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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs

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Transcript id Chrom Gene Location Classification Length GC Content(%) Exon Number
Osa06LNT0338000.1 6 Osa06LNG0338000 8868053-8869886 long non-coding(lnc) isoforms of known genes 1753 54.07872 2
Osa06LNT0325000.1 6 Osa06LNG0325000 893171-896275 intergenetic lncRNA (lincRNA) 1533 58.64318 4
Osa06LNT0338100.1 6 Osa06LNG0338100 8939303-8940456 intergenetic lncRNA (lincRNA) 331 55.89124 2
Osa06LNT0338200.1 6 Osa06LNG0338200 8960029-8964614 long non-coding(lnc) isoforms of known genes 1981 49.72236 6
Osa06LNT0338200.2 6 Osa06LNG0338200 8960029-8964614 long non-coding(lnc) isoforms of known genes 1958 41.21553 4
Osa06LNT0499700.1 6 Osa06LNG0499700 9130318-9130590 intergenetic lncRNA (lincRNA) 273 27.83883 1
Osa06LNT0338300.1 6 Osa06LNG0338300 9131060-9135024 long non-coding(lnc) isoforms of known genes 3716 42.19591 4
Osa06LNT0338400.1 6 Osa06LNG0338400 9266839-9278517 long non-coding(lnc) isoforms of known genes 3124 42.54161 31
Osa06LNT0338500.1 6 Osa06LNG0338500 9278574-9281214 intergenetic lncRNA (lincRNA) 487 60.57495 2
Osa06LNT0496100.1 6 Osa06LNG0496100 939271-939495 intergenetic lncRNA (lincRNA) 225 39.55556 1
Osa06LNT0499900.1 6 Osa06LNG0499900 9547257-9547531 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa06LNT0499800.1 6 Osa06LNG0499800 9547257-9547531 intergenetic lncRNA (lincRNA) 275 24.0 1
Osa06LNT0500000.1 6 Osa06LNG0500000 9547598-9547842 intergenetic lncRNA (lincRNA) 245 24.08163 1
Osa06LNT0500100.1 6 Osa06LNG0500100 9615626-9615851 intergenetic lncRNA (lincRNA) 226 49.55752 1
Osa06LNT0500200.1 6 Osa06LNG0500200 9632408-9632682 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0500300.1 6 Osa06LNG0500300 9632408-9632682 intergenetic lncRNA (lincRNA) 275 25.45455 1
Osa06LNT0338600.1 6 Osa06LNG0338600 9634121-9636421 long non-coding(lnc) isoforms of known genes 1041 48.1268 3
Osa06LNT0338700.1 6 Osa06LNG0338700 9805281-9809057 sense lncRNA 965 62.90155 2
Osa06LNT0338900.1 6 Osa06LNG0338900 9840913-9857072 long non-coding(lnc) isoforms of known genes 3993 43.35086 21
Osa06LNT0338900.2 6 Osa06LNG0338900 9840913-9857072 long non-coding(lnc) isoforms of known genes 3876 43.47265 22
Osa06LNT0338800.1 6 Osa06LNG0338800 9917560-9918729 intronic lncRNA 1170 41.02564 1
Osa07LNT0374000.1 7 Osa07LNG0374000 10057776-10060822 long non-coding(lnc) isoforms of known genes 1338 44.39462 3
Osa07LNT0374100.1 7 Osa07LNG0374100 10127751-10138242 long non-coding(lnc) isoforms of known genes 3104 43.29897 13
Osa07LNT0374200.1 7 Osa07LNG0374200 10180456-10200241 long non-coding(lnc) isoforms of known genes 4527 44.28982 6
Osa07LNT0374300.1 7 Osa07LNG0374300 10494806-10495235 intergenetic lncRNA (lincRNA) 430 66.74419 1
Osa07LNT0525700.1 7 Osa07LNG0525700 10504352-10504626 intergenetic lncRNA (lincRNA) 275 23.63636 1
Osa07LNT0525800.1 7 Osa07LNG0525800 10512143-10512417 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa07LNT0525900.1 7 Osa07LNG0525900 10512143-10512417 intergenetic lncRNA (lincRNA) 275 26.90909 1
Osa07LNT0526000.1 7 Osa07LNG0526000 10543156-10543431 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa07LNT0526100.1 7 Osa07LNG0526100 10543156-10543431 intergenetic lncRNA (lincRNA) 276 25.0 1
Osa07LNT0526200.1 7 Osa07LNG0526200 10554865-10555122 intergenetic lncRNA (lincRNA) 258 25.96899 1
Osa07LNT0526300.1 7 Osa07LNG0526300 10554865-10555122 intergenetic lncRNA (lincRNA) 258 25.96899 1
