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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa02LNT0482100.1 2 Osa02LNG0482100 34851631-34851861 intergenetic lncRNA (lincRNA) 231 26.83983 1
Osa02LNT0190300.3 2 Osa02LNG0190300 34882568-34888336 long non-coding(lnc) isoforms of known genes 2210 44.0724 17
Osa02LNT0190300.2 2 Osa02LNG0190300 34882568-34888336 long non-coding(lnc) isoforms of known genes 2380 44.36975 18
Osa02LNT0190300.1 2 Osa02LNG0190300 34882568-34888336 long non-coding(lnc) isoforms of known genes 2215 44.06321 17
Osa02LNT0190400.1 2 Osa02LNG0190400 34903151-34910811 long non-coding(lnc) isoforms of known genes 2889 43.82139 18
Osa02LNT0190500.2 2 Osa02LNG0190500 34915787-34917986 long non-coding(lnc) isoforms of known genes 1497 44.68938 7
Osa02LNT0190500.1 2 Osa02LNG0190500 34915787-34917986 long non-coding(lnc) isoforms of known genes 1303 45.51036 9
Osa02LNT0190600.1 2 Osa02LNG0190600 35004914-35008703 long non-coding(lnc) isoforms of known genes 2315 43.19654 11
Osa02LNT0190700.1 2 Osa02LNG0190700 35008809-35009193 intergenetic lncRNA (lincRNA) 269 71.00372 2
Osa02LNT0190800.1 2 Osa02LNG0190800 35056969-35062529 long non-coding(lnc) isoforms of known genes 1580 44.3038 15
Osa02LNT0190900.1 2 Osa02LNG0190900 35115995-35122764 long non-coding(lnc) isoforms of known genes 3405 50.22026 10
Osa02LNT0191000.1 2 Osa02LNG0191000 35170618-35175115 long non-coding(lnc) isoforms of known genes 2412 49.46103 7
Osa02LNT0191100.1 2 Osa02LNG0191100 35179248-35184143 long non-coding(lnc) isoforms of known genes 1768 50.39593 13
Osa02LNT0191200.1 2 Osa02LNG0191200 35256169-35258226 long non-coding(lnc) isoforms of known genes 954 50.10482 4
Osa02LNT0191400.1 2 Osa02LNG0191400 35307893-35313608 long non-coding(lnc) isoforms of known genes 3214 46.57747 8
Osa02LNT0191300.1 2 Osa02LNG0191300 35325638-35331918 long non-coding(lnc) isoforms of known genes 2632 43.69301 13
Osa02LNT0191500.1 2 Osa02LNG0191500 35421604-35423681 long non-coding(lnc) isoforms of known genes 557 47.39677 2
Osa02LNT0191700.1 2 Osa02LNG0191700 35452274-35459895 long non-coding(lnc) isoforms of known genes 4802 45.85589 14
Osa02LNT0191700.2 2 Osa02LNG0191700 35452274-35459895 long non-coding(lnc) isoforms of known genes 2792 51.5043 15
Osa02LNT0191600.1 2 Osa02LNG0191600 35460664-35464861 long non-coding(lnc) isoforms of known genes 2978 37.70987 4
Osa02LNT0191800.1 2 Osa02LNG0191800 35502083-35507039 long non-coding(lnc) isoforms of known genes 2636 49.35508 10
Osa02LNT0191900.1 2 Osa02LNG0191900 35517553-35523356 long non-coding(lnc) isoforms of known genes 2405 47.94179 18
Osa02LNT0147400.1 2 Osa02LNG0147400 3557495-3558801 intergenetic lncRNA (lincRNA) 567 38.62434 2
Osa02LNT0147300.1 2 Osa02LNG0147300 3561963-3562601 intergenetic lncRNA (lincRNA) 639 32.39437 1
