-7088509 sense lncRNA 296 49.66216 2
Osa06LNT0335900.1 6 Osa06LNG0335900 7120876-7122798 sense lncRNA 919 43.30794 7
Osa06LNT0336000.1 6 Osa06LNG0336000 7128403-7133562 long non-coding(lnc) isoforms of known genes 2859 43.19692 12
Osa06LNT0336100.1 6 Osa06LNG0336100 7148668-7155330 long non-coding(lnc) isoforms of known genes 2171 46.70659 17
Osa06LNT0336200.1 6 Osa06LNG0336200 7160043-7164695 long non-coding(lnc) isoforms of known genes 2297 50.76186 12
Osa06LNT0336300.1 6 Osa06LNG0336300 7169239-7173005 long non-coding(lnc) isoforms of known genes 2287 49.71578 5
Osa06LNT0336400.1 6 Osa06LNG0336400 7287849-7290591 long non-coding(lnc) isoforms of known genes 1084 52.95203 2
Osa06LNT0498200.1 6 Osa06LNG0498200 7387215-7387488 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa06LNT0498300.1 6 Osa06LNG0498300 7387215-7387488 intergenetic lncRNA (lincRNA) 274 26.27737 1
Osa06LNT0336500.1 6 Osa06LNG0336500 7406049-7408609 long non-coding(lnc) isoforms of known genes 1952 37.80738 3
Osa06LNT0498400.1 6 Osa06LNG0498400 7451886-7452155 intergenetic lncRNA (lincRNA) 270 24.07407 1
Osa06LNT0498500.1 6 Osa06LNG0498500 7451886-7452155 intergenetic lncRNA (lincRNA) 270 24.07407 1
Osa06LNT0498600.1 6 Osa06LNG0498600 7452524-7452791 intergenetic lncRNA (lincRNA) 268 38.43284 1
Osa06LNT0336600.1 6 Osa06LNG0336600 7497904-7500603 long non-coding(lnc) isoforms of known genes 1373 53.75091 9
Osa06LNT0336700.1 6 Osa06LNG0336700 7563895-7570729 sense lncRNA 4114 45.47885 5
Osa06LNT0336800.1 6 Osa06LNG0336800 7765020-7769421 sense lncRNA 2655 44.97175 6
Osa06LNT0324400.1 6 Osa06LNG0324400 783550-783946 intergenetic lncRNA (lincRNA) 397 61.71285 1
Osa06LNT0336900.1 6 Osa06LNG0336900 7841699-7844795 long non-coding(lnc) isoforms of known genes 1954 45.49642 2
Osa06LNT0337000.1 6 Osa06LNG0337000 7849659-7851484 long non-coding(lnc) isoforms of known genes 1444 41.27424 5
Osa06LNT0498800.1 6 Osa06LNG0498800 8018484-8018769 intergenetic lncRNA (lincRNA) 286 24.47552 1
Osa06LNT0498700.1 6 Osa06LNG0498700 8018484-8018769 intergenetic lncRNA (lincRNA) 286 24.47552 1
Osa06LNT0498900.1 6 Osa06LNG0498900 8018836-8019078 intergenetic lncRNA (lincRNA) 243 25.10288 1
Osa06LNT0337100.1 6 Osa06LNG0337100 8030009-8035424 intergenetic lncRNA (lincRNA) 3286 49.54352 4
Osa06LNT0337100.2 6 Osa06LNG0337100 8030009-8035424 intergenetic lncRNA (lincRNA) 2611 53.581 6
Osa06LNT0324600.1 6 Osa06LNG0324600 811074-816533 long non-coding(lnc) isoforms of known genes 2106 47.10351 15
Osa06LNT0337200.1 6 Osa06LNG0337200 8129580-8134434 long non-coding(lnc) isoforms of known genes 1725 45.56522 6
Osa06LNT0499000.1 6 Osa06LNG0499000 8169348-8169571 intergenetic lncRNA (lincRNA) 224 52.67857 1
Osa06LNT0337300.1 6 Osa06LNG0337300 8194555-8198058 long non-coding(lnc) isoforms of known genes 667 51.72414 4
Osa06LNT0324500.1 6 Osa06LNG0324500 829102-830809 long non-coding(lnc) isoforms of known genes 823 58.93074 3
Osa06LNT0337400.1 6 Osa06LNG0337400 8317764-8324878 long non-coding(lnc) isoforms of known genes 4429 42.47008 10
Osa06LNT0337500.1 6 Osa06LNG0337500 8324988-8326089 intergenetic lncRNA (lincRNA) 1015 57.04433 2
Osa06LNT0337600.1 6 Osa06LNG0337600 8372433-8376921 sense lncRNA 1553 60.91436 2
Osa06LNT0324700.1 6 Osa06LNG0324700 841382-844109 long non-coding(lnc) isoforms of known genes 1555 46.04502 2
Osa06LNT0324800.1 6 Osa06LNG0324800 847248-849315 intergenetic lncRNA (lincRNA) 642 40.96573 3
Osa06LNT0499100.1 6 Osa06LNG0499100 8525498-8525739 intergenetic lncRNA (lincRNA) 242 48.34711 1
Osa06LNT0499200.1 6 Osa06LNG0499200 8573115-8573358 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa06LNT0499300.1 6 Osa06LNG0499300 8573115-8573358 intergenetic lncRNA (lincRNA) 244 24.59016 1
Osa06LNT0499500.1 6 Osa06LNG0499500 8573425-8573699 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa06LNT0499400.1 6 Osa06LNG0499400 8573425-8573699 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa06LNT0499600.1 6 Osa06LNG0499600 8600706-8600918 intergenetic lncRNA (lincRNA) 213 37.55869 1
Osa06LNT0324900.1 6 Osa06LNG0324900 864345-866959 long non-coding(lnc) isoforms of known genes 1732 49.48037 7
Osa06LNT0337700.1 6 Osa06LNG0337700 8753354-8757513 long non-coding(lnc) isoforms of known genes 1580 48.41772 13
Osa06LNT0337800.2 6 Osa06LNG0337800 8827098-8832586 Antisense lncRNA 5367 45.22079 2
Osa06LNT0337800.3 6 Osa06LNG0337800 8827098-8832586 Antisense lncRNA 286 53.4965 2
Osa06LNT0337800.1 6 Osa06LNG0337800 8827098-8832586 Antisense lncRNA 1268 51.41956 2
Osa06LNT0337900.1 6 Osa06LNG0337900 8837359-8837561 intronic lncRNA 203 40.8867 1