Osa07LNT0526400.1 7 Osa07LNG0526400 10560572-10560781 intergenetic lncRNA (lincRNA) 210 44.7619 1
Osa07LNT0526500.1 7 Osa07LNG0526500 10616566-10616809 intergenetic lncRNA (lincRNA) 244 23.77049 1
Osa07LNT0374400.1 7 Osa07LNG0374400 10716314-10716857 intergenetic lncRNA (lincRNA) 544 61.58088 1
Osa07LNT0374600.1 7 Osa07LNG0374600 10817341-10825069 long non-coding(lnc) isoforms of known genes 1917 47.05269 10
Osa07LNT0374600.2 7 Osa07LNG0374600 10817341-10825069 long non-coding(lnc) isoforms of known genes 1786 48.20829 11
Osa07LNT0363900.1 7 Osa07LNG0363900 1085802-1089210 long non-coding(lnc) isoforms of known genes 1533 58.83888 3
Osa07LNT0374500.1 7 Osa07LNG0374500 10929310-10934483 intergenetic lncRNA (lincRNA) 4011 48.71603 2
Osa07LNT0374700.1 7 Osa07LNG0374700 10938269-10938532 intronic lncRNA 264 51.51515 1
Osa07LNT0526600.1 7 Osa07LNG0526600 10963588-10963861 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa07LNT0526700.1 7 Osa07LNG0526700 10963588-10963861 intergenetic lncRNA (lincRNA) 274 30.65693 1
Osa07LNT0526800.1 7 Osa07LNG0526800 11141260-11141534 intergenetic lncRNA (lincRNA) 275 25.09091 1
Osa07LNT0374800.1 7 Osa07LNG0374800 11222033-11225287 long non-coding(lnc) isoforms of known genes 2371 42.89329 3
Osa07LNT0374900.1 7 Osa07LNG0374900 11288040-11292046 sense lncRNA 1237 53.59741 2
Osa07LNT0375000.1 7 Osa07LNG0375000 11380999-11388213 long non-coding(lnc) isoforms of known genes 1630 56.38037 3
Osa07LNT0375100.2 7 Osa07LNG0375100 11514045-11518129 long non-coding(lnc) isoforms of known genes 2666 43.28582 6
Osa07LNT0375100.1 7 Osa07LNG0375100 11514045-11518129 long non-coding(lnc) isoforms of known genes 3569 41.63631 5
Osa07LNT0363200.1 7 Osa07LNG0363200 115444-118119 long non-coding(lnc) isoforms of known genes 1363 51.28393 6
Osa07LNT0375200.1 7 Osa07LNG0375200 11551204-11570246 long non-coding(lnc) isoforms of known genes 2815 46.0746 21
Osa07LNT0375300.1 7 Osa07LNG0375300 11592363-11596835 long non-coding(lnc) isoforms of known genes 1485 49.22559 8
Osa07LNT0375400.1 7 Osa07LNG0375400 11632185-11636632 long non-coding(lnc) isoforms of known genes 1674 54.48029 13
Osa07LNT0375600.1 7 Osa07LNG0375600 11644319-11646175 sense lncRNA 1045 52.82297 3
Osa07LNT0375500.1 7 Osa07LNG0375500 11721586-11722157 intergenetic lncRNA (lincRNA) 572 67.48252 1
Osa07LNT0375700.1 7 Osa07LNG0375700 11887215-11894395 long non-coding(lnc) isoforms of known genes 2803 45.59401 12
Osa07LNT0375700.4 7 Osa07LNG0375700 11887215-11894395 long non-coding(lnc) isoforms of known genes 2096 48.33015 13
Osa07LNT0375700.3 7 Osa07LNG0375700 11887215-11894395 long non-coding(lnc) isoforms of known genes 3129 42.47363 12
Osa07LNT0375700.2 7 Osa07LNG0375700 11887215-11894395 long non-coding(lnc) isoforms of known genes 3662 41.94429 12
Osa07LNT0364000.1 7 Osa07LNG0364000 1199188-1201426 long non-coding(lnc) isoforms of known genes 1277 51.91856 2
Osa07LNT0364100.1 7 Osa07LNG0364100 1202315-1207049 sense lncRNA 2433 53.84299 12
Osa07LNT0364200.1 7 Osa07LNG0364200 1215390-1215649 intronic lncRNA 260 32.30769 1
Osa07LNT0375800.1 7 Osa07LNG0375800 12545755-12546892 long non-coding(lnc) isoforms of known genes 840 40.35714 3
Osa07LNT0375900.2 7 Osa07LNG0375900 12652992-12656414 long non-coding(lnc) isoforms of known genes 1008 47.81746 5
Osa07LNT0375900.1 7 Osa07LNG0375900 12652992-12656414 long non-coding(lnc) isoforms of known genes 1011 47.77448 5
Osa07LNT0375900.3 7 Osa07LNG0375900 12652992-12656414 long non-coding(lnc) isoforms of known genes 1484 43.0593 5
Osa07LNT0526900.1 7 Osa07LNG0526900 12738752-12739007 intergenetic lncRNA (lincRNA) 256 26.17188 1