Osa02LNT0192000.1 2 Osa02LNG0192000 35667571-35671730 long non-coding(lnc) isoforms of known genes 2093 52.50836 12
Osa02LNT0192100.1 2 Osa02LNG0192100 35713123-35713706 intergenetic lncRNA (lincRNA) 584 47.43151 1
Osa02LNT0192200.1 2 Osa02LNG0192200 35757157-35757652 intronic lncRNA 496 29.03226 1
Osa02LNT0192300.1 2 Osa02LNG0192300 35761332-35768388 long non-coding(lnc) isoforms of known genes 2878 46.10841 22
Osa02LNT0147500.1 2 Osa02LNG0147500 3580321-3581706 sense lncRNA 841 50.8918 2
Osa02LNT0192400.1 2 Osa02LNG0192400 35812639-35818178 long non-coding(lnc) isoforms of known genes 1834 48.96401 18
Osa02LNT0192500.1 2 Osa02LNG0192500 35932596-35933176 intergenetic lncRNA (lincRNA) 581 46.4716 1
Osa02LNT0147700.2 2 Osa02LNG0147700 3623786-3631539 long non-coding(lnc) isoforms of known genes 4434 44.54217 15
Osa02LNT0147700.1 2 Osa02LNG0147700 3623786-3631539 long non-coding(lnc) isoforms of known genes 3520 46.875 16
Osa02LNT0147700.3 2 Osa02LNG0147700 3623786-3631539 long non-coding(lnc) isoforms of known genes 3863 45.68988 16
Osa02LNT0147600.1 2 Osa02LNG0147600 3655262-3656228 sense lncRNA 694 50.14409 2
Osa02LNT0147800.2 2 Osa02LNG0147800 3705886-3709861 long non-coding(lnc) isoforms of known genes 1119 45.48704 10
Osa02LNT0147800.1 2 Osa02LNG0147800 3705886-3709861 long non-coding(lnc) isoforms of known genes 1091 45.46288 10
Osa02LNT0473300.1 2 Osa02LNG0473300 3742238-3742515 intergenetic lncRNA (lincRNA) 278 46.40288 1
Osa02LNT0473400.1 2 Osa02LNG0473400 3742239-3742516 intergenetic lncRNA (lincRNA) 278 46.04317 1
Osa02LNT0147900.1 2 Osa02LNG0147900 3846223-3850113 long non-coding(lnc) isoforms of known genes 1296 52.5463 3
Osa02LNT0148100.1 2 Osa02LNG0148100 3855966-3863856 long non-coding(lnc) isoforms of known genes 1933 43.5075 14
Osa02LNT0148000.1 2 Osa02LNG0148000 3925270-3926116 intergenetic lncRNA (lincRNA) 847 57.49705 1
Osa02LNT0473500.1 2 Osa02LNG0473500 3939456-3939729 intergenetic lncRNA (lincRNA) 274 29.92701 1
Osa02LNT0473600.1 2 Osa02LNG0473600 3939456-3939729 intergenetic lncRNA (lincRNA) 274 29.92701 1
Osa02LNT0148200.1 2 Osa02LNG0148200 3950459-3955968 long non-coding(lnc) isoforms of known genes 3201 47.29772 9
Osa02LNT0473700.1 2 Osa02LNG0473700 3963618-3963872 intergenetic lncRNA (lincRNA) 255 27.84314 1
Osa02LNT0148300.2 2 Osa02LNG0148300 3992137-3995037 long non-coding(lnc) isoforms of known genes 1202 50.99834 8
Osa02LNT0148300.1 2 Osa02LNG0148300 3992137-3995037 long non-coding(lnc) isoforms of known genes 1199 51.04254 8
Osa02LNT0148400.1 2 Osa02LNG0148400 4057866-4060817 long non-coding(lnc) isoforms of known genes 1996 55.51102 6
Osa02LNT0148500.3 2 Osa02LNG0148500 4165386-4175490 long non-coding(lnc) isoforms of known genes 4501 45.83426 17