Osa07LNT0376000.1 7 Osa07LNG0376000 12783994-12790289 long non-coding(lnc) isoforms of known genes 1840 43.53261 16
Osa07LNT0376100.1 7 Osa07LNG0376100 12795131-12803556 long non-coding(lnc) isoforms of known genes 2238 44.86148 11
Osa07LNT0376200.1 7 Osa07LNG0376200 12916973-12924202 long non-coding(lnc) isoforms of known genes 2465 45.07099 13
Osa07LNT0376300.1 7 Osa07LNG0376300 13064436-13068270 long non-coding(lnc) isoforms of known genes 1489 47.07858 5
Osa07LNT0376400.1 7 Osa07LNG0376400 13074446-13078520 long non-coding(lnc) isoforms of known genes 1348 50.07418 10
Osa07LNT0376500.1 7 Osa07LNG0376500 13149642-13153367 sense lncRNA 2030 44.48276 9
Osa07LNT0376600.1 7 Osa07LNG0376600 13275950-13283719 long non-coding(lnc) isoforms of known genes 4785 47.628 7
Osa07LNT0376700.2 7 Osa07LNG0376700 13309324-13311967 intergenetic lncRNA (lincRNA) 2418 37.13813 3
Osa07LNT0376700.1 7 Osa07LNG0376700 13309324-13311967 intergenetic lncRNA (lincRNA) 985 42.53807 4
Osa07LNT0527000.1 7 Osa07LNG0527000 13364859-13365081 intergenetic lncRNA (lincRNA) 223 24.21525 1
Osa07LNT0376800.1 7 Osa07LNG0376800 13436764-13440194 long non-coding(lnc) isoforms of known genes 2338 41.23182 2
Osa07LNT0376800.2 7 Osa07LNG0376800 13436764-13440194 sense lncRNA 3094 40.69166 2
Osa07LNT0527100.1 7 Osa07LNG0527100 13502651-13503006 intergenetic lncRNA (lincRNA) 356 54.21348 1
Osa07LNT0527200.1 7 Osa07LNG0527200 13502779-13503043 intergenetic lncRNA (lincRNA) 265 53.58491 1
Osa07LNT0376900.1 7 Osa07LNG0376900 13523436-13530672 long non-coding(lnc) isoforms of known genes 2954 45.26066 13
Osa07LNT0376900.2 7 Osa07LNG0376900 13523436-13530672 long non-coding(lnc) isoforms of known genes 2448 48.08007 12
Osa07LNT0376900.4 7 Osa07LNG0376900 13523436-13530672 long non-coding(lnc) isoforms of known genes 2560 47.57812 12
Osa07LNT0376900.3 7 Osa07LNG0376900 13523436-13530672 long non-coding(lnc) isoforms of known genes 2358 48.72774 14
Osa07LNT0377000.1 7 Osa07LNG0377000 13776950-13779920 sense lncRNA 1450 46.55172 2
Osa07LNT0377100.2 7 Osa07LNG0377100 14485257-14489280 sense lncRNA 3391 39.95871 2
Osa07LNT0377100.1 7 Osa07LNG0377100 14485257-14489280 sense lncRNA 2944 40.35326 2
Osa07LNT0377200.2 7 Osa07LNG0377200 14506007-14512581 long non-coding(lnc) isoforms of known genes 3583 42.11555 7
Osa07LNT0377200.1 7 Osa07LNG0377200 14506007-14512581 long non-coding(lnc) isoforms of known genes 3309 44.09187 7
Osa07LNT0377300.1 7 Osa07LNG0377300 14610582-14611081 intronic lncRNA 500 37.2 1
Osa07LNT0377400.1 7 Osa07LNG0377400 14715004-14716454 long non-coding(lnc) isoforms of known genes 1366 42.89898 2
Osa07LNT0377500.1 7 Osa07LNG0377500 14774634-14779028 long non-coding(lnc) isoforms of known genes 1166 43.31046 5
Osa07LNT0521700.1 7 Osa07LNG0521700 1480929-1481203 intergenetic lncRNA (lincRNA) 275 26.18182 1
Osa07LNT0527400.1 7 Osa07LNG0527400 14819176-14819465 intergenetic lncRNA (lincRNA) 290 26.2069 1
Osa07LNT0527300.1 7 Osa07LNG0527300 14819176-14819465 intergenetic lncRNA (lincRNA) 290 26.2069 1
Osa07LNT0377600.1 7 Osa07LNG0377600 14899931-14900470 intergenetic lncRNA (lincRNA) 540 53.33333 1
Osa07LNT0527500.1 7 Osa07LNG0527500 14984696-14984940 intergenetic lncRNA (lincRNA) 245 24.4898 1
Osa07LNT0377700.1 7 Osa07LNG0377700 14993583-14996370 intergenetic lncRNA (lincRNA) 988 44.93927 5
Osa07LNT0364300.1 7 Osa07LNG0364300 1503402-1505523 intergenetic lncRNA (lincRNA) 541 60.62847 3
Osa07LNT0521800.1 7 Osa07LNG0521800 1506858-1507132 intergenetic lncRNA (lincRNA) 275 25.81818